Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010509

Physical Location & Seq

Genomic Coordinates Reverse (-)

1852506 .. 1853960

Gene Structure 1455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAAGTTCTCCATGCTCATCTTGGTGTGCTTGCTCTCTTTACTCTTCCAGCATTCTCACTCCACCACAATACTAGTTGATGGAGTTTCAGAGTGGAAAAACCCAACTGTTCATGTGGGAGACTCCGTCATTTTCAAGCACAAGTATCGGTACAACCTCTACATTTTCCAGAACCAAAGAGCCTTCGATCTCTGCAATTTCATTCAAGCCACTCTTCTCAGCAAACCTGACTCCACCTCCTTCACGTGGTACCCATCACGCACTGGTTTCTTCTACTTTGCCTTCAACAATGGCTCTCTGCTGAAAACATGCCAAAACACTCAAAAGCTGGCCATAACAGTCTCCTCCTCCTCCGCACCGCCGCCGCAGAGTTCCGGTTCAAGTTCAAGAATCTCTCCGCAGCTTCCTCCAACCGTGGCCCCAACACCGAAATCCGGTGGTGGTGGAGTAGTTTCACCATCTCCAGTATTCCCATGGCCATTCCATCCTCGCCAAGTGGCAGTAGCTCCCAGCCCACAACCAAGCGTAAGCTCTTCAGTAACAGATAAAGGAGGCGGCGGCGGCGGCGGAATCCCATTCATTAACAGTAATCCTGCTGTTCCTTTGCCTACTGGTGAAGTGGATTCAACTACAATACGCCCTATACCAACCTCTGGCCACCAGAGACAGGTGCTGGTGGGGTTATTTGCTGCTCAAATGGAATTGGCTCTGTTTTGTGTGGTTTTCCTGGTGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

26.33

Weight (kDa)

9.44

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21090 AT1G21090
fragaria_vesca	FvH4_2g13650 FvH4_2g13650
malus_domestica	MD05G1026900.v1.1 MD10G1026200.v1.1
prunus_persica	Prupe.8G031400_v2.0.a1
pyrus_communis	pycom05g01870 pycom10g01760 pycom10g01770
rosa_chinensis	RchiOBHm_Chr6g0275291
rosa_laevigata	RLG00000013475
rosa_multiflora	Rmu_co8482861.1_g000001 Rmu_sc0005558.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193430
rosa_rugosa	Rorug06G0090900
rosa_samantha	Rh6AG204500 Rh6BG207300 Rh6CG209900 Rh6DG200300
rosa_wichuraiana	Rw6G017750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	249
AccB7I	CCANNNNNTGG	1 cut(s)	653
AcoI	YGGCCR	3 cut(s)	330, 476, 655
AcuI	CTGAAG	1 cut(s)	519
AcvI	CACGTG	1 cut(s)	246
AfaI	GTAC	2 cut(s)	152, 251
AfiI	CCNNNNNNNGG	4 cut(s)	246, 434, 653, 667
AgsI	TTSAA	6 cut(s)	136, 206, 286, 381, 387, 627
AhlI	ACTAGT	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	726
AluBI	AGCT	4 cut(s)	328, 403, 506, 531
AluI	AGCT	4 cut(s)	328, 403, 506, 531
Alw26I	GTCTC	3 cut(s)	114, 346, 658
AlwNI	CAGNNNCTG	1 cut(s)	673
AoxI	GGCC	4 cut(s)	330, 417, 476, 655
ApeKI	GCWGC	2 cut(s)	400, 689
Asp718I	GGTACC	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	418
AsuHPI	GGTGA	2 cut(s)	447, 626
BalI	TGGCCA	3 cut(s)	332, 478, 657
BanI	GGYRCC	1 cut(s)	249
BbrPI	CACGTG	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	412, 676
BccI	CCATC	4 cut(s)	74, 262, 466, 492
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	1 cut(s)	728
BcoDI	GTCTC	3 cut(s)	114, 346, 658
BcuI	ACTAGT	1 cut(s)	73
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	734
BisI	GCNGC	8 cut(s)	362, 365, 401, 556, 559, 562, 565, 690
BlsI	GCNGC	8 cut(s)	363, 366, 402, 557, 560, 563, 566, 691
Bme1390I	CCNGG	1 cut(s)	728
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	2 cut(s)	251, 420
BmrFI	CCNGG	1 cut(s)	728
BpmI	CTGGAG	1 cut(s)	447
BsaAI	YACGTR	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	414, 473
BsaWI	WCCGGW	2 cut(s)	374, 434
BsaXI	ACNNNNNCTCC	4 cut(s)	111, 141, 221, 251
Bsc4I	CCNNNNNNNGG	4 cut(s)	246, 434, 653, 667
Bse1I	ACTGG	3 cut(s)	268, 464, 616
BseBI	CCWGG	1 cut(s)	728
BseDI	CCNNGG	2 cut(s)	414, 473
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	4 cut(s)	246, 434, 653, 667
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	3 cut(s)	268, 464, 616
BseRI	GAGGAG	3 cut(s)	334, 337, 340
BseXI	GCAGC	2 cut(s)	412, 676
BseYI	CCCAGC	1 cut(s)	509
BshFI	GGCC	4 cut(s)	332, 419, 478, 657
BshNI	GGYRCC	1 cut(s)	249
BsiSI	CCGG	2 cut(s)	375, 435
BslI	CCNNNNNNNGG	4 cut(s)	246, 434, 653, 667
BsmAI	GTCTC	3 cut(s)	114, 346, 658
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	4 cut(s)	332, 419, 478, 657
Bsp143I	GATC	1 cut(s)	187
Bsp19I	CCATGG	1 cut(s)	473
BspANI	GGCC	4 cut(s)	332, 419, 478, 657
BspCNI	CTCAG	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	251, 420
BspQI	GCTCTTC	1 cut(s)	538
BspT107I	GGYRCC	1 cut(s)	249
BsrI	ACTGG	3 cut(s)	268, 464, 616
BssECI	CCNNGG	2 cut(s)	414, 473
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	473
Bst2UI	CCWGG	1 cut(s)	728
Bst4CI	ACNGT	4 cut(s)	109, 340, 415, 587
Bst6I	CTCTTC	3 cut(s)	50, 219, 538
BstBAI	YACGTR	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	32, 330
BstDEI	CTNAG	1 cut(s)	218
BstDSI	CCRYGG	2 cut(s)	414, 473
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	3 cut(s)	114, 346, 658
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	561, 564
BstNI	CCWGG	1 cut(s)	728
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	726
BstSFI	CTRYAG	1 cut(s)	734
BstV1I	GCAGC	2 cut(s)	412, 676
BsuRI	GGCC	4 cut(s)	332, 419, 478, 657
BtgI	CCRYGG	2 cut(s)	414, 473
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	2 cut(s)	32, 330
CaiI	CAGNNNCTG	1 cut(s)	673
Cfr13I	GGNCC	1 cut(s)	418
Csp6I	GTAC	2 cut(s)	151, 250
CviAII	CATG	4 cut(s)	13, 113, 309, 474
CviQI	GTAC	2 cut(s)	151, 250
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
EaeI	YGGCCR	3 cut(s)	330, 476, 655
Eam1104I	CTCTTC	3 cut(s)	50, 219, 538
EarI	CTCTTC	3 cut(s)	50, 219, 538
EciI	GGCGGA	1 cut(s)	582
Eco130I	CCWWGG	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	519
Eco72I	CACGTG	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	726
EcoT14I	CCWWGG	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	4 cut(s)	16, 116, 312, 477
FaiI	YATR	6 cut(s)	14, 114, 310, 335, 475, 644
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FatI	CATG	4 cut(s)	12, 112, 308, 473
Fnu4HI	GCNGC	8 cut(s)	362, 365, 401, 556, 559, 562, 565, 690
FokI	GGATG	1 cut(s)	471
Fsp4HI	GCNGC	8 cut(s)	362, 365, 401, 556, 559, 562, 565, 690
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	8 cut(s)	362, 365, 401, 556, 559, 562, 565, 690
GsaI	CCCAGC	1 cut(s)	513
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	4 cut(s)	332, 419, 478, 657
HapII	CCGG	2 cut(s)	375, 435
Hin1II	CATG	4 cut(s)	16, 116, 312, 477
HinfI	GANTC	5 cut(s)	122, 230, 390, 570, 623
HpaII	CCGG	2 cut(s)	375, 435
HphI	GGTGA	2 cut(s)	447, 626
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	169, 387
HpyAV	CCTTC	3 cut(s)	193, 250, 292
HpyCH4III	ACNGT	4 cut(s)	109, 340, 415, 587
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	561, 564
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	4 cut(s)	16, 116, 312, 477
KpnI	GGTACC	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	187
LguI	GCTCTTC	1 cut(s)	538
LmnI	GCTCC	1 cut(s)	511
Lsp1109I	GCAGC	2 cut(s)	412, 676
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	4 cut(s)	37, 206, 262, 525
MlsI	TGGCCA	3 cut(s)	332, 478, 657
MluCI	AATT	2 cut(s)	196, 701
MluNI	TGGCCA	3 cut(s)	332, 478, 657
MlyI	GAGTC	2 cut(s)	116, 224
MmeI	TCCRAC	1 cut(s)	434
MnlI	CCTC	9 cut(s)	167, 247, 355, 358, 361, 417, 498, 545, 661
Mox20I	TGGCCA	3 cut(s)	332, 478, 657
MscI	TGGCCA	3 cut(s)	332, 478, 657
MseI	TTAA	1 cut(s)	582
MslI	CAYNNNNRTG	1 cut(s)	23
Msp20I	TGGCCA	3 cut(s)	332, 478, 657
MspI	CCGG	2 cut(s)	375, 435
MspR9I	CCNGG	1 cut(s)	728
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	728
MwoI	GCNNNNNNNGC	2 cut(s)	561, 564
NcoI	CCATGG	1 cut(s)	473
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	4 cut(s)	16, 116, 312, 477
NlaIV	GGNNCC	2 cut(s)	251, 420
NspI	RCATGY	1 cut(s)	312
PciSI	GCTCTTC	1 cut(s)	538
PctI	GAATGC	1 cut(s)	52
PfeI	GAWTC	3 cut(s)	390, 570, 623
PflFI	GACNNNGTC	1 cut(s)	125
PflMI	CCANNNNNTGG	1 cut(s)	653
PkrI	GCNGC	8 cut(s)	363, 366, 402, 557, 560, 563, 566, 691
PleI	GAGTC	2 cut(s)	116, 224
PmaCI	CACGTG	1 cut(s)	246
PmlI	CACGTG	1 cut(s)	246
PpsI	GAGTC	2 cut(s)	116, 224
Ppu21I	YACGTR	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	726
PspCI	CACGTG	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	726
PspN4I	GGNNCC	2 cut(s)	251, 420
PspPI	GGNCC	1 cut(s)	418
PstNI	CAGNNNCTG	1 cut(s)	673
PsyI	GACNNNGTC	1 cut(s)	125
RsaI	GTAC	2 cut(s)	152, 251
RsaNI	GTAC	2 cut(s)	151, 250
RseI	CAYNNNNRTG	1 cut(s)	23
SapI	GCTCTTC	1 cut(s)	538
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	8 cut(s)	362, 365, 401, 556, 559, 562, 565, 690
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	418
SchI	GAGTC	2 cut(s)	116, 224
ScrFI	CCNGG	1 cut(s)	728
SfcI	CTRYAG	1 cut(s)	734
SmiMI	CAYNNNNRTG	1 cut(s)	23
SpeI	ACTAGT	1 cut(s)	73
Sse9I	AATT	2 cut(s)	196, 701
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	726
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	4 cut(s)	109, 340, 415, 587
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	196, 701
TauI	GCSGC	6 cut(s)	364, 367, 558, 561, 564, 567
TfiI	GAWTC	3 cut(s)	390, 570, 623
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	1 cut(s)	268
TseI	GCWGC	2 cut(s)	400, 689
TspDTI	ATGAA	4 cut(s)	17, 101, 190, 568
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	1 cut(s)	268
Tth111I	GACNNNGTC	1 cut(s)	125
Van91I	CCANNNNNTGG	1 cut(s)	653
XceI	RCATGY	1 cut(s)	312
XcmI	CCANNNNNNNNNTGG	2 cut(s)	19, 471
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.