pycom10g03370

Protein LOW PSII ACCUMULATION 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0008650
Physical Location & Seq
Forward (+)
3697630 .. 3703068
5439 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1284 bp
ATGTGTGGAGCAAGAGCAGAGTCCTTCAAATTCCTTATCATCATTCGTCTAATAATCCATTTCGGTTTCTTTTCCCTCCACCTCTCTCCCGCACACCAAAATCCCCAAAACACTGAGATGGCCATGGCCATGGCCTTGTCATCAACACCTCGCATTCTCTCTCCTTATTGCCCAACTCACCACTCAATTCTGTCTCACACTTCTCTCTCTTCCTTACCCAGGACTGGCACCACCCTCTCCGCCTTCTCAACTTCTCCAGCGCTTCCGAAATCTCCATCGAATAGCAGAAGCATCAAGTGCGTCGATAAGGCCTCTTCGGCTTCGAGGGCCGATCCAACGTCTGGAATTGCAGTCTACAAGCCAAAGTCCTATGAAGTTCTCGTTACTGATGCTGCAAGATCGCTTGCTTATGCTCTCGAAGACGGGAAGACCCGCTTGGAGATTGATTTCCCTCCCCTGCCTAGCGACATATCTTCTTATAAGGGGTCTTCAGATGAATTCATTGATGCGAACGTACAACTTGTCTTGGCTGTTGTAAGGAAGCTCAAAGAAATAAGGGAAACAAGAGCTTGCATTGTGTTTCCTGATAAGCCAGAAAAGCGCAGGGCCTCTGAGCAGTTCAAAACGGCTATCGACTCACTCGATGATATAACAATAGGTTCCCTGGATGATGTCCCCAGTGGTCCAGTCACCAAGTTCTTCCAATCTATAAGGGACACACTTGATTTTGACTTTGAAGATGAAAATGAAGGTCGCTGGGCATCCAGTCAACCTCCCTCTCTTTATATATTCATAAATTGTAGCACTCGTGAGCTTGCTCCAATAGAGAAGTATGTGGAAACATTTGCCATGTCGACCCCAACACTTCTATTTAATCTTGAACTAGACACATTGCGTGCTGACTTGGGCCTTTTTGGCTTTCCAACCAAAGATTTGCACTATCGCTTTCTTTCTCAATTTACACCAGTGTTCTATATCCGAATAAGAGATTACTCAAAGACAGTAGCAGTAGCGCCTTATATAGTGAATTACAGTGGAGCACTATTTCGCCAATACCCTGGGCCTTGGCAGGTAATGCTAAAACAAGCCGATGGTTCTTATGCTTGCGTAGCAGAGAGTGCAACACGCTTTACTCTGGGCGAAACAAAAGAAGAACTTTTGAGGGTCCTGGGACTGCAAGAGGAACAAGGAAGCTCGCTGCAATTTCTTCGTAGAGGCTACAGGAGTGCTACTTGGTGGGAAGAAGATGTGGAGTTGGAAGAATCTTCTGCTTGGCGTAATTGA

Protein Analysis

428

Amino Acids

47.89

Weight (kDa)

5.77

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1995 PF09353 121 - 383 2.5e-48 Domain of unknown function (DUF1995)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 480
Acc36I ACCTGC 1 cut(s) 1060
AccB1I GGYRCC 1 cut(s) 227
AccB7I CCANNNNNTGG 1 cut(s) 341
AccI GTMKAC 2 cut(s) 354, 854
AciI CCGC 3 cut(s) 90, 240, 433
AclWI GGATC 1 cut(s) 326
AcoI YGGCCR 2 cut(s) 120, 126
AcsI RAATTY 2 cut(s) 29, 497
AcuI CTGAAG 1 cut(s) 474
AfaI GTAC 1 cut(s) 516
AfeI AGCGCT 1 cut(s) 261
AfiI CCNNNNNNNGG 3 cut(s) 219, 224, 341
AgsI TTSAA 4 cut(s) 28, 622, 737, 881
AjnI CCWGG 4 cut(s) 218, 663, 1057, 1167
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AluBI AGCT 4 cut(s) 544, 569, 814, 1194
AluI AGCT 4 cut(s) 544, 569, 814, 1194
Alw21I GWGCWC 1 cut(s) 1042
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 1 cut(s) 326
Aor51HI AGCGCT 1 cut(s) 261
AoxI GGCC 8 cut(s) 120, 126, 132, 309, 327, 606, 907, 1061
ApeKI GCWGC 2 cut(s) 392, 1198
ApoI RAATTY 2 cut(s) 29, 497
AspLEI GCGC 3 cut(s) 262, 603, 1015
AspS9I GGNCC 6 cut(s) 327, 606, 683, 907, 1061, 1165
AsuHPI GGTGA 2 cut(s) 170, 682
AvaII GGWCC 2 cut(s) 683, 1165
BalI TGGCCA 2 cut(s) 122, 128
BanI GGYRCC 1 cut(s) 227
BauI CACGAG 1 cut(s) 807
BbsI GAAGAC 3 cut(s) 426, 434, 480
Bbv12I GWGCWC 1 cut(s) 1042
BbvI GCAGC 2 cut(s) 379, 1185
BccI CCATC 3 cut(s) 112, 283, 1085
BceAI ACGGC 1 cut(s) 642
BcgI CGANNNNNNTGC 2 cut(s) 1190, 1224
BciT130I CCWGG 4 cut(s) 220, 665, 1059, 1169
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 2 cut(s) 462, 884
BfmI CTRYAG 1 cut(s) 1219
BfoI RGCGCY 2 cut(s) 263, 1016
BfuAI ACCTGC 1 cut(s) 1060
BglI GCCNNNNNGGC 2 cut(s) 317, 915
BisI GCNGC 2 cut(s) 393, 1199
BlsI GCNGC 2 cut(s) 394, 1200
Bme1390I CCNGG 4 cut(s) 220, 665, 1059, 1169
Bme18I GGWCC 2 cut(s) 683, 1165
BmgT120I GGNCC 6 cut(s) 327, 606, 683, 907, 1061, 1165
BmiI GGNNCC 3 cut(s) 229, 661, 1166
BmrFI CCNGG 4 cut(s) 220, 665, 1059, 1169
BmrI ACTGGG 1 cut(s) 672
BmsI GCATC 4 cut(s) 300, 379, 496, 770
BmuI ACTGGG 1 cut(s) 672
BpiI GAAGAC 3 cut(s) 426, 434, 480
BpmI CTGGAG 1 cut(s) 240
BsaJI CCNNGG 8 cut(s) 123, 129, 218, 663, 1057, 1058, 1064, 1168
Bsc4I CCNNNNNNNGG 3 cut(s) 219, 224, 341
Bse1I ACTGG 5 cut(s) 229, 678, 686, 765, 965
Bse3DI GCAATG 1 cut(s) 890
BseBI CCWGG 4 cut(s) 220, 665, 1059, 1169
BseDI CCNNGG 8 cut(s) 123, 129, 218, 663, 1057, 1058, 1064, 1168
BseGI GGATG 2 cut(s) 673, 761
BseLI CCNNNNNNNGG 3 cut(s) 219, 224, 341
BseMI GCAATG 1 cut(s) 890
BseMII CTCAG 2 cut(s) 105, 603
BseNI ACTGG 5 cut(s) 229, 678, 686, 765, 965
BseXI GCAGC 2 cut(s) 379, 1185
BseYI CCCAGC 1 cut(s) 756
BshFI GGCC 8 cut(s) 122, 128, 134, 311, 329, 608, 909, 1063
BshNI GGYRCC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 1042
BslFI GGGAC 3 cut(s) 659, 728, 1185
BslI CCNNNNNNNGG 3 cut(s) 219, 224, 341
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 3 cut(s) 659, 728, 1185
BsmI GAATGC 1 cut(s) 153
BsnI GGCC 8 cut(s) 122, 128, 134, 311, 329, 608, 909, 1063
Bsp1286I GDGCHC 1 cut(s) 1042
Bsp143I GATC 2 cut(s) 331, 398
Bsp19I CCATGG 2 cut(s) 123, 129
BspACI CCGC 3 cut(s) 90, 240, 433
BspANI GGCC 8 cut(s) 122, 128, 134, 311, 329, 608, 909, 1063
BspCNI CTCAG 2 cut(s) 106, 604
BspLI GGNNCC 3 cut(s) 229, 661, 1166
BspMI ACCTGC 1 cut(s) 1060
BspPI GGATC 1 cut(s) 326
BspT107I GGYRCC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 890
BsrI ACTGG 5 cut(s) 229, 678, 686, 765, 965
BssECI CCNNGG 8 cut(s) 123, 129, 218, 663, 1057, 1058, 1064, 1168
BssMI GATC 2 cut(s) 331, 398
BssSI CACGAG 1 cut(s) 807
BssT1I CCWWGG 3 cut(s) 123, 129, 1064
Bst2BI CACGAG 1 cut(s) 807
Bst2UI CCWGG 4 cut(s) 220, 665, 1059, 1169
Bst4CI ACNGT 2 cut(s) 1003, 1034
Bst6I CTCTTC 2 cut(s) 214, 319
BstAPI GCANNNNNTGC 3 cut(s) 297, 1075, 1118
BstC8I GCNNGC 6 cut(s) 405, 571, 816, 897, 1105, 1196
BstDEI CTNAG 2 cut(s) 114, 612
BstDSI CCRYGG 2 cut(s) 123, 129
BstENI CCTNNNNNAGG 1 cut(s) 217
BstF5I GGATG 2 cut(s) 673, 761
BstH2I RGCGCY 2 cut(s) 263, 1016
BstHHI GCGC 3 cut(s) 262, 603, 1015
BstKTI GATC 2 cut(s) 334, 401
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 2 cut(s) 331, 398
BstMWI GCNNNNNNNGC 8 cut(s) 297, 317, 326, 598, 915, 1075, 1109, 1118
BstNI CCWGG 4 cut(s) 220, 665, 1059, 1169
BstSCI CCNGG 4 cut(s) 218, 663, 1057, 1167
BstSFI CTRYAG 1 cut(s) 1219
BstV1I GCAGC 2 cut(s) 379, 1185
BstV2I GAAGAC 3 cut(s) 426, 434, 480
BstXI CCANNNNNNTGG 2 cut(s) 130, 1058
BsuRI GGCC 8 cut(s) 122, 128, 134, 311, 329, 608, 909, 1063
BtgI CCRYGG 2 cut(s) 123, 129
BtsCI GGATG 2 cut(s) 673, 761
BtsIMutI CAGTG 4 cut(s) 111, 685, 972, 1039
BveI ACCTGC 1 cut(s) 1060
Cac8I GCNNGC 6 cut(s) 405, 571, 816, 897, 1105, 1196
CfoI GCGC 3 cut(s) 262, 603, 1015
Cfr13I GGNCC 6 cut(s) 327, 606, 683, 907, 1061, 1165
CseI GACGC 1 cut(s) 289
Csp6I GTAC 1 cut(s) 515
CviAII CATG 3 cut(s) 124, 130, 850
CviQI GTAC 1 cut(s) 515
DdeI CTNAG 2 cut(s) 114, 612
DpnI GATC 2 cut(s) 333, 400
DpnII GATC 2 cut(s) 331, 398
EaeI YGGCCR 2 cut(s) 120, 126
Eam1104I CTCTTC 2 cut(s) 214, 319
EarI CTCTTC 2 cut(s) 214, 319
EciI GGCGGA 1 cut(s) 229
Eco130I CCWWGG 3 cut(s) 123, 129, 1064
Eco147I AGGCCT 1 cut(s) 311
Eco47I GGWCC 2 cut(s) 683, 1165
Eco47III AGCGCT 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 474
EcoNI CCTNNNNNAGG 1 cut(s) 217
EcoO109I RGGNCCY 2 cut(s) 606, 1165
EcoRI GAATTC 1 cut(s) 497
EcoRII CCWGG 4 cut(s) 218, 663, 1057, 1167
EcoT14I CCWWGG 3 cut(s) 123, 129, 1064
ErhI CCWWGG 3 cut(s) 123, 129, 1064
FaeI CATG 3 cut(s) 127, 133, 853
FalI AAGNNNNNCTT 4 cut(s) 419, 451, 1140, 1172
FaqI GGGAC 3 cut(s) 659, 728, 1185
FatI CATG 3 cut(s) 123, 129, 849
FauI CCCGC 2 cut(s) 97, 440
FblI GTMKAC 2 cut(s) 354, 854
Fnu4HI GCNGC 2 cut(s) 393, 1199
FokI GGATG 2 cut(s) 680, 748
Fsp4HI GCNGC 2 cut(s) 393, 1199
FspBI CTAG 2 cut(s) 462, 884
GlaI GCGC 3 cut(s) 261, 602, 1014
GluI GCNGC 2 cut(s) 393, 1199
GsaI CCCAGC 1 cut(s) 760
GsuI CTGGAG 1 cut(s) 240
HaeII RGCGCY 2 cut(s) 263, 1016
HaeIII GGCC 8 cut(s) 122, 128, 134, 311, 329, 608, 909, 1063
HgaI GACGC 1 cut(s) 289
HhaI GCGC 3 cut(s) 262, 603, 1015
Hin1II CATG 3 cut(s) 127, 133, 853
Hin6I GCGC 3 cut(s) 260, 601, 1013
HinP1I GCGC 3 cut(s) 260, 601, 1013
HincII GTYRAC 2 cut(s) 770, 855
HindII GTYRAC 2 cut(s) 770, 855
HinfI GANTC 3 cut(s) 20, 635, 1262
HphI GGTGA 2 cut(s) 170, 682
Hpy166II GTNNAC 3 cut(s) 355, 770, 855
Hpy188I TCNGA 4 cut(s) 267, 493, 613, 980
Hpy188III TCNNGA 5 cut(s) 342, 416, 584, 809, 878
Hpy8I GTNNAC 3 cut(s) 355, 770, 855
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 3 cut(s) 34, 253, 743
HpyCH4III ACNGT 2 cut(s) 1003, 1034
HpyCH4IV ACGT 2 cut(s) 338, 513
HpyCH4V TGCA 7 cut(s) 350, 395, 573, 937, 1121, 1177, 1201
HpyF10VI GCNNNNNNNGC 8 cut(s) 297, 317, 326, 598, 915, 1075, 1109, 1118
HpyF3I CTNAG 2 cut(s) 114, 612
HpySE526I ACGT 2 cut(s) 338, 513
Hsp92II CATG 3 cut(s) 127, 133, 853
HspAI GCGC 3 cut(s) 260, 601, 1013
Kzo9I GATC 2 cut(s) 331, 398
LmnI GCTCC 3 cut(s) 8, 823, 1037
Lsp1109I GCAGC 2 cut(s) 379, 1185
LweI GCATC 4 cut(s) 300, 379, 496, 770
MaeI CTAG 2 cut(s) 462, 884
MaeII ACGT 2 cut(s) 338, 513
MaeIII GTNAC 2 cut(s) 382, 688
MalI GATC 2 cut(s) 333, 400
MboI GATC 2 cut(s) 331, 398
MhlI GDGCHC 1 cut(s) 1042
MlsI TGGCCA 2 cut(s) 122, 128
MluCI AATT 9 cut(s) 29, 186, 345, 497, 796, 956, 1027, 1202, 1279
MluNI TGGCCA 2 cut(s) 122, 128
MlyI GAGTC 2 cut(s) 29, 629
MmeI TCCRAC 3 cut(s) 359, 947, 1236
Mox20I TGGCCA 2 cut(s) 122, 128
MscI TGGCCA 2 cut(s) 122, 128
MseI TTAA 1 cut(s) 873
MslI CAYNNNNRTG 2 cut(s) 116, 128
Msp20I TGGCCA 2 cut(s) 122, 128
MspR9I CCNGG 4 cut(s) 220, 665, 1059, 1169
Mva1269I GAATGC 1 cut(s) 153
MvaI CCWGG 4 cut(s) 220, 665, 1059, 1169
MwoI GCNNNNNNNGC 8 cut(s) 297, 317, 326, 598, 915, 1075, 1109, 1118
NcoI CCATGG 2 cut(s) 123, 129
NdeII GATC 2 cut(s) 331, 398
NlaIII CATG 3 cut(s) 127, 133, 853
NlaIV GGNNCC 3 cut(s) 229, 661, 1166
NmuCI GTSAC 1 cut(s) 688
PasI CCCWGGG 1 cut(s) 1058
PceI AGGCCT 1 cut(s) 311
PcsI WCGNNNNNNNCGW 1 cut(s) 639
PctI GAATGC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 1262
PflMI CCANNNNNTGG 1 cut(s) 341
PkrI GCNGC 2 cut(s) 394, 1200
PleI GAGTC 2 cut(s) 28, 629
PpsI GAGTC 2 cut(s) 28, 629
PpuMI RGGWCCY 1 cut(s) 1165
PsiI TTATAA 1 cut(s) 480
Psp5II RGGWCCY 1 cut(s) 1165
Psp6I CCWGG 4 cut(s) 218, 663, 1057, 1167
PspFI CCCAGC 1 cut(s) 756
PspGI CCWGG 4 cut(s) 218, 663, 1057, 1167
PspN4I GGNNCC 3 cut(s) 229, 661, 1166
PspPI GGNCC 6 cut(s) 327, 606, 683, 907, 1061, 1165
PspPPI RGGWCCY 1 cut(s) 1165
RsaI GTAC 1 cut(s) 516
RsaNI GTAC 1 cut(s) 515
RseI CAYNNNNRTG 2 cut(s) 116, 128
SalI GTCGAC 1 cut(s) 853
SaqAI TTAA 1 cut(s) 873
SatI GCNGC 2 cut(s) 393, 1199
Sau3AI GATC 2 cut(s) 331, 398
Sau96I GGNCC 6 cut(s) 327, 606, 683, 907, 1061, 1165
SchI GAGTC 2 cut(s) 29, 629
ScrFI CCNGG 4 cut(s) 220, 665, 1059, 1169
SduI GDGCHC 1 cut(s) 1042
SfaNI GCATC 4 cut(s) 300, 379, 496, 770
SfcI CTRYAG 1 cut(s) 1219
SinI GGWCC 2 cut(s) 683, 1165
SmiMI CAYNNNNRTG 2 cut(s) 116, 128
Sse9I AATT 9 cut(s) 29, 186, 345, 497, 796, 956, 1027, 1202, 1279
SseBI AGGCCT 1 cut(s) 311
SsiI CCGC 3 cut(s) 90, 240, 433
SspMI CTAG 2 cut(s) 462, 884
StuI AGGCCT 1 cut(s) 311
StyD4I CCNGG 4 cut(s) 218, 663, 1057, 1167
StyI CCWWGG 3 cut(s) 123, 129, 1064
TaaI ACNGT 2 cut(s) 1003, 1034
TaiI ACGT 2 cut(s) 341, 516
TaqI TCGA 7 cut(s) 278, 303, 323, 417, 633, 642, 854
TasI AATT 9 cut(s) 29, 186, 345, 497, 796, 956, 1027, 1202, 1279
TfiI GAWTC 1 cut(s) 1262
Tru1I TTAA 1 cut(s) 873
Tru9I TTAA 1 cut(s) 873
TscAI CASTG 4 cut(s) 118, 685, 972, 1039
TseFI GTSAC 1 cut(s) 688
TseI GCWGC 2 cut(s) 392, 1198
Tsp45I GTSAC 1 cut(s) 688
TspDTI ATGAA 6 cut(s) 387, 490, 510, 756, 762, 781
TspRI CASTG 4 cut(s) 118, 685, 972, 1039
Van91I CCANNNNNTGG 1 cut(s) 341
VpaK11BI GGWCC 2 cut(s) 683, 1165
XagI CCTNNNNNAGG 1 cut(s) 217
XapI RAATTY 2 cut(s) 29, 497
XmiI GTMKAC 2 cut(s) 354, 854
XspI CTAG 2 cut(s) 462, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.