pycom10g02580

Belongs to the purine pyrimidine phosphoribosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013301
Physical Location & Seq
Reverse (-)
2938200 .. 2939724
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 561 bp
ATGTCCTTGGACTCTCACATAGAGAGGGTCCTCTGGACTCCCGACCAAATCGCCGCCCGTGTTTCCGACCTCGCCGCCCAAATCTCCGCCGACTTCTCCCTCTCCCAACCCCCTGCCCTCGTAGGCGTCGCCACAGGCGCCTTTCTCTTCCTCGCCGACTTGGCCCGCCAAATCCCCCTCCCCGTCACCGTCGACTTCATCCGCGCCGAATCCTACGGCTCCGGGACCCTGTCCAATGGCGCCCCCACGATTTCCTTGGACTTGAAGGTCGACGTCACCGGCCGCCACGTCGTCCTGGTTGAGGACATTGTGGATACAGGAAGCACAATTGAGCGTCTGATTGCACACATGGAATCGAAAGGAGCTTCGTCTGTCTCGGTCTGCACGTTTCTGGATAAACCATCGAGACGGAAGGTTCATTTTCAGCTTCTCAGCAACGGGAAATTCTACCGCGGTTTCGAGTGTCCAGATTACTTTGTTGTGGGCTACGGAATGGACTTTGATGAACGTTACAGGAACTTGCCGTACATTGGTGTATTGAAGCCCGAGCTGTATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110
Pfam Domains
Protein Families
Pribosyltran

Protein Analysis

187

Amino Acids

20.49

Weight (kDa)

5.53

Isoelectric Point (pI)

27.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran PF00156 16 - 167 2.7e-29 Phosphoribosyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71750 AT1G71750
fragaria_vesca FvH4_2g12860 FvH4_2g12860
malus_domestica MD05G1035600.v1.1 MD10G1037900.v1.1
prunus_persica Prupe.8G043500_v2.0.a1
pyrus_communis pycom05g02620 pycom10g02580
rosa_chinensis RchiOBHm_Chr6g0273931
rosa_laevigata RLG00000013590
rosa_multiflora Rmu_sc0000045.1_g000078 Rmu_sc0013374.1_g000005
rosa_roxburghii Rroxscaffold_7G00194860
rosa_rugosa Rorug06G0077700
rosa_samantha Rh6AG193300 Rh6DG188400
rosa_wichuraiana Rw6G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AatII GACGTC 1 cut(s) 276
AccB1I GGYRCC 2 cut(s) 137, 239
AccI GTMKAC 2 cut(s) 192, 270
AccII CGCG 2 cut(s) 204, 453
AciI CCGC 8 cut(s) 54, 75, 87, 166, 202, 283, 451, 453
AclI AACGTT 1 cut(s) 508
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 1 cut(s) 443
AcyI GRCGYC 4 cut(s) 126, 138, 240, 273
AfaI GTAC 1 cut(s) 527
AfiI CCNNNNNNNGG 2 cut(s) 301, 530
AgsI TTSAA 2 cut(s) 265, 541
AjiI CACGTC 1 cut(s) 289
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 3 cut(s) 365, 427, 550
AluI AGCT 3 cut(s) 365, 427, 550
Alw26I GTCTC 2 cut(s) 379, 400
Ama87I CYCGRG 1 cut(s) 545
AoxI GGCC 2 cut(s) 162, 280
ApoI RAATTY 1 cut(s) 443
AspLEI GCGC 3 cut(s) 140, 206, 242
AspS9I GGNCC 3 cut(s) 28, 163, 225
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 2 cut(s) 178, 268
AvaI CYCGRG 1 cut(s) 545
AvaII GGWCC 2 cut(s) 28, 225
BanI GGYRCC 2 cut(s) 137, 239
BccI CCATC 1 cut(s) 409
BceAI ACGGC 2 cut(s) 232, 508
BciT130I CCWGG 1 cut(s) 296
BciVI GTATCC 1 cut(s) 307
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 2 cut(s) 379, 400
BfoI RGCGCY 2 cut(s) 141, 243
BfuI GTATCC 1 cut(s) 307
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 3 cut(s) 54, 75, 283
BlsI GCNGC 3 cut(s) 55, 76, 284
Bme1390I CCNGG 2 cut(s) 223, 296
Bme18I GGWCC 2 cut(s) 28, 225
BmeT110I CYCGRG 1 cut(s) 545
BmgBI CACGTC 1 cut(s) 289
BmgT120I GGNCC 3 cut(s) 28, 163, 225
BmiI GGNNCC 6 cut(s) 29, 139, 220, 226, 227, 241
BmrFI CCNGG 2 cut(s) 223, 296
BpuMI CCSGG 1 cut(s) 223
BsaHI GRCGYC 4 cut(s) 126, 138, 240, 273
BsaJI CCNNGG 3 cut(s) 6, 255, 451
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 530
Bse118I RCCGGY 1 cut(s) 278
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 3 cut(s) 6, 255, 451
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 301, 530
BseMII CTCAG 1 cut(s) 445
BseX3I CGGCCG 1 cut(s) 280
BsgI GTGCAG 1 cut(s) 367
Bsh1236I CGCG 2 cut(s) 204, 453
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 2 cut(s) 164, 282
BshNI GGYRCC 2 cut(s) 137, 239
BsiEI CGRYCG 1 cut(s) 283
BsiHKCI CYCGRG 1 cut(s) 545
BsiSI CCGG 2 cut(s) 222, 279
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 2 cut(s) 301, 530
BsmAI GTCTC 2 cut(s) 379, 400
BsmBI CGTCTC 1 cut(s) 400
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 2 cut(s) 164, 282
BsoBI CYCGRG 1 cut(s) 545
BspACI CCGC 8 cut(s) 54, 75, 87, 166, 202, 283, 451, 453
BspANI GGCC 2 cut(s) 164, 282
BspCNI CTCAG 1 cut(s) 444
BspFNI CGCG 2 cut(s) 204, 453
BspLI GGNNCC 6 cut(s) 29, 139, 220, 226, 227, 241
BspT107I GGYRCC 2 cut(s) 137, 239
BsrFI RCCGGY 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 3 cut(s) 6, 255, 451
BssNI GRCGYC 4 cut(s) 126, 138, 240, 273
BssT1I CCWWGG 2 cut(s) 6, 255
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 152
BstACI GRCGYC 4 cut(s) 126, 138, 240, 273
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 431
BstDSI CCRYGG 1 cut(s) 451
BstENI CCTNNNNNAGG 1 cut(s) 299
BstF5I GGATG 1 cut(s) 198
BstFNI CGCG 2 cut(s) 204, 453
BstH2I RGCGCY 2 cut(s) 141, 243
BstHHI GCGC 3 cut(s) 140, 206, 242
BstMAI GTCTC 2 cut(s) 379, 400
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 2 cut(s) 137, 161
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 2 cut(s) 221, 294
BstUI CGCG 2 cut(s) 204, 453
BstZI CGGCCG 1 cut(s) 280
BsuI GTATCC 1 cut(s) 307
BsuRI GGCC 2 cut(s) 164, 282
BtgI CCRYGG 1 cut(s) 451
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 166
CfoI GCGC 3 cut(s) 140, 206, 242
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 3 cut(s) 28, 163, 225
Cfr42I CCGCGG 1 cut(s) 454
CseI GACGC 2 cut(s) 115, 323
Csp6I GTAC 1 cut(s) 526
CviAII CATG 1 cut(s) 349
CviJI RGCY 8 cut(s) 164, 219, 282, 365, 427, 486, 544, 550
CviKI_1 RGCY 8 cut(s) 164, 219, 282, 365, 427, 486, 544, 550
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 1 cut(s) 431
DinI GGCGCC 2 cut(s) 139, 241
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 1 cut(s) 280
EagI CGGCCG 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
EciI GGCGGA 1 cut(s) 76
EclXI CGGCCG 1 cut(s) 280
Eco130I CCWWGG 2 cut(s) 6, 255
Eco47I GGWCC 2 cut(s) 28, 225
Eco52I CGGCCG 1 cut(s) 280
Eco88I CYCGRG 1 cut(s) 545
EcoNI CCTNNNNNAGG 1 cut(s) 299
EcoO109I RGGNCCY 2 cut(s) 28, 225
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 2 cut(s) 6, 255
EgeI GGCGCC 2 cut(s) 139, 241
EheI GGCGCC 2 cut(s) 139, 241
ErhI CCWWGG 2 cut(s) 6, 255
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 1 cut(s) 352
FaiI YATR 3 cut(s) 20, 350, 555
FaqI GGGAC 1 cut(s) 238
FatI CATG 1 cut(s) 348
FauI CCCGC 1 cut(s) 173
FblI GTMKAC 2 cut(s) 192, 270
Fnu4HI GCNGC 3 cut(s) 54, 75, 283
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 3 cut(s) 54, 75, 283
GlaI GCGC 3 cut(s) 139, 205, 241
GluI GCNGC 3 cut(s) 54, 75, 283
HaeII RGCGCY 2 cut(s) 141, 243
HaeIII GGCC 2 cut(s) 164, 282
HapII CCGG 2 cut(s) 222, 279
HgaI GACGC 2 cut(s) 115, 323
HhaI GCGC 3 cut(s) 140, 206, 242
Hin1I GRCGYC 4 cut(s) 126, 138, 240, 273
Hin1II CATG 1 cut(s) 352
Hin6I GCGC 3 cut(s) 138, 204, 240
HinP1I GCGC 3 cut(s) 138, 204, 240
HincII GTYRAC 2 cut(s) 193, 271
HindII GTYRAC 2 cut(s) 193, 271
HinfI GANTC 4 cut(s) 11, 37, 209, 353
HpaII CCGG 2 cut(s) 222, 279
HphI GGTGA 2 cut(s) 178, 268
Hpy166II GTNNAC 2 cut(s) 193, 271
Hpy188I TCNGA 2 cut(s) 67, 339
Hpy188III TCNNGA 5 cut(s) 34, 41, 392, 405, 467
Hpy8I GTNNAC 2 cut(s) 193, 271
Hpy99I CGWCG 4 cut(s) 131, 194, 275, 293
HpyAV CCTTC 2 cut(s) 259, 406
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 4 cut(s) 273, 288, 386, 508
HpyCH4V TGCA 2 cut(s) 344, 384
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 161
HpyF3I CTNAG 1 cut(s) 431
HpySE526I ACGT 4 cut(s) 273, 288, 386, 508
Hsp92I GRCGYC 4 cut(s) 126, 138, 240, 273
Hsp92II CATG 1 cut(s) 352
HspAI GCGC 3 cut(s) 138, 204, 240
KasI GGCGCC 2 cut(s) 137, 239
KflI GGGWCCC 1 cut(s) 225
KspI CCGCGG 1 cut(s) 454
LmnI GCTCC 2 cut(s) 224, 362
MaeII ACGT 4 cut(s) 273, 288, 386, 508
MaeIII GTNAC 3 cut(s) 184, 274, 509
MboII GAAGA 1 cut(s) 139
MfeI CAATTG 1 cut(s) 327
MluCI AATT 2 cut(s) 327, 443
Mly113I GGCGCC 2 cut(s) 138, 240
MlyI GAGTC 2 cut(s) 5, 31
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 8 cut(s) 18, 41, 80, 110, 128, 161, 188, 295
MspA1I CMGCKG 1 cut(s) 453
MspI CCGG 2 cut(s) 222, 279
MspR9I CCNGG 2 cut(s) 223, 296
MunI CAATTG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 296
MvnI CGCG 2 cut(s) 204, 453
MwoI GCNNNNNNNGC 2 cut(s) 137, 161
NarI GGCGCC 2 cut(s) 138, 240
NciI CCSGG 1 cut(s) 223
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 6 cut(s) 29, 139, 220, 226, 227, 241
NmuCI GTSAC 2 cut(s) 184, 274
PcsI WCGNNNNNNNCGW 1 cut(s) 383
PfeI GAWTC 2 cut(s) 209, 353
PflFI GACNNNGTC 1 cut(s) 229
PfoI TCCNGGA 1 cut(s) 221
PkrI GCNGC 3 cut(s) 55, 76, 284
PleI GAGTC 2 cut(s) 5, 31
PluTI GGCGCC 2 cut(s) 141, 243
PpsI GAGTC 2 cut(s) 5, 31
PpuMI RGGWCCY 2 cut(s) 28, 225
Psp1406I AACGTT 1 cut(s) 508
Psp5II RGGWCCY 2 cut(s) 28, 225
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 6 cut(s) 29, 139, 220, 226, 227, 241
PspPI GGNCC 3 cut(s) 28, 163, 225
PspPPI RGGWCCY 2 cut(s) 28, 225
PsrI GAACNNNNNNTAC 2 cut(s) 509, 541
PsyI GACNNNGTC 1 cut(s) 229
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
SacII CCGCGG 1 cut(s) 454
SalI GTCGAC 2 cut(s) 191, 269
SatI GCNGC 3 cut(s) 54, 75, 283
Sau96I GGNCC 3 cut(s) 28, 163, 225
SchI GAGTC 2 cut(s) 5, 31
ScrFI CCNGG 2 cut(s) 223, 296
SfoI GGCGCC 2 cut(s) 139, 241
Sfr303I CCGCGG 1 cut(s) 454
SgrBI CCGCGG 1 cut(s) 454
SinI GGWCC 2 cut(s) 28, 225
Sse9I AATT 2 cut(s) 327, 443
SsiI CCGC 8 cut(s) 54, 75, 87, 166, 202, 283, 451, 453
SspDI GGCGCC 2 cut(s) 137, 239
StyD4I CCNGG 2 cut(s) 221, 294
StyI CCWWGG 2 cut(s) 6, 255
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 4 cut(s) 276, 291, 389, 511
TaqI TCGA 5 cut(s) 192, 270, 356, 404, 459
TaqII GACCGA 1 cut(s) 367
TasI AATT 2 cut(s) 327, 443
TauI GCSGC 3 cut(s) 56, 77, 285
TfiI GAWTC 2 cut(s) 209, 353
TseFI GTSAC 2 cut(s) 184, 274
Tsp45I GTSAC 2 cut(s) 184, 274
TspDTI ATGAA 3 cut(s) 187, 407, 519
TspGWI ACGGA 2 cut(s) 424, 504
Tth111I GACNNNGTC 1 cut(s) 229
VpaK11BI GGWCC 2 cut(s) 28, 225
XagI CCTNNNNNAGG 1 cut(s) 299
XapI RAATTY 1 cut(s) 443
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XmiI GTMKAC 2 cut(s) 192, 270
ZraI GACGTC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.