Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0014654

Physical Location & Seq

Genomic Coordinates Forward (+)

4394336 .. 4403851

Gene Structure 9516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g04120.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGTCTGGGTCGGATGCTTGTGCTCTTTCTAGTTCTTCAAATCATCAAAGTAAGCAAGTTTTTATAATTTCAGATGACAATGACAGATTTGAGAAATGCTCCTCATCAACTTTGGCCGTTAGTCCATTAGAGAATGAAGCTCCATTAGAAGAACAAGCATCAAAGCCAAGTTCTGGTGGATATGCAAGGGTTGAAGAAGCTACACTCAACCTTCATCTTAAATCAATGGATTCTAGAGGAGCTGGAAATGCAAATAAAGATTCAGGCATTGAGCAGTTGAGCTGTTCTGTTTATGAACCTCATGTGGACAAAGAGGAAGATACTAAATCATTGGATGAGAGTGCCGATAAGCCTTTTGAAGTGAGTTATCCAGAAGGAGATCCTGATTCAGTTTCTATAAGTAAGAGAGATCTTGAGCTTCTACAGCCGGAGAAATTCATTAATGACACTATAGTTGACTTTTATATTCAATATTTAAAAAGTAAAATTCAACCTGAGGAAAAGCATAGGTTCCACTTCTTCAATAGTTTTTTCTTTCGGAAACTTGCTGATCTAGACAAAGACCAACCAAGTGCCTGTGAAGGCAAGGCAGCATTTCAGGTTGTTCATAAATGGACTAGGAAAGTGAATGTGTTTGAAAAGGATTATATCTTCATTCCTGTAAACTACAGTCTCCATTGGAGTTTGATTGTCATTTGTCATCCTGGAGAAGTGGTTAATATCAAAGATGAGAAAATTGAAAGCTTATCAAAGGTTCCATGCATCTTGCACATGGATTCAATTAAAGGAAGTCATAGAGGCCTCGAGAATCTTGTTCGAAGATACCTATGTGAAGAGTGGAAAGAGAGGCATGGTGACACATCAGAAGATGATTATTCAAAATTCTTACATTTGAGATTTGTAGCACTGAAGTTACCACAACAGGAAAATTCATTTGACTGTGGCCTCTTTTTGCTTCATTATGTGGAATGTTTTCTGGAGGAAGCTCCTGTCAACTTTAGCCCTTTGGAAATCACAAAGTCCTCCAAATTTCTCACAAAAAGTTGGTTCCGTCCTGAGGAAGCTTCTGCCAAACGATCGATCATATTAAGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070011 GO:0070137 GO:0070139 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

366

Amino Acids

41.69

Weight (kDa)

5.39

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11700 FvH4_2g11700
prunus_persica	Prupe.8G069500_v2.0.a1 Prupe.8G069500_v2.0.a1
pyrus_communis	pycom10g04120
rosa_chinensis	RchiOBHm_Chr6g0271021
rosa_laevigata	RLG00000013750 RLG00000013751 RLG00000013752
rosa_roxburghii	Rroxscaffold_7G00197420
rosa_rugosa	Rorug06G0057600 Rorug06G0057700
rosa_samantha	Rh6AG177600 Rh6BG180900 Rh6CG176900 Rh6DG169100
rosa_wichuraiana	Rw6G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	65
AccB7I	CCANNNNNTGG	1 cut(s)	173
AclWI	GGATC	1 cut(s)	374
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	5 cut(s)	434, 486, 881, 928, 1028
AcuI	CTGAAG	1 cut(s)	929
AfiI	CCNNNNNNNGG	2 cut(s)	173, 1057
AjnI	CCWGG	1 cut(s)	703
AluBI	AGCT	8 cut(s)	140, 200, 242, 282, 418, 744, 986, 1064
AluI	AGCT	8 cut(s)	140, 200, 242, 282, 418, 744, 986, 1064
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	677
AlwI	GGATC	1 cut(s)	374
Ama87I	CYCGRG	1 cut(s)	803
AoxI	GGCC	3 cut(s)	114, 799, 943
ApeKI	GCWGC	1 cut(s)	590
ApoI	RAATTY	5 cut(s)	434, 486, 881, 928, 1028
AseI	ATTAAT	1 cut(s)	441
Asp700I	GAANNNNTTC	1 cut(s)	972
AsuHPI	GGTGA	1 cut(s)	866
AsuII	TTCGAA	1 cut(s)	817
AvaI	CYCGRG	1 cut(s)	803
AxyI	CCTNAGG	2 cut(s)	495, 1056
BaeI	ACNNNNGTAYC	2 cut(s)	814, 847
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	602
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	705
BcoDI	GTCTC	1 cut(s)	677
BfaI	CTAG	4 cut(s)	30, 234, 554, 618
BfmI	CTRYAG	3 cut(s)	422, 450, 667
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	1 cut(s)	591
BlsI	GCNGC	1 cut(s)	592
Bme1390I	CCNGG	1 cut(s)	705
BmeT110I	CYCGRG	1 cut(s)	803
BmiI	GGNNCC	3 cut(s)	512, 756, 1049
BmrFI	CCNGG	1 cut(s)	705
BmsI	GCATC	3 cut(s)	4, 167, 771
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	2 cut(s)	726, 998
Bpu14I	TTCGAA	1 cut(s)	817
BpuEI	CTTGAG	1 cut(s)	434
Bsa29I	ATCGAT	1 cut(s)	1079
BsaXI	ACNNNNNCTCC	2 cut(s)	699, 729
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 1057
Bse21I	CCTNAGG	2 cut(s)	495, 1056
BseBI	CCWGG	1 cut(s)	705
BseCI	ATCGAT	1 cut(s)	1079
BseGI	GGATG	3 cut(s)	19, 340, 700
BseLI	CCNNNNNNNGG	2 cut(s)	173, 1057
BseMII	CTCAG	2 cut(s)	486, 1047
BseRI	GAGGAG	2 cut(s)	91, 252
BseXI	GCAGC	1 cut(s)	602
Bsh1285I	CGRYCG	1 cut(s)	1079
BshFI	GGCC	3 cut(s)	116, 801, 945
BshVI	ATCGAT	1 cut(s)	1079
BsiEI	CGRYCG	1 cut(s)	1079
BsiHKAI	GWGCWC	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	803
BsiSI	CCGG	1 cut(s)	428
BslI	CCNNNNNNNGG	2 cut(s)	173, 1057
BsmAI	GTCTC	1 cut(s)	677
BsnI	GGCC	3 cut(s)	116, 801, 945
BsoBI	CYCGRG	1 cut(s)	803
Bsp119I	TTCGAA	1 cut(s)	817
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	5 cut(s)	379, 409, 550, 1076, 1080
BspANI	GGCC	3 cut(s)	116, 801, 945
BspCNI	CTCAG	2 cut(s)	487, 1048
BspDI	ATCGAT	1 cut(s)	1079
BspLI	GGNNCC	3 cut(s)	512, 756, 1049
BspPI	GGATC	1 cut(s)	374
BspT104I	TTCGAA	1 cut(s)	817
BssMI	GATC	5 cut(s)	379, 409, 550, 1076, 1080
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	2 cut(s)	671, 941
Bst6I	CTCTTC	1 cut(s)	828
BstBI	TTCGAA	1 cut(s)	817
BstDEI	CTNAG	2 cut(s)	495, 1056
BstF5I	GGATG	3 cut(s)	19, 340, 700
BstKTI	GATC	5 cut(s)	382, 412, 553, 1079, 1083
BstMAI	GTCTC	1 cut(s)	677
BstMBI	GATC	5 cut(s)	379, 409, 550, 1076, 1080
BstMCI	CGRYCG	1 cut(s)	1079
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 424
BstNI	CCWGG	1 cut(s)	705
BstSCI	CCNGG	1 cut(s)	703
BstSFI	CTRYAG	3 cut(s)	422, 450, 667
BstV1I	GCAGC	1 cut(s)	602
BstX2I	RGATCY	2 cut(s)	379, 409
BstYI	RGATCY	2 cut(s)	379, 409
Bsu15I	ATCGAT	1 cut(s)	1079
Bsu36I	CCTNAGG	2 cut(s)	495, 1056
BsuRI	GGCC	3 cut(s)	116, 801, 945
BsuTUI	ATCGAT	1 cut(s)	1079
BtsCI	GGATG	3 cut(s)	19, 340, 700
BtsIMutI	CAGTG	1 cut(s)	905
ClaI	ATCGAT	1 cut(s)	1079
CviAII	CATG	4 cut(s)	302, 759, 772, 851
DdeI	CTNAG	2 cut(s)	495, 1056
DpnI	GATC	5 cut(s)	381, 411, 552, 1078, 1082
DpnII	GATC	5 cut(s)	379, 409, 550, 1076, 1080
DraI	TTTAAA	1 cut(s)	477
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	828
EarI	CTCTTC	1 cut(s)	828
Eco147I	AGGCCT	1 cut(s)	801
Eco57I	CTGAAG	1 cut(s)	929
Eco81I	CCTNAGG	2 cut(s)	495, 1056
Eco88I	CYCGRG	1 cut(s)	803
EcoRII	CCWGG	1 cut(s)	703
EcoT22I	ATGCAT	1 cut(s)	764
FaeI	CATG	4 cut(s)	305, 762, 775, 854
FatI	CATG	4 cut(s)	301, 758, 771, 850
Fnu4HI	GCNGC	1 cut(s)	591
FokI	GGATG	3 cut(s)	26, 347, 687
Fsp4HI	GCNGC	1 cut(s)	591
FspBI	CTAG	4 cut(s)	30, 234, 554, 618
GluI	GCNGC	1 cut(s)	591
GsuI	CTGGAG	2 cut(s)	726, 998
HaeIII	GGCC	3 cut(s)	116, 801, 945
HapII	CCGG	1 cut(s)	428
Hin1II	CATG	4 cut(s)	305, 762, 775, 854
HincII	GTYRAC	2 cut(s)	457, 994
HindII	GTYRAC	2 cut(s)	457, 994
HindIII	AAGCTT	2 cut(s)	742, 1062
HinfI	GANTC	5 cut(s)	230, 260, 386, 776, 808
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	1 cut(s)	866
Hpy166II	GTNNAC	4 cut(s)	307, 457, 664, 994
Hpy188I	TCNGA	4 cut(s)	13, 73, 540, 865
Hpy188III	TCNNGA	8 cut(s)	234, 371, 383, 413, 554, 805, 977, 1055
Hpy8I	GTNNAC	4 cut(s)	307, 457, 664, 994
HpyAV	CCTTC	3 cut(s)	221, 368, 575
HpyCH4III	ACNGT	2 cut(s)	671, 941
HpyCH4V	TGCA	4 cut(s)	185, 251, 762, 769
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 424
HpyF3I	CTNAG	2 cut(s)	495, 1056
Hsp92II	CATG	4 cut(s)	305, 762, 775, 854
Kzo9I	GATC	5 cut(s)	379, 409, 550, 1076, 1080
LmnI	GCTCC	4 cut(s)	104, 145, 239, 991
Lsp1109I	GCAGC	1 cut(s)	602
LweI	GCATC	3 cut(s)	4, 167, 771
MaeI	CTAG	4 cut(s)	30, 234, 554, 618
MaeIII	GTNAC	2 cut(s)	854, 912
MalI	GATC	5 cut(s)	381, 411, 552, 1078, 1082
MboI	GATC	5 cut(s)	379, 409, 550, 1076, 1080
MboII	GAAGA	9 cut(s)	27, 161, 206, 329, 511, 643, 831, 845, 878
MflI	RGATCY	2 cut(s)	379, 409
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	8 cut(s)	66, 434, 486, 735, 780, 881, 928, 1028
Mph1103I	ATGCAT	1 cut(s)	764
MroXI	GAANNNNTTC	1 cut(s)	972
MseI	TTAA	7 cut(s)	219, 441, 476, 717, 783, 1088, 1096
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	705
MvaI	CCWGG	1 cut(s)	705
MwoI	GCNNNNNNNGC	2 cut(s)	248, 424
NdeII	GATC	5 cut(s)	379, 409, 550, 1076, 1080
NlaIII	CATG	4 cut(s)	305, 762, 775, 854
NlaIV	GGNNCC	3 cut(s)	512, 756, 1049
NmuCI	GTSAC	1 cut(s)	854
NsiI	ATGCAT	1 cut(s)	764
NspV	TTCGAA	1 cut(s)	817
PaeR7I	CTCGAG	1 cut(s)	803
PceI	AGGCCT	1 cut(s)	801
PdmI	GAANNNNTTC	1 cut(s)	972
PfeI	GAWTC	5 cut(s)	230, 260, 386, 776, 808
PflMI	CCANNNNNTGG	1 cut(s)	173
PfoI	TCCNGGA	1 cut(s)	703
PkrI	GCNGC	1 cut(s)	592
Ple19I	CGATCG	1 cut(s)	1079
PshBI	ATTAAT	1 cut(s)	441
PsiI	TTATAA	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	703
PspGI	CCWGG	1 cut(s)	703
PspN4I	GGNNCC	3 cut(s)	512, 756, 1049
PsuI	RGATCY	2 cut(s)	379, 409
PvuI	CGATCG	1 cut(s)	1079
SaqAI	TTAA	7 cut(s)	219, 441, 476, 717, 783, 1088, 1096
SatI	GCNGC	1 cut(s)	591
Sau3AI	GATC	5 cut(s)	379, 409, 550, 1076, 1080
ScrFI	CCNGG	1 cut(s)	705
SduI	GDGCHC	1 cut(s)	25
SfaNI	GCATC	3 cut(s)	4, 167, 771
SfcI	CTRYAG	3 cut(s)	422, 450, 667
Sfr274I	CTCGAG	1 cut(s)	803
SfuI	TTCGAA	1 cut(s)	817
SlaI	CTCGAG	1 cut(s)	803
SmlI	CTYRAG	2 cut(s)	413, 803
SmoI	CTYRAG	2 cut(s)	413, 803
Sse9I	AATT	8 cut(s)	66, 434, 486, 735, 780, 881, 928, 1028
SseBI	AGGCCT	1 cut(s)	801
SspI	AATATT	1 cut(s)	473
SspMI	CTAG	4 cut(s)	30, 234, 554, 618
StuI	AGGCCT	1 cut(s)	801
StyD4I	CCNGG	1 cut(s)	703
TaaI	ACNGT	2 cut(s)	671, 941
TaqI	TCGA	3 cut(s)	804, 817, 1079
TasI	AATT	8 cut(s)	66, 434, 486, 735, 780, 881, 928, 1028
TfiI	GAWTC	5 cut(s)	230, 260, 386, 776, 808
Tru1I	TTAA	7 cut(s)	219, 441, 476, 717, 783, 1088, 1096
Tru9I	TTAA	7 cut(s)	219, 441, 476, 717, 783, 1088, 1096
TscAI	CASTG	1 cut(s)	912
TseFI	GTSAC	1 cut(s)	854
TseI	GCWGC	1 cut(s)	590
Tsp45I	GTSAC	1 cut(s)	854
TspDTI	ATGAA	8 cut(s)	150, 203, 309, 427, 596, 643, 921, 947
TspGWI	ACGGA	1 cut(s)	1040
TspRI	CASTG	1 cut(s)	912
Van91I	CCANNNNNTGG	1 cut(s)	173
VspI	ATTAAT	1 cut(s)	441
XapI	RAATTY	5 cut(s)	434, 486, 881, 928, 1028
XbaI	TCTAGA	2 cut(s)	233, 553
XhoI	CTCGAG	1 cut(s)	803
XmnI	GAANNNNTTC	1 cut(s)	972
XspI	CTAG	4 cut(s)	30, 234, 554, 618
Zsp2I	ATGCAT	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.