Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012014

Physical Location & Seq

Genomic Coordinates Reverse (-)

3381913 .. 3382479

Gene Structure 567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAACGCCTCTGCCGCCGCCAGCTACGCCTCTGCGCTAGCCGACGTGGCGAACTCGAACAACACCCTTGAAACCACCAGCGGCGACGTGGAAAAGATCGAGAAGTTCTTCGGCGAGCCGTCGGTGTTCGACTTCTTCATCAACCCGACCATCGGCCTGGAGAAGAAGCGGCAGGTGCTGGACGACATCGCCAAGTCGTCGGCGCTGCAGCCGCACACGATCAACTTCCTCAACATCCTGGTGGACGCGAAGCGGATCGACCTGATAAAGGACATCGTGAAGGAGTTCGAGGTGGTGTACAACAAGATAACGGACACGGAGCTGGCGATCGTGAGCTCGGTGGTGAAGCTGGAGTCGCAGCACTTGGCGCAGATAGCGAAGCAGGTGCAGAAGCTGACGGGGGCGAAGAACGTGAGGATCAAGAAGGAGATTGATCCGAGCCTGGTGGCGGGGTTCACGGTGAGGTACGGGCAGTCGGGGTCGAAGCTTATTGACTTGAGCGTGAAGAAGCAGCTGGAGGAGATTGCGGCGGAGCTTGATTTGGGTGACATTAAGCTCAATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009767 GO:0009772 GO:0009773 GO:0009941 GO:0009987 GO:0010033 GO:0010287 GO:0010319 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

OSCP

Protein Analysis

189

Amino Acids

20.6

Weight (kDa)

5.5

Isoelectric Point (pI)

29.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OSCP	PF00213	6 - 179	5.8e-41	ATP synthase delta (OSCP) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09650
fragaria_vesca	FvH4_2g12490
malus_domestica	MD10G1043200.v1.1 MD17G1003000.v1.1
prunus_persica	Prupe.8G048900_v2.0.a1
pyrus_communis	pycom05g03070 pycom10g03020
rosa_chinensis	RchiOBHm_Chr6g0272941
rosa_laevigata	RLG00000008593 RLG00000013654
rosa_multiflora	Rmu_co8370933.1_g000001 Rmu_sc0009966.1_g000013
rosa_roxburghii	Rroxscaffold_7G00195900
rosa_rugosa	Rorug06G0071700
rosa_samantha	Rh6AG187400 Rh6BG190800 Rh6CG189900 Rh6DG181300
rosa_wichuraiana	Rw6G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	565
AarI	CACCTGC	2 cut(s)	163, 373
Acc36I	ACCTGC	2 cut(s)	163, 373
AccII	CGCG	1 cut(s)	248
AciI	CCGC	9 cut(s)	15, 18, 81, 169, 212, 253, 449, 527, 530
AclWI	GGATC	3 cut(s)	263, 425, 428
AfaI	GTAC	2 cut(s)	299, 467
AfiI	CCNNNNNNNGG	3 cut(s)	152, 268, 448
AgsI	TTSAA	1 cut(s)	71
AjiI	CACGTC	2 cut(s)	46, 88
AjnI	CCWGG	3 cut(s)	156, 237, 441
AluBI	AGCT	9 cut(s)	24, 322, 336, 349, 394, 487, 514, 535, 556
AluI	AGCT	9 cut(s)	24, 322, 336, 349, 394, 487, 514, 535, 556
Alw21I	GWGCWC	1 cut(s)	338
AlwI	GGATC	3 cut(s)	263, 425, 428
AlwNI	CAGNNNCTG	2 cut(s)	178, 394
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	4 cut(s)	205, 208, 358, 511
Asp700I	GAANNNNTTC	2 cut(s)	107, 284
AspLEI	GCGC	3 cut(s)	37, 205, 370
AsuHPI	GGTGA	3 cut(s)	355, 472, 557
AsuNHI	GCTAGC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	4 cut(s)	192, 220, 370, 523
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	103
BcgI	CGANNNNNNTGC	2 cut(s)	367, 401
BciT130I	CCWGG	3 cut(s)	158, 239, 443
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	206
BfuAI	ACCTGC	2 cut(s)	163, 373
BglI	GCCNNNNNGGC	1 cut(s)	47
Bme1390I	CCNGG	3 cut(s)	158, 239, 443
BmgBI	CACGTC	2 cut(s)	46, 88
BmrFI	CCNGG	3 cut(s)	158, 239, 443
BmtI	GCTAGC	1 cut(s)	41
BpmI	CTGGAG	3 cut(s)	179, 371, 536
BpuEI	CTTGAG	1 cut(s)	517
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 268, 448
BseBI	CCWGG	3 cut(s)	158, 239, 443
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	3 cut(s)	152, 268, 448
BseRI	GAGGAG	1 cut(s)	533
BseXI	GCAGC	4 cut(s)	192, 220, 370, 523
BsgI	GTGCAG	1 cut(s)	407
Bsh1236I	CGCG	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	156
BsiEI	CGRYCG	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	338
BslI	CCNNNNNNNGG	3 cut(s)	152, 268, 448
BsnI	GGCC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	6 cut(s)	96, 219, 255, 327, 417, 433
BspACI	CCGC	9 cut(s)	15, 18, 81, 169, 212, 253, 449, 527, 530
BspANI	GGCC	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	248
BspMAI	CTGCAG	1 cut(s)	210
BspMI	ACCTGC	2 cut(s)	163, 373
BspOI	GCTAGC	1 cut(s)	41
BspPI	GGATC	3 cut(s)	263, 425, 428
BsrGI	TGTACA	1 cut(s)	297
BssMI	GATC	6 cut(s)	96, 219, 255, 327, 417, 433
Bst2UI	CCWGG	3 cut(s)	158, 239, 443
Bst4CI	ACNGT	1 cut(s)	460
BstAUI	TGTACA	1 cut(s)	297
BstC8I	GCNNGC	4 cut(s)	22, 39, 116, 324
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	1 cut(s)	248
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	3 cut(s)	37, 205, 370
BstKTI	GATC	6 cut(s)	99, 222, 258, 330, 420, 436
BstMBI	GATC	6 cut(s)	96, 219, 255, 327, 417, 433
BstMCI	CGRYCG	1 cut(s)	330
BstMWI	GCNNNNNNNGC	8 cut(s)	14, 26, 47, 175, 211, 355, 367, 374
BstNI	CCWGG	3 cut(s)	158, 239, 443
BstSCI	CCNGG	3 cut(s)	156, 237, 441
BstSFI	CTRYAG	1 cut(s)	206
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	4 cut(s)	192, 220, 370, 523
BstXI	CCANNNNNNTGG	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	156
BtgZI	GCGATG	1 cut(s)	172
BtrI	CACGTC	2 cut(s)	46, 88
BtsCI	GGATG	1 cut(s)	234
BveI	ACCTGC	2 cut(s)	163, 373
Cac8I	GCNNGC	4 cut(s)	22, 39, 116, 324
CaiI	CAGNNNCTG	2 cut(s)	178, 394
CfoI	GCGC	3 cut(s)	37, 205, 370
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	298, 466
CviQI	GTAC	2 cut(s)	298, 466
DpnI	GATC	6 cut(s)	98, 221, 257, 329, 419, 435
DpnII	GATC	6 cut(s)	96, 219, 255, 327, 417, 433
EciI	GGCGGA	1 cut(s)	545
Ecl136II	GAGCTC	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	338
Eco53kI	GAGCTC	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	336
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoRII	CCWGG	3 cut(s)	156, 237, 441
EcoT38I	GRGCYC	1 cut(s)	338
FaiI	YATR	1 cut(s)	565
FauI	CCCGC	1 cut(s)	442
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	338
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	3 cut(s)	36, 204, 369
GsuI	CTGGAG	3 cut(s)	179, 371, 536
HaeII	RGCGCY	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	156
HgaI	GACGC	1 cut(s)	254
HhaI	GCGC	3 cut(s)	37, 205, 370
Hin6I	GCGC	3 cut(s)	35, 203, 368
HinP1I	GCGC	3 cut(s)	35, 203, 368
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	1 cut(s)	353
HphI	GGTGA	3 cut(s)	355, 472, 557
Hpy166II	GTNNAC	3 cut(s)	244, 298, 456
Hpy188I	TCNGA	1 cut(s)	438
Hpy188III	TCNNGA	4 cut(s)	100, 277, 331, 421
Hpy8I	GTNNAC	3 cut(s)	244, 298, 456
Hpy99I	CGWCG	4 cut(s)	47, 89, 124, 202
HpyAV	CCTTC	2 cut(s)	274, 418
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4IV	ACGT	3 cut(s)	45, 87, 411
HpyCH4V	TGCA	2 cut(s)	208, 388
HpyF10VI	GCNNNNNNNGC	8 cut(s)	14, 26, 47, 175, 211, 355, 367, 374
HpySE526I	ACGT	3 cut(s)	45, 87, 411
HspAI	GCGC	3 cut(s)	35, 203, 368
Kzo9I	GATC	6 cut(s)	96, 219, 255, 327, 417, 433
LmnI	GCTCC	2 cut(s)	319, 532
Lsp1109I	GCAGC	4 cut(s)	192, 220, 370, 523
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	3 cut(s)	45, 87, 411
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	6 cut(s)	98, 221, 257, 329, 419, 435
MboI	GATC	6 cut(s)	96, 219, 255, 327, 417, 433
MboII	GAAGA	5 cut(s)	100, 127, 175, 418, 517
MhlI	GDGCHC	1 cut(s)	338
MluCI	AATT	1 cut(s)	559
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	7 cut(s)	19, 40, 239, 283, 408, 456, 511
MroXI	GAANNNNTTC	2 cut(s)	107, 284
MseI	TTAA	1 cut(s)	552
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	2 cut(s)	81, 514
MspR9I	CCNGG	3 cut(s)	158, 239, 443
MvaI	CCWGG	3 cut(s)	158, 239, 443
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	8 cut(s)	14, 26, 47, 175, 211, 355, 367, 374
NdeII	GATC	6 cut(s)	96, 219, 255, 327, 417, 433
NheI	GCTAGC	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	545
PaqCI	CACCTGC	2 cut(s)	163, 373
PcsI	WCGNNNNNNNCGW	1 cut(s)	323
PdmI	GAANNNNTTC	2 cut(s)	107, 284
Ple19I	CGATCG	1 cut(s)	330
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PsiI	TTATAA	1 cut(s)	565
Psp124BI	GAGCTC	1 cut(s)	338
Psp6I	CCWGG	3 cut(s)	156, 237, 441
PspGI	CCWGG	3 cut(s)	156, 237, 441
PstI	CTGCAG	1 cut(s)	210
PstNI	CAGNNNCTG	2 cut(s)	178, 394
PvuI	CGATCG	1 cut(s)	330
PvuII	CAGCTG	1 cut(s)	514
RsaI	GTAC	2 cut(s)	299, 467
RsaNI	GTAC	2 cut(s)	298, 466
RseI	CAYNNNNRTG	1 cut(s)	239
SacI	GAGCTC	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	552
Sau3AI	GATC	6 cut(s)	96, 219, 255, 327, 417, 433
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	3 cut(s)	158, 239, 443
SduI	GDGCHC	1 cut(s)	338
SfcI	CTRYAG	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	496
SmoI	CTYRAG	1 cut(s)	496
Sse9I	AATT	1 cut(s)	559
SsiI	CCGC	9 cut(s)	15, 18, 81, 169, 212, 253, 449, 527, 530
SspMI	CTAG	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	338
StyD4I	CCNGG	3 cut(s)	156, 237, 441
TaaI	ACNGT	1 cut(s)	460
TaiI	ACGT	3 cut(s)	48, 90, 414
TaqI	TCGA	6 cut(s)	56, 99, 129, 258, 288, 482
TasI	AATT	1 cut(s)	559
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	6 cut(s)	17, 20, 84, 172, 214, 530
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	4 cut(s)	205, 208, 358, 511
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	2 cut(s)	17, 127
TspGWI	ACGGA	2 cut(s)	326, 332
XagI	CCTNNNNNAGG	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XmnI	GAANNNNTTC	2 cut(s)	107, 284
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.