Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007716

Physical Location & Seq

Genomic Coordinates Forward (+)

1769006 .. 1771937

Gene Structure 2932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAAGTGTTTAGTAATGGAGAGGCATAAGGCTTATGTTGCAATGCTCTTCATACAGTTTGTGTATGCAGGTATGGCCTTGTTCTCTAAGGCAGCAATTTCTAAAGGAATGAACCCTTTTGTCTTTGTGGTTTATCGTCAAGGTTTTGCCTCCCTTGCCTTGGCTCCCTTTGCGTTCTTCCTTGAAAGTTCAAAAGAAGCTCCTCTTTCCTACACCTTACTCTGCAAGATTTTCTTAGTCTCCTTATCTGGGATTACCCTGAGTTTAAATCTCTACTATGTTGCAATCAACTACACCTCTGCAACCTTTGCTGCAGCCACCACCACTTTAATTCCTGCGATCACTTTCTTCATGGCGGTTTTATTAAGGATGGAAAGCATTTCTATGAAACATTTGCACGGAGTGGCCAAGGTGTTGGGTTCTCTCACAAGCCTTTCAGGAGCTTTGGTGTTTGCTTTAGTGAAGGGGCCTTCCATAAACTTCAACTGGTTTCCATCAAATCAAAGGCAAATTCCACACTCCTCCTCATCAGCTTCCTCCACAGGAGGAGACTGGTTAAAAGGTTCCCTCATCATGATATCGGCCAATACTGCATGGGCTTTGTGGTTAATTTTGCAGGGTCCCATTATCAAGCAATATCCGGCAAAGTTGAGGCTTACCACTCTGCAATGCTTCTTCAGCTGCATCCTGTCAGCTTTCTGGGCCATTGCATTTGAGAGAAACCCATCAGCTTGGAAGATTGGATGGGACATTCATCTTCTCTCTGTTGTCTATTGTGGTGTAATTGTAACTGGGATTACTTATTGGCTGCAAGTTTGGGTCATAGAGAAGAAGGGCCCAGTATTCACTGCATCGTTCACTCCATTATCACTTATTATAACAGCCGTCTTCTCAGCATTCATGTGGAAAGAAGCCATCTACTTGGGAAGTATCGGAGGGGGTGTATTGCTAGTTGCGGGTCTCTATGGGGTGTTGTGGGTAAAGAAGAAAGAGGACCAAAGGAGCCAAGAAAGTGATCAAAAACAAGAAAACAAGCCGGAAGTCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

350

Amino Acids

38.54

Weight (kDa)

9.52

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	11 - 142	1.2e-14	EamA-like transporter family
EamA	PF00892	187 - 325	1.1e-13	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43650 AT1G43650
fragaria_vesca	FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810 FvH4_2g13810
malus_domestica	MD05G1024800.v1.1 MD10G1025300.v1.1
prunus_persica	Prupe.8G028900_v2.0.a1
pyrus_communis	pycom05g01580 pycom10g01670
rosa_chinensis	RchiOBHm_Chr6g0275461
rosa_laevigata	RLG00000013461
rosa_multiflora	Rmu_sc0007358.1_g000006
rosa_roxburghii	Rroxscaffold_7G00193270
rosa_rugosa	Rorug06G0092600 Rorug06G0092700 Rorug06G0092800
rosa_samantha	Rh6AG205800 Rh6BG208700 Rh6CG211100 Rh6DG201300
rosa_wichuraiana	Rw6G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	878
Acc36I	ACCTGC	1 cut(s)	59
AciI	CCGC	2 cut(s)	356, 956
AcoI	YGGCCR	2 cut(s)	405, 582
AcsI	RAATTY	1 cut(s)	510
AcuI	CTGAAG	1 cut(s)	661
AdeI	CACNNNGTG	1 cut(s)	403
AfiI	CCNNNNNNNGG	2 cut(s)	160, 249
AgsI	TTSAA	3 cut(s)	185, 192, 484
AluBI	AGCT	6 cut(s)	200, 443, 533, 681, 695, 731
AluI	AGCT	6 cut(s)	200, 443, 533, 681, 695, 731
Alw26I	GTCTC	3 cut(s)	244, 543, 965
AoxI	GGCC	6 cut(s)	75, 405, 467, 582, 702, 835
ApaI	GGGCCC	1 cut(s)	839
ApeKI	GCWGC	5 cut(s)	92, 311, 314, 681, 808
ApoI	RAATTY	1 cut(s)	510
AspS9I	GGNCC	6 cut(s)	467, 620, 702, 835, 836, 994
AvaII	GGWCC	2 cut(s)	620, 994
BaeGI	GKGCMC	1 cut(s)	839
BalI	TGGCCA	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	839
BbsI	GAAGAC	1 cut(s)	880
BbvI	GCAGC	5 cut(s)	104, 298, 326, 668, 795
BccI	CCATC	5 cut(s)	364, 502, 733, 738, 923
BceAI	ACGGC	1 cut(s)	869
BclI	TGATCA	1 cut(s)	1015
BcoDI	GTCTC	3 cut(s)	244, 543, 965
BfaI	CTAG	1 cut(s)	950
BfmI	CTRYAG	1 cut(s)	312
BfuAI	ACCTGC	1 cut(s)	59
BisI	GCNGC	5 cut(s)	93, 312, 315, 682, 809
BlsI	GCNGC	5 cut(s)	94, 313, 316, 683, 810
Bme18I	GGWCC	2 cut(s)	620, 994
BmgT120I	GGNCC	6 cut(s)	467, 620, 702, 835, 836, 994
BmiI	GGNNCC	7 cut(s)	165, 468, 565, 621, 622, 837, 1004
BmrI	ACTGGG	2 cut(s)	801, 833
BmsI	GCATC	2 cut(s)	693, 860
BmuI	ACTGGG	2 cut(s)	801, 833
BpiI	GAAGAC	1 cut(s)	880
BsaI	GGTCTC	1 cut(s)	965
BsaJI	CCNNGG	2 cut(s)	159, 408
BsaXI	ACNNNNNCTCC	4 cut(s)	432, 462, 927, 957
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 249
Bse1I	ACTGG	4 cut(s)	491, 557, 796, 839
Bse3DI	GCAATG	3 cut(s)	48, 674, 705
BseDI	CCNNGG	2 cut(s)	159, 408
BseGI	GGATG	3 cut(s)	375, 684, 749
BseLI	CCNNNNNNNGG	2 cut(s)	160, 249
BseMI	GCAATG	3 cut(s)	48, 674, 705
BseMII	CTCAG	2 cut(s)	251, 906
BseNI	ACTGG	4 cut(s)	491, 557, 796, 839
BseRI	GAGGAG	4 cut(s)	192, 511, 514, 561
BseSI	GKGCMC	1 cut(s)	839
BseXI	GCAGC	5 cut(s)	104, 298, 326, 668, 795
BshFI	GGCC	6 cut(s)	77, 407, 469, 584, 704, 837
BsiSI	CCGG	2 cut(s)	641, 1037
BslFI	GGGAC	2 cut(s)	606, 761
BslI	CCNNNNNNNGG	2 cut(s)	160, 249
BsmAI	GTCTC	3 cut(s)	244, 543, 965
BsmFI	GGGAC	2 cut(s)	606, 761
BsmI	GAATGC	1 cut(s)	896
BsnI	GGCC	6 cut(s)	77, 407, 469, 584, 704, 837
Bso31I	GGTCTC	1 cut(s)	965
Bsp120I	GGGCCC	1 cut(s)	835
Bsp1286I	GDGCHC	1 cut(s)	839
Bsp143I	GATC	2 cut(s)	339, 1015
BspACI	CCGC	2 cut(s)	356, 956
BspANI	GGCC	6 cut(s)	77, 407, 469, 584, 704, 837
BspCNI	CTCAG	2 cut(s)	252, 905
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	7 cut(s)	165, 468, 565, 621, 622, 837, 1004
BspMAI	CTGCAG	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	59
BspQI	GCTCTTC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	965
BsrDI	GCAATG	3 cut(s)	48, 674, 705
BsrI	ACTGG	4 cut(s)	491, 557, 796, 839
BssECI	CCNNGG	2 cut(s)	159, 408
BssMI	GATC	2 cut(s)	339, 1015
BssT1I	CCWWGG	2 cut(s)	159, 408
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstDEI	CTNAG	4 cut(s)	87, 235, 260, 892
BstF5I	GGATG	3 cut(s)	375, 684, 749
BstKTI	GATC	2 cut(s)	342, 1018
BstMAI	GTCTC	3 cut(s)	244, 543, 965
BstMBI	GATC	2 cut(s)	339, 1015
BstMWI	GCNNNNNNNGC	8 cut(s)	38, 74, 155, 170, 308, 590, 678, 701
BstSFI	CTRYAG	1 cut(s)	312
BstSLI	GKGCMC	1 cut(s)	839
BstV1I	GCAGC	5 cut(s)	104, 298, 326, 668, 795
BstV2I	GAAGAC	1 cut(s)	880
BstXI	CCANNNNNNTGG	3 cut(s)	415, 732, 922
BsuRI	GGCC	6 cut(s)	77, 407, 469, 584, 704, 837
BtsCI	GGATG	3 cut(s)	375, 684, 749
BtsI	GCAGTG	1 cut(s)	846
BtsIMutI	CAGTG	1 cut(s)	846
BveI	ACCTGC	1 cut(s)	59
CciI	TCATGA	1 cut(s)	573
Cfr13I	GGNCC	6 cut(s)	467, 620, 702, 835, 836, 994
CviAII	CATG	4 cut(s)	352, 574, 594, 901
DdeI	CTNAG	4 cut(s)	87, 235, 260, 892
DpnI	GATC	2 cut(s)	341, 1017
DpnII	GATC	2 cut(s)	339, 1015
DraI	TTTAAA	1 cut(s)	267
DraIII	CACNNNGTG	1 cut(s)	403
EaeI	YGGCCR	2 cut(s)	405, 582
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	2 cut(s)	159, 408
Eco24I	GRGCYC	1 cut(s)	839
Eco31I	GGTCTC	1 cut(s)	965
Eco32I	GATATC	1 cut(s)	579
Eco47I	GGWCC	2 cut(s)	620, 994
Eco57I	CTGAAG	1 cut(s)	661
EcoO109I	RGGNCCY	3 cut(s)	467, 620, 835
EcoRV	GATATC	1 cut(s)	579
EcoT14I	CCWWGG	2 cut(s)	159, 408
EcoT38I	GRGCYC	1 cut(s)	839
ErhI	CCWWGG	2 cut(s)	159, 408
FaeI	CATG	4 cut(s)	355, 577, 597, 904
FalI	AAGNNNNNCTT	4 cut(s)	189, 221, 218, 250
FaqI	GGGAC	2 cut(s)	606, 761
FatI	CATG	4 cut(s)	351, 573, 593, 900
FauI	CCCGC	1 cut(s)	949
FbaI	TGATCA	1 cut(s)	1015
Fnu4HI	GCNGC	5 cut(s)	93, 312, 315, 682, 809
FokI	GGATG	3 cut(s)	382, 671, 756
FriOI	GRGCYC	1 cut(s)	839
Fsp4HI	GCNGC	5 cut(s)	93, 312, 315, 682, 809
FspBI	CTAG	1 cut(s)	950
GluI	GCNGC	5 cut(s)	93, 312, 315, 682, 809
HaeIII	GGCC	6 cut(s)	77, 407, 469, 584, 704, 837
HapII	CCGG	2 cut(s)	641, 1037
Hin1II	CATG	4 cut(s)	355, 577, 597, 904
HpaII	CCGG	2 cut(s)	641, 1037
Hpy166II	GTNNAC	1 cut(s)	858
Hpy188I	TCNGA	1 cut(s)	935
Hpy188III	TCNNGA	2 cut(s)	438, 574
Hpy8I	GTNNAC	1 cut(s)	858
HpyAV	CCTTC	3 cut(s)	457, 480, 826
HpyCH4III	ACNGT	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	8 cut(s)	38, 74, 155, 170, 308, 590, 678, 701
HpyF3I	CTNAG	4 cut(s)	87, 235, 260, 892
Hsp92II	CATG	4 cut(s)	355, 577, 597, 904
KflI	GGGWCCC	1 cut(s)	620
Ksp22I	TGATCA	1 cut(s)	1015
Kzo9I	GATC	2 cut(s)	339, 1015
LguI	GCTCTTC	1 cut(s)	53
LmnI	GCTCC	4 cut(s)	169, 205, 440, 1002
Lsp1109I	GCAGC	5 cut(s)	104, 298, 326, 668, 795
LweI	GCATC	2 cut(s)	693, 860
MaeI	CTAG	1 cut(s)	950
MaeIII	GTNAC	1 cut(s)	787
MalI	GATC	2 cut(s)	341, 1017
MboI	GATC	2 cut(s)	339, 1015
MboII	GAAGA	9 cut(s)	40, 169, 340, 667, 748, 749, 841, 880, 997
MhlI	GDGCHC	1 cut(s)	839
MlsI	TGGCCA	1 cut(s)	407
MluCI	AATT	5 cut(s)	96, 330, 510, 609, 783
MluNI	TGGCCA	1 cut(s)	407
Mox20I	TGGCCA	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	407
MseI	TTAA	5 cut(s)	266, 329, 365, 557, 608
MslI	CAYNNNNRTG	2 cut(s)	383, 901
Msp20I	TGGCCA	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	681
MspI	CCGG	2 cut(s)	641, 1037
Mva1269I	GAATGC	1 cut(s)	896
MwoI	GCNNNNNNNGC	8 cut(s)	38, 74, 155, 170, 308, 590, 678, 701
NdeII	GATC	2 cut(s)	339, 1015
NlaIII	CATG	4 cut(s)	355, 577, 597, 904
NlaIV	GGNNCC	7 cut(s)	165, 468, 565, 621, 622, 837, 1004
PagI	TCATGA	1 cut(s)	573
PciSI	GCTCTTC	1 cut(s)	53
PctI	GAATGC	1 cut(s)	896
PkrI	GCNGC	5 cut(s)	94, 313, 316, 683, 810
PpuMI	RGGWCCY	1 cut(s)	620
PsiI	TTATAA	1 cut(s)	878
Psp5II	RGGWCCY	1 cut(s)	620
PspN4I	GGNNCC	7 cut(s)	165, 468, 565, 621, 622, 837, 1004
PspOMI	GGGCCC	1 cut(s)	835
PspPI	GGNCC	6 cut(s)	467, 620, 702, 835, 836, 994
PspPPI	RGGWCCY	1 cut(s)	620
PstI	CTGCAG	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	681
RseI	CAYNNNNRTG	2 cut(s)	383, 901
SapI	GCTCTTC	1 cut(s)	53
SaqAI	TTAA	5 cut(s)	266, 329, 365, 557, 608
SatI	GCNGC	5 cut(s)	93, 312, 315, 682, 809
Sau3AI	GATC	2 cut(s)	339, 1015
Sau96I	GGNCC	6 cut(s)	467, 620, 702, 835, 836, 994
SduI	GDGCHC	1 cut(s)	839
SfaNI	GCATC	2 cut(s)	693, 860
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	2 cut(s)	620, 994
SmiMI	CAYNNNNRTG	2 cut(s)	383, 901
Sse9I	AATT	5 cut(s)	96, 330, 510, 609, 783
SsiI	CCGC	2 cut(s)	356, 956
SspMI	CTAG	1 cut(s)	950
StyI	CCWWGG	2 cut(s)	159, 408
TaaI	ACNGT	1 cut(s)	57
TasI	AATT	5 cut(s)	96, 330, 510, 609, 783
Tru1I	TTAA	5 cut(s)	266, 329, 365, 557, 608
Tru9I	TTAA	5 cut(s)	266, 329, 365, 557, 608
TscAI	CASTG	1 cut(s)	853
TseI	GCWGC	5 cut(s)	92, 311, 314, 681, 808
TspDTI	ATGAA	7 cut(s)	17, 40, 125, 340, 401, 743, 889
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	1 cut(s)	853
VpaK11BI	GGWCC	2 cut(s)	620, 994
XapI	RAATTY	1 cut(s)	510
XspI	CTAG	1 cut(s)	950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.