Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014654

Physical Location & Seq

Genomic Coordinates Reverse (-)

7793389 .. 7796215

Gene Structure 2827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0057700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTCCCGACGAGACAGTCGCGATTCTGATTCCAGACGACACCGTTCCAGGTTCGACAGGGAACCCAGTCCCAAGAGGTATAGGAGGGATGAGCAAGACAACAAAGATAGAGTCTTCGAGAAGAGTAATTTGGAGGGTGCAAAGAAGACTGACCAGGAGGTCCAGGATCAAAAGCAGCGCCGCAGGCTGCAAGATGCATTGCCGCTCGAGTCCCCATTAGGATCCGATGCCAAGGTGGAAAGTGGGGCTCCCAGGAAGGAGTCTGATACGAAACCCAGTGGACATCAAGAGCTAACCAAAAACTCCTCTGATGCAACTGAAGCACCCCGGTCTCGATCTTATTTTCAGAAGCATGATGAGCGTGGTGGTGCCGGGCAAGCTGTTCGAAGCTCTGGTCGTGGTTCAACTTCTGAACATGGACGCCGGAGGGATTCAAAGGATCACCATGATGATAAGACAGTGAGCAAAACAACTAATGATTCACGGCTAAGAAATGAGAAACCTAATGGTGATGAAAACAGGACCTGGCGTCATGATCGTTACTCAGAAATGGAGGCTGATCTACCAACCGCAAGGAAAAGACCCGCTTTCAGGGAGAAGAAAGTTCCACTGGAGTCTGAAAATACTGAAAAAACAGCAGTAGAGACTGCAAAGTCAAGCCATCCTGACCGTTCGATGGAAGGAAGTAGAAAGAAGGAGGAAAGAGGTGACAACCGACGCCACTTTGATAGATCTGAGAAGCAATTTGGAGGAGACAGGGTGCGTTACAAGGGAGAAGCGCAGAGAGGTGCCTTTCCTTCAAGAGAAAGGTACACCAATGGTGGTGCTGGCCGCAACTATAGAGGAAGAGATAGATTTGGTGAGAGGCAGGGGTATCATTCTACTGGTGGTCGTGTTGAGAAATGGGGACATGATTTATATCATGAGGCTAATAGGAGTCCAACACCAAAAAATGAAGAGGATCAAATTGCGAAGGTAGAAGCACTTTTGGCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070011 GO:0070137 GO:0070139 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

332

Amino Acids

38.33

Weight (kDa)

9.81

Isoelectric Point (pI)

63.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11700 FvH4_2g11700
prunus_persica	Prupe.8G069500_v2.0.a1 Prupe.8G069500_v2.0.a1
pyrus_communis	pycom10g04120
rosa_chinensis	RchiOBHm_Chr6g0271021
rosa_laevigata	RLG00000013750 RLG00000013751 RLG00000013752
rosa_roxburghii	Rroxscaffold_7G00197420
rosa_rugosa	Rorug06G0057600 Rorug06G0057700
rosa_samantha	Rh6AG177600 Rh6BG180900 Rh6CG176900 Rh6DG169100
rosa_wichuraiana	Rw6G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	15, 158, 652
AccB1I	GGYRCC	2 cut(s)	368, 788
AccBSI	CCGCTC	1 cut(s)	205
AccII	CGCG	1 cut(s)	21
AciI	CCGC	5 cut(s)	181, 203, 570, 585, 832
AclWI	GGATC	5 cut(s)	174, 216, 229, 447, 969
AcoI	YGGCCR	1 cut(s)	829
AcuI	CTGAAG	1 cut(s)	339
AcyI	GRCGYC	3 cut(s)	421, 529, 718
AfaI	GTAC	1 cut(s)	812
AfiI	CCNNNNNNNGG	2 cut(s)	591, 676
AgsI	TTSAA	3 cut(s)	405, 435, 801
AhdI	GACNNNNNGTC	1 cut(s)	528
AjnI	CCWGG	5 cut(s)	47, 153, 162, 251, 524
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	3 cut(s)	292, 380, 390
AluI	AGCT	3 cut(s)	292, 380, 390
Alw26I	GTCTC	4 cut(s)	6, 336, 638, 747
AlwI	GGATC	5 cut(s)	174, 216, 229, 447, 969
AlwNI	CAGNNNCTG	1 cut(s)	525
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	1 cut(s)	829
ApeKI	GCWGC	2 cut(s)	175, 187
ArsI	GACNNNNNNTTYG	4 cut(s)	96, 128, 379, 411
AspLEI	GCGC	2 cut(s)	180, 781
AspS9I	GGNCC	2 cut(s)	160, 522
AsuC2I	CCSGG	2 cut(s)	328, 373
AsuHPI	GGTGA	4 cut(s)	434, 521, 719, 872
AsuII	TTCGAA	1 cut(s)	385
AvaI	CYCGRG	1 cut(s)	206
AvaII	GGWCC	2 cut(s)	160, 522
BamHI	GGATCC	1 cut(s)	221
BanI	GGYRCC	2 cut(s)	368, 788
BanII	GRGCYC	1 cut(s)	250
BbsI	GAAGAC	2 cut(s)	106, 152
BbvI	GCAGC	2 cut(s)	174, 187
BccI	CCATC	2 cut(s)	669, 670
BceAI	ACGGC	1 cut(s)	500
BcgI	CGANNNNNNTGC	2 cut(s)	365, 399
BciT130I	CCWGG	5 cut(s)	49, 155, 164, 253, 526
BcnI	CCSGG	2 cut(s)	328, 373
BcoDI	GTCTC	4 cut(s)	6, 336, 638, 747
BfmI	CTRYAG	1 cut(s)	838
BfoI	RGCGCY	1 cut(s)	181
BglII	AGATCT	1 cut(s)	731
BisI	GCNGC	5 cut(s)	176, 181, 188, 203, 832
BlsI	GCNGC	5 cut(s)	177, 182, 189, 204, 833
Bme1390I	CCNGG	7 cut(s)	49, 155, 164, 253, 328, 373, 526
Bme18I	GGWCC	2 cut(s)	160, 522
BmeRI	GACNNNNNGTC	1 cut(s)	528
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	160, 522
BmiI	GGNNCC	5 cut(s)	63, 223, 249, 370, 790
BmrFI	CCNGG	7 cut(s)	49, 155, 164, 253, 328, 373, 526
BmrI	ACTGGG	2 cut(s)	60, 270
BmsI	GCATC	3 cut(s)	184, 217, 301
BmuI	ACTGGG	2 cut(s)	60, 270
BpiI	GAAGAC	2 cut(s)	106, 152
BpmI	CTGGAG	1 cut(s)	632
Bpu14I	TTCGAA	1 cut(s)	385
BpuMI	CCSGG	2 cut(s)	328, 373
BsaBI	GATNNNNATC	1 cut(s)	918
BsaHI	GRCGYC	3 cut(s)	421, 529, 718
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	3 cut(s)	231, 251, 326
BsaXI	ACNNNNNCTCC	2 cut(s)	744, 774
Bsc4I	CCNNNNNNNGG	2 cut(s)	591, 676
Bse1I	ACTGG	4 cut(s)	66, 276, 615, 889
Bse3DI	GCAATG	1 cut(s)	197
Bse8I	GATNNNNATC	1 cut(s)	918
BseBI	CCWGG	5 cut(s)	49, 155, 164, 253, 526
BseDI	CCNNGG	3 cut(s)	231, 251, 326
BseGI	GGATG	2 cut(s)	94, 661
BseJI	GATNNNNATC	1 cut(s)	918
BseLI	CCNNNNNNNGG	2 cut(s)	591, 676
BseMI	GCAATG	1 cut(s)	197
BseMII	CTCAG	2 cut(s)	558, 726
BseNI	ACTGG	4 cut(s)	66, 276, 615, 889
BseRI	GAGGAG	2 cut(s)	295, 765
BseXI	GCAGC	2 cut(s)	174, 187
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	831
BshNI	GGYRCC	2 cut(s)	368, 788
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	3 cut(s)	328, 372, 424
BslFI	GGGAC	3 cut(s)	54, 196, 921
BslI	CCNNNNNNNGG	2 cut(s)	591, 676
BsmAI	GTCTC	4 cut(s)	6, 336, 638, 747
BsmFI	GGGAC	3 cut(s)	54, 196, 921
BsnI	GGCC	1 cut(s)	831
Bso31I	GGTCTC	1 cut(s)	336
BsoBI	CYCGRG	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	8 cut(s)	166, 221, 335, 439, 535, 559, 731, 961
Bsp68I	TCGCGA	1 cut(s)	21
BspACI	CCGC	5 cut(s)	181, 203, 570, 585, 832
BspANI	GGCC	1 cut(s)	831
BspCNI	CTCAG	2 cut(s)	557, 727
BspFNI	CGCG	1 cut(s)	21
BspHI	TCATGA	2 cut(s)	532, 922
BspLI	GGNNCC	5 cut(s)	63, 223, 249, 370, 790
BspPI	GGATC	5 cut(s)	174, 216, 229, 447, 969
BspT104I	TTCGAA	1 cut(s)	385
BspT107I	GGYRCC	2 cut(s)	368, 788
BspTNI	GGTCTC	1 cut(s)	336
BsrBI	CCGCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	197
BsrI	ACTGG	4 cut(s)	66, 276, 615, 889
BssECI	CCNNGG	3 cut(s)	231, 251, 326
BssMI	GATC	8 cut(s)	166, 221, 335, 439, 535, 559, 731, 961
BssNI	GRCGYC	3 cut(s)	421, 529, 718
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	5 cut(s)	49, 155, 164, 253, 526
Bst4CI	ACNGT	4 cut(s)	17, 44, 460, 671
Bst6I	CTCTTC	3 cut(s)	116, 841, 951
BstACI	GRCGYC	3 cut(s)	421, 529, 718
BstBI	TTCGAA	1 cut(s)	385
BstC8I	GCNNGC	3 cut(s)	185, 378, 829
BstDEI	CTNAG	3 cut(s)	488, 544, 735
BstF5I	GGATG	2 cut(s)	94, 661
BstFNI	CGCG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	2 cut(s)	180, 781
BstKTI	GATC	8 cut(s)	169, 224, 338, 442, 538, 562, 734, 964
BstMAI	GTCTC	4 cut(s)	6, 336, 638, 747
BstMBI	GATC	8 cut(s)	166, 221, 335, 439, 535, 559, 731, 961
BstMWI	GCNNNNNNNGC	5 cut(s)	184, 320, 358, 377, 989
BstNI	CCWGG	5 cut(s)	49, 155, 164, 253, 526
BstSCI	CCNGG	7 cut(s)	47, 153, 162, 251, 326, 371, 524
BstSFI	CTRYAG	1 cut(s)	838
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	174, 187
BstV2I	GAAGAC	2 cut(s)	106, 152
BstX2I	RGATCY	2 cut(s)	221, 731
BstYI	RGATCY	2 cut(s)	221, 731
BsuRI	GGCC	1 cut(s)	831
BtsCI	GGATG	2 cut(s)	94, 661
BtsIMutI	CAGTG	3 cut(s)	283, 465, 608
BtuMI	TCGCGA	1 cut(s)	21
Cac8I	GCNNGC	3 cut(s)	185, 378, 829
CaiI	CAGNNNCTG	1 cut(s)	525
CciI	TCATGA	2 cut(s)	532, 922
CfoI	GCGC	2 cut(s)	180, 781
Cfr13I	GGNCC	2 cut(s)	160, 522
CseI	GACGC	3 cut(s)	429, 518, 726
Csp6I	GTAC	1 cut(s)	811
CviAII	CATG	6 cut(s)	353, 416, 446, 533, 911, 923
CviQI	GTAC	1 cut(s)	811
DdeI	CTNAG	3 cut(s)	488, 544, 735
DpnI	GATC	8 cut(s)	168, 223, 337, 441, 537, 561, 733, 963
DpnII	GATC	8 cut(s)	166, 221, 335, 439, 535, 559, 731, 961
DrdI	GACNNNNNNGTC	3 cut(s)	15, 158, 652
DriI	GACNNNNNGTC	1 cut(s)	528
DseDI	GACNNNNNNGTC	3 cut(s)	15, 158, 652
EaeI	YGGCCR	1 cut(s)	829
Eam1104I	CTCTTC	3 cut(s)	116, 841, 951
Eam1105I	GACNNNNNGTC	1 cut(s)	528
EarI	CTCTTC	3 cut(s)	116, 841, 951
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	250
Eco31I	GGTCTC	1 cut(s)	336
Eco47I	GGWCC	2 cut(s)	160, 522
Eco57I	CTGAAG	1 cut(s)	339
Eco88I	CYCGRG	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	522
EcoRII	CCWGG	5 cut(s)	47, 153, 162, 251, 524
EcoT14I	CCWWGG	1 cut(s)	231
EcoT22I	ATGCAT	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	6 cut(s)	356, 419, 449, 536, 914, 926
FalI	AAGNNNNNCTT	2 cut(s)	571, 603
FaqI	GGGAC	3 cut(s)	54, 196, 921
FatI	CATG	6 cut(s)	352, 415, 445, 532, 910, 922
FauI	CCCGC	1 cut(s)	592
Fnu4HI	GCNGC	5 cut(s)	176, 181, 188, 203, 832
FokI	GGATG	2 cut(s)	101, 648
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	5 cut(s)	176, 181, 188, 203, 832
GlaI	GCGC	2 cut(s)	179, 780
GluI	GCNGC	5 cut(s)	176, 181, 188, 203, 832
GsuI	CTGGAG	1 cut(s)	632
HaeII	RGCGCY	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	831
HapII	CCGG	3 cut(s)	328, 372, 424
HgaI	GACGC	3 cut(s)	429, 518, 726
HhaI	GCGC	2 cut(s)	180, 781
Hin1I	GRCGYC	3 cut(s)	421, 529, 718
Hin1II	CATG	6 cut(s)	356, 419, 449, 536, 914, 926
Hin6I	GCGC	2 cut(s)	178, 779
HinP1I	GCGC	2 cut(s)	178, 779
HinfI	GANTC	9 cut(s)	23, 29, 111, 209, 260, 431, 479, 614, 937
HpaII	CCGG	3 cut(s)	328, 372, 424
HphI	GGTGA	4 cut(s)	434, 521, 719, 872
Hpy166II	GTNNAC	2 cut(s)	281, 813
Hpy188I	TCNGA	9 cut(s)	28, 226, 265, 310, 348, 412, 547, 619, 736
Hpy8I	GTNNAC	2 cut(s)	281, 813
Hpy99I	CGWCG	2 cut(s)	12, 720
HpyAV	CCTTC	5 cut(s)	250, 674, 688, 807, 967
HpyCH4III	ACNGT	4 cut(s)	17, 44, 460, 671
HpyCH4V	TGCA	5 cut(s)	140, 190, 197, 314, 650
HpyF10VI	GCNNNNNNNGC	5 cut(s)	184, 320, 358, 377, 989
HpyF3I	CTNAG	3 cut(s)	488, 544, 735
Hsp92I	GRCGYC	3 cut(s)	421, 529, 718
Hsp92II	CATG	6 cut(s)	356, 419, 449, 536, 914, 926
HspAI	GCGC	2 cut(s)	178, 779
Kzo9I	GATC	8 cut(s)	166, 221, 335, 439, 535, 559, 731, 961
LmnI	GCTCC	1 cut(s)	253
Lsp1109I	GCAGC	2 cut(s)	174, 187
LweI	GCATC	3 cut(s)	184, 217, 301
MaeIII	GTNAC	3 cut(s)	539, 707, 764
MalI	GATC	8 cut(s)	168, 223, 337, 441, 537, 561, 733, 963
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	8 cut(s)	166, 221, 335, 439, 535, 559, 731, 961
MboII	GAAGA	6 cut(s)	106, 133, 157, 610, 858, 968
MflI	RGATCY	2 cut(s)	221, 731
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	3 cut(s)	127, 743, 966
MlyI	GAGTC	5 cut(s)	120, 218, 269, 623, 946
MmeI	TCCRAC	1 cut(s)	965
Mph1103I	ATGCAT	1 cut(s)	199
MslI	CAYNNNNRTG	1 cut(s)	447
MspI	CCGG	3 cut(s)	328, 372, 424
MspR9I	CCNGG	7 cut(s)	49, 155, 164, 253, 328, 373, 526
MvaI	CCWGG	5 cut(s)	49, 155, 164, 253, 526
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	5 cut(s)	184, 320, 358, 377, 989
NciI	CCSGG	2 cut(s)	328, 373
NdeII	GATC	8 cut(s)	166, 221, 335, 439, 535, 559, 731, 961
NlaIII	CATG	6 cut(s)	356, 419, 449, 536, 914, 926
NlaIV	GGNNCC	5 cut(s)	63, 223, 249, 370, 790
NmuCI	GTSAC	1 cut(s)	707
NruI	TCGCGA	1 cut(s)	21
NsiI	ATGCAT	1 cut(s)	199
NspV	TTCGAA	1 cut(s)	385
PaeR7I	CTCGAG	1 cut(s)	206
PagI	TCATGA	2 cut(s)	532, 922
PfeI	GAWTC	4 cut(s)	23, 29, 431, 479
PfoI	TCCNGGA	1 cut(s)	162
PkrI	GCNGC	5 cut(s)	177, 182, 189, 204, 833
PleI	GAGTC	5 cut(s)	119, 217, 268, 622, 945
PpsI	GAGTC	5 cut(s)	119, 217, 268, 622, 945
PpuMI	RGGWCCY	1 cut(s)	522
Psp5II	RGGWCCY	1 cut(s)	522
Psp6I	CCWGG	5 cut(s)	47, 153, 162, 251, 524
PspGI	CCWGG	5 cut(s)	47, 153, 162, 251, 524
PspN4I	GGNNCC	5 cut(s)	63, 223, 249, 370, 790
PspPI	GGNCC	2 cut(s)	160, 522
PspPPI	RGGWCCY	1 cut(s)	522
PspXI	VCTCGAGB	1 cut(s)	206
PstNI	CAGNNNCTG	1 cut(s)	525
PsuI	RGATCY	2 cut(s)	221, 731
RruI	TCGCGA	1 cut(s)	21
RsaI	GTAC	1 cut(s)	812
RsaNI	GTAC	1 cut(s)	811
RseI	CAYNNNNRTG	1 cut(s)	447
SatI	GCNGC	5 cut(s)	176, 181, 188, 203, 832
Sau3AI	GATC	8 cut(s)	166, 221, 335, 439, 535, 559, 731, 961
Sau96I	GGNCC	2 cut(s)	160, 522
SchI	GAGTC	5 cut(s)	120, 218, 269, 623, 946
ScrFI	CCNGG	7 cut(s)	49, 155, 164, 253, 328, 373, 526
SduI	GDGCHC	1 cut(s)	250
SfaNI	GCATC	3 cut(s)	184, 217, 301
SfcI	CTRYAG	1 cut(s)	838
Sfr274I	CTCGAG	1 cut(s)	206
SfuI	TTCGAA	1 cut(s)	385
SinI	GGWCC	2 cut(s)	160, 522
SlaI	CTCGAG	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	3 cut(s)	127, 743, 966
SsiI	CCGC	5 cut(s)	181, 203, 570, 585, 832
StyD4I	CCNGG	7 cut(s)	47, 153, 162, 251, 326, 371, 524
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	4 cut(s)	17, 44, 460, 671
TaqI	TCGA	6 cut(s)	54, 117, 207, 334, 385, 674
TasI	AATT	3 cut(s)	127, 743, 966
TauI	GCSGC	3 cut(s)	183, 205, 834
TfiI	GAWTC	4 cut(s)	23, 29, 431, 479
TscAI	CASTG	3 cut(s)	283, 465, 615
TseFI	GTSAC	1 cut(s)	707
TseI	GCWGC	2 cut(s)	175, 187
Tsp45I	GTSAC	1 cut(s)	707
TspDTI	ATGAA	3 cut(s)	528, 969, 984
TspRI	CASTG	3 cut(s)	283, 465, 615
VpaK11BI	GGWCC	2 cut(s)	160, 522
XhoI	CTCGAG	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.