Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014654

Physical Location & Seq

Genomic Coordinates Forward (+)

40339025 .. 40346790

Gene Structure 7766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013750

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2256 bp

ATGACTCAGCGCTTCGAGTCTCCAACCAAGCGGTTCTCGGTGTTCGATTTCGACGAAGACGACGTCGTCGAGATTGAGTCCGCCAAGTCGAATGCCAAATTTCGAAAGCCCAGGGCTTCCATTCCTTCCACTTCCAAGAAGAAGAAGAAGAACAAGAACAAGAAGAACAAGAAGAGCCCCATTACCAAGTACACGTTTCTCCAATGCTTTTCTAAAGGAGCAAAGACTCCACTCAAGGAAATTAGCAATGTCACAATAGAGGTCGATGCTTTGGGCTCTTCAAATCATCAAACTAAGCAAGTACATAAAATTCCAGATGATGAGGATAGGCTTCACATGTGCTCTTCGACAACTTTGATATCCAGTCCTTCAAAGAATGAAGCTACGTTAGAAGAACAAGCATCAGAGCCAGGTTCTTGCGGATATGACAATGTTGAAACTGCTTTAAATAATCTTCGTCTTGAATCAAAGAATTCTAGAAGAGCTGGAAAGAGAAACAAAAAATCAGGTTTGAAACAGTTGAGGTGTGCAGTTTATGACCCTCATTGGTCCAAAAGACAGGAAGAAAATAAATCATTAGATAGCAGATATGGTGATACATGGAACTTTAATTTTGATTCTGATAAGCCTTTTGAAGATGTTATCTATCCAAAAGGGGATCCTGATGCAGTTACTATAAGTAAGAGAGATCTTGAACTTCTTGAGCCAGAGACATTCATTAATGACACCATAATTGACTTCTATATTCTATACTTGAAAAGCAACATTCAAACTGAGGAAAAGCATAGGTTTCACTTCTTCAATAGTTTCTTCTTTCGGAAACTTGCTGATCTGGAGAAAGACCCATCAAGTTCCTGTGAACGCAAGGCAGCTTTTCAGCGTGTTCGGAAATGGACTAGGAAAGTGAATCTGTTTGAAAAGGATTACATCTTCATTCCTGTAAACCACAGGCTCCACTGGAGTTTGATTGTCATTTGTCATCCCGGTGAAGTGGCTAATTGTGAAGACGAGGGAATTGAAAGCTCACCCAGGGTGCCATGCATCTTGCATATGGATTCAATTAAAGGAAGCCACAGAGACCTGAAAAATCTTGTTCAAAGATACCTATGTGAAGAGTGGAAAGAGAGGCATGGTGACACAGCAGAAGGTGATTCTTTGAGATTTTTACAATTGAGATTTCTTGAACTGGAGCTACCACAGCAGGAAAATTTATCTGATTGTGGACTCTTTTTGCTTCATTATGTGGAGCGTTTTCTGGCAGAAGCTCCTGTTAACTTTAGCCCTTTTAAGATCACAGAGCTCTCCAACTTTCTAAAGAAAAAGTGGTTCCCTCCTGCTGAGGCTTCTCTTAAACGCCATCAGATTAAGAAGTTGCTATATGATATTCTCGATCAATCTCGGGAAGCTGTTATAGCCGATTGTATTAATTTAGATGAATCCCCTCCAGTACTCAAAAATACAGACAATGAAGAACCTGGCATAAAGCATTTCTACGAAATGTCCAATTCAACACAAAAAATTCATGGGAATTGTTATAGTTCTGATGCACATGGGATCAGAATTACATCGCCAGGAGCTTATTCTTCTCCTAGTCATGTATGCTGCTCTAGAGAAAGGGGACGTGTTGCTGATAAGAATTATCTGCCGTTGACTGCCAATAATATGACGAGTTTTATGTCACCAATACAGGAAGTTGGAGATACTGAGGAAATGACTGATTCGCCGGTTGACTCTGAAGCTTGTCCGAAAGACACTGCATTACCTGCTGATATACGACCCAGGGATACATCTCAGAACCATGGGTTCTCAAAGAACATTGGAGATAATGCTGATGTGAACTCAATTTCTGATACATCTAGTAGTGGATCAGAGATTTGTTCAGTGGTAGGGATAGATGAAGATGACTCACTTGTGGAAGCTGAGGCATTTAACTGTCCAAGGAAAACAGAGAAATCTGAATCGTCTTCAAGTGGGGATCTCACTGCTTGTGTTGTGCAGGATTCTGAAGAGGAAAGTGACAAGCATGGCACTGAGGTTAAATGTATCTCATCCTCTCCAGCAAACCAACAATTCTTCCATCAACAAGCTGCTGACTCTACTGGAAACAATAATCATAAAGAGATTAATATGCTATCGAGTAGTGAGGATCAAGCATCCGAATCAGATGAGCGGCAGACTCCAAAAAGACCGAGGCTCACACATCCTGTAGGTCGAAGAAGGCATACAAGAAGCCTCATGAGAGCGTTGCATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070011 GO:0070137 GO:0070139 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

752

Amino Acids

85.39

Weight (kDa)

6.13

Isoelectric Point (pI)

55.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_ULP	PF25352	141 - 202	2.1e-14	Ubiquitin-like protease PH domain
Peptidase_C48	PF02902	239 - 437	2.2e-33	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11700 FvH4_2g11700
prunus_persica	Prupe.8G069500_v2.0.a1 Prupe.8G069500_v2.0.a1
pyrus_communis	pycom10g04120
rosa_chinensis	RchiOBHm_Chr6g0271021
rosa_laevigata	RLG00000013750 RLG00000013751 RLG00000013752
rosa_roxburghii	Rroxscaffold_7G00197420
rosa_rugosa	Rorug06G0057600 Rorug06G0057700
rosa_samantha	Rh6AG177600 Rh6BG180900 Rh6CG176900 Rh6DG169100
rosa_wichuraiana	Rw6G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AatII	GACGTC	1 cut(s)	66
Acc36I	ACCTGC	1 cut(s)	1771
AccB1I	GGYRCC	1 cut(s)	1033
AccBSI	CCGCTC	1 cut(s)	2170
AciI	CCGC	4 cut(s)	31, 81, 420, 2170
AclWI	GGATC	6 cut(s)	653, 666, 1562, 1873, 1983, 2154
AcsI	RAATTY	5 cut(s)	98, 309, 472, 1207, 1518
AcuI	CTGAAG	2 cut(s)	1755, 2025
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	3 cut(s)	191, 303, 1449
AfeI	AGCGCT	1 cut(s)	11
AflIII	ACRYGT	3 cut(s)	192, 336, 1621
AjiI	CACGTC	1 cut(s)	1622
AjnI	CCWGG	6 cut(s)	110, 409, 1028, 1474, 1570, 1778
Alw21I	GWGCWC	2 cut(s)	344, 1302
Alw26I	GTCTC	3 cut(s)	24, 704, 1071
AlwI	GGATC	6 cut(s)	653, 666, 1562, 1873, 1983, 2154
Ama87I	CYCGRG	1 cut(s)	1398
Aor51HI	AGCGCT	1 cut(s)	11
ApeKI	GCWGC	3 cut(s)	869, 1602, 2087
ApoI	RAATTY	5 cut(s)	98, 309, 472, 1207, 1518
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
AseI	ATTAAT	3 cut(s)	720, 1425, 2124
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	549
AsuC2I	CCSGG	1 cut(s)	984
AsuHPI	GGTGA	6 cut(s)	605, 998, 1017, 1145, 1160, 1671
AsuII	TTCGAA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	1398
AvaII	GGWCC	1 cut(s)	549
BaeI	ACNNNNGTAYC	2 cut(s)	1093, 1126
BamHI	GGATCC	1 cut(s)	658
BanI	GGYRCC	1 cut(s)	1033
BanII	GRGCYC	3 cut(s)	179, 278, 1302
BarI	GAAGNNNNNNTAC	2 cut(s)	2206, 2238
BbsI	GAAGAC	3 cut(s)	63, 1011, 1956
Bbv12I	GWGCWC	2 cut(s)	344, 1302
BbvCI	CCTCAGC	2 cut(s)	1338, 1920
BbvI	GCAGC	3 cut(s)	881, 1589, 2074
BccI	CCATC	3 cut(s)	853, 1365, 2085
BceAI	ACGGC	1 cut(s)	1630
BciT130I	CCWGG	6 cut(s)	112, 411, 1030, 1476, 1572, 1780
BciVI	GTATCC	1 cut(s)	1777
BcnI	CCSGG	1 cut(s)	984
BcoDI	GTCTC	3 cut(s)	24, 704, 1071
BfaI	CTAG	5 cut(s)	477, 897, 1590, 1608, 1857
BfmI	CTRYAG	1 cut(s)	2205
BfoI	RGCGCY	1 cut(s)	13
BfuAI	ACCTGC	1 cut(s)	1771
BfuI	GTATCC	1 cut(s)	1777
BglII	AGATCT	1 cut(s)	688
BisI	GCNGC	4 cut(s)	870, 1603, 2088, 2171
BlsI	GCNGC	4 cut(s)	871, 1604, 2089, 2172
BmcAI	AGTACT	1 cut(s)	1449
Bme1390I	CCNGG	7 cut(s)	112, 411, 984, 1030, 1476, 1572, 1780
Bme18I	GGWCC	1 cut(s)	549
BmeT110I	CYCGRG	1 cut(s)	1398
BmgBI	CACGTC	1 cut(s)	1622
BmgT120I	GGNCC	1 cut(s)	549
BmiI	GGNNCC	4 cut(s)	660, 953, 1035, 1328
BmrFI	CCNGG	7 cut(s)	112, 411, 984, 1030, 1476, 1572, 1780
BmsI	GCATC	6 cut(s)	256, 410, 655, 1050, 1534, 2162
BpiI	GAAGAC	3 cut(s)	63, 1011, 1956
BpmI	CTGGAG	5 cut(s)	854, 979, 1208, 1428, 2040
Bpu10I	CCTNAGC	2 cut(s)	1338, 1920
Bpu14I	TTCGAA	1 cut(s)	103
BpuEI	CTTGAG	2 cut(s)	218, 722
BpuMI	CCSGG	1 cut(s)	984
BsaHI	GRCGYC	1 cut(s)	63
BsaI	GGTCTC	1 cut(s)	1071
BsaJI	CCNNGG	9 cut(s)	110, 111, 1028, 1029, 1778, 1779, 1798, 1937, 2189
Bse118I	RCCGGY	1 cut(s)	1723
Bse1I	ACTGG	5 cut(s)	363, 962, 1191, 1445, 2104
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	6 cut(s)	112, 411, 1030, 1476, 1572, 1780
BseDI	CCNNGG	9 cut(s)	110, 111, 1028, 1029, 1778, 1779, 1798, 1937, 2189
BseGI	GGATG	4 cut(s)	979, 2048, 2153, 2200
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	7 cut(s)	20, 765, 1329, 1695, 1805, 1911, 2022
BseNI	ACTGG	5 cut(s)	363, 962, 1191, 1445, 2104
BseXI	GCAGC	3 cut(s)	881, 1589, 2074
BsgI	GTGCAG	2 cut(s)	549, 2015
BshNI	GGYRCC	1 cut(s)	1033
BsiHKAI	GWGCWC	2 cut(s)	344, 1302
BsiHKCI	CYCGRG	1 cut(s)	1398
BsiSI	CCGG	2 cut(s)	984, 1724
BslFI	GGGAC	1 cut(s)	1632
BsmAI	GTCTC	3 cut(s)	24, 704, 1071
BsmFI	GGGAC	1 cut(s)	1632
BsmI	GAATGC	1 cut(s)	97
Bso31I	GGTCTC	1 cut(s)	1071
BsoBI	CYCGRG	1 cut(s)	1398
Bsp119I	TTCGAA	1 cut(s)	103
Bsp1286I	GDGCHC	4 cut(s)	179, 278, 344, 1302
Bsp143I	GATC	9 cut(s)	658, 688, 829, 1290, 1390, 1554, 1865, 1975, 2146
Bsp19I	CCATGG	1 cut(s)	1798
BspACI	CCGC	4 cut(s)	31, 81, 420, 2170
BspCNI	CTCAG	7 cut(s)	19, 766, 1330, 1696, 1804, 1912, 2023
BspHI	TCATGA	1 cut(s)	2235
BspLI	GGNNCC	4 cut(s)	660, 953, 1035, 1328
BspMI	ACCTGC	1 cut(s)	1771
BspPI	GGATC	6 cut(s)	653, 666, 1562, 1873, 1983, 2154
BspQI	GCTCTTC	4 cut(s)	167, 283, 349, 475
BspT104I	TTCGAA	1 cut(s)	103
BspT107I	GGYRCC	1 cut(s)	1033
BspTNI	GGTCTC	1 cut(s)	1071
BsrBI	CCGCTC	1 cut(s)	2170
BsrDI	GCAATG	1 cut(s)	253
BsrFI	RCCGGY	1 cut(s)	1723
BsrI	ACTGG	5 cut(s)	363, 962, 1191, 1445, 2104
BssAI	RCCGGY	1 cut(s)	1723
BssECI	CCNNGG	9 cut(s)	110, 111, 1028, 1029, 1778, 1779, 1798, 1937, 2189
BssMI	GATC	9 cut(s)	658, 688, 829, 1290, 1390, 1554, 1865, 1975, 2146
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	2 cut(s)	1798, 1937
Bst2UI	CCWGG	6 cut(s)	112, 411, 1030, 1476, 1572, 1780
Bst4CI	ACNGT	2 cut(s)	519, 1934
Bst6I	CTCTTC	6 cut(s)	167, 283, 349, 475, 1107, 2001
BstACI	GRCGYC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	1763
BstBI	TTCGAA	1 cut(s)	103
BstDEI	CTNAG	8 cut(s)	6, 294, 774, 1338, 1704, 1791, 1920, 2031
BstDSI	CCRYGG	1 cut(s)	1798
BstF5I	GGATG	4 cut(s)	979, 2048, 2153, 2200
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	9 cut(s)	661, 691, 832, 1293, 1393, 1557, 1868, 1978, 2149
BstMAI	GTCTC	3 cut(s)	24, 704, 1071
BstMBI	GATC	9 cut(s)	658, 688, 829, 1290, 1390, 1554, 1865, 1975, 2146
BstMWI	GCNNNNNNNGC	3 cut(s)	1198, 1412, 1763
BstNI	CCWGG	6 cut(s)	112, 411, 1030, 1476, 1572, 1780
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	7 cut(s)	110, 409, 982, 1028, 1474, 1570, 1778
BstSFI	CTRYAG	1 cut(s)	2205
BstV1I	GCAGC	3 cut(s)	881, 1589, 2074
BstV2I	GAAGAC	3 cut(s)	63, 1011, 1956
BstX2I	RGATCY	3 cut(s)	658, 688, 1975
BstYI	RGATCY	3 cut(s)	658, 688, 1975
BsuI	GTATCC	1 cut(s)	1777
BtgI	CCRYGG	1 cut(s)	1798
BtgZI	GCGATG	1 cut(s)	1551
BtrI	CACGTC	1 cut(s)	1622
BtsCI	GGATG	4 cut(s)	979, 2048, 2153, 2200
BtsI	GCAGTG	2 cut(s)	1752, 1980
BtsIMutI	CAGTG	5 cut(s)	955, 1752, 1887, 1980, 2028
BveI	ACCTGC	1 cut(s)	1771
CciI	TCATGA	1 cut(s)	2235
CfoI	GCGC	1 cut(s)	12
Cfr10I	RCCGGY	1 cut(s)	1723
Cfr13I	GGNCC	1 cut(s)	549
Csp6I	GTAC	3 cut(s)	190, 302, 1448
CviQI	GTAC	3 cut(s)	190, 302, 1448
DdeI	CTNAG	8 cut(s)	6, 294, 774, 1338, 1704, 1791, 1920, 2031
DpnI	GATC	9 cut(s)	660, 690, 831, 1292, 1392, 1556, 1867, 1977, 2148
DpnII	GATC	9 cut(s)	658, 688, 829, 1290, 1390, 1554, 1865, 1975, 2146
DraI	TTTAAA	1 cut(s)	447
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
Eam1104I	CTCTTC	6 cut(s)	167, 283, 349, 475, 1107, 2001
EarI	CTCTTC	6 cut(s)	167, 283, 349, 475, 1107, 2001
EciI	GGCGGA	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	1300
Eco130I	CCWWGG	2 cut(s)	1798, 1937
Eco24I	GRGCYC	3 cut(s)	179, 278, 1302
Eco31I	GGTCTC	1 cut(s)	1071
Eco32I	GATATC	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	549
Eco47III	AGCGCT	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	1300
Eco57I	CTGAAG	2 cut(s)	1755, 2025
Eco88I	CYCGRG	1 cut(s)	1398
EcoICRI	GAGCTC	1 cut(s)	1300
EcoRI	GAATTC	1 cut(s)	472
EcoRII	CCWGG	6 cut(s)	110, 409, 1028, 1474, 1570, 1778
EcoRV	GATATC	1 cut(s)	360
EcoT14I	CCWWGG	2 cut(s)	1798, 1937
EcoT22I	ATGCAT	1 cut(s)	1043
EcoT38I	GRGCYC	3 cut(s)	179, 278, 1302
ErhI	CCWWGG	2 cut(s)	1798, 1937
FaqI	GGGAC	1 cut(s)	1632
FauNDI	CATATG	1 cut(s)	1050
Fnu4HI	GCNGC	4 cut(s)	870, 1603, 2088, 2171
FokI	GGATG	4 cut(s)	966, 2035, 2140, 2187
FriOI	GRGCYC	3 cut(s)	179, 278, 1302
Fsp4HI	GCNGC	4 cut(s)	870, 1603, 2088, 2171
FspBI	CTAG	5 cut(s)	477, 897, 1590, 1608, 1857
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	4 cut(s)	870, 1603, 2088, 2171
GsuI	CTGGAG	5 cut(s)	854, 979, 1208, 1428, 2040
HaeII	RGCGCY	1 cut(s)	13
HapII	CCGG	2 cut(s)	984, 1724
HhaI	GCGC	1 cut(s)	12
Hin1I	GRCGYC	1 cut(s)	63
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	3 cut(s)	1273, 1650, 1729
HindII	GTYRAC	3 cut(s)	1273, 1650, 1729
HindIII	AAGCTT	1 cut(s)	1737
HpaI	GTTAAC	1 cut(s)	1273
HpaII	CCGG	2 cut(s)	984, 1724
HphI	GGTGA	6 cut(s)	605, 998, 1017, 1145, 1160, 1671
Hpy166II	GTNNAC	8 cut(s)	192, 860, 943, 1223, 1273, 1650, 1729, 1837
Hpy8I	GTNNAC	8 cut(s)	192, 860, 943, 1223, 1273, 1650, 1729, 1837
Hpy99I	CGWCG	4 cut(s)	56, 65, 68, 71
HpyAV	CCTTC	4 cut(s)	135, 378, 1139, 2211
HpyCH4III	ACNGT	2 cut(s)	519, 1934
HpyCH4IV	ACGT	4 cut(s)	63, 194, 386, 1621
HpyCH4V	TGCA	8 cut(s)	530, 668, 1041, 1048, 1547, 1757, 1996, 2248
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1198, 1412, 1763
HpyF3I	CTNAG	8 cut(s)	6, 294, 774, 1338, 1704, 1791, 1920, 2031
HpySE526I	ACGT	4 cut(s)	63, 194, 386, 1621
Hsp92I	GRCGYC	1 cut(s)	63
HspAI	GCGC	1 cut(s)	10
KspAI	GTTAAC	1 cut(s)	1273
Kzo9I	GATC	9 cut(s)	658, 688, 829, 1290, 1390, 1554, 1865, 1975, 2146
LguI	GCTCTTC	4 cut(s)	167, 283, 349, 475
LmnI	GCTCC	6 cut(s)	218, 957, 1189, 1246, 1270, 1574
Lsp1109I	GCAGC	3 cut(s)	881, 1589, 2074
LweI	GCATC	6 cut(s)	256, 410, 655, 1050, 1534, 2162
MaeI	CTAG	5 cut(s)	477, 897, 1590, 1608, 1857
MaeII	ACGT	4 cut(s)	63, 194, 386, 1621
MaeIII	GTNAC	5 cut(s)	250, 670, 1133, 1677, 2015
MalI	GATC	9 cut(s)	660, 690, 831, 1292, 1392, 1556, 1867, 1977, 2148
MbiI	CCGCTC	1 cut(s)	2170
MboI	GATC	9 cut(s)	658, 688, 829, 1290, 1390, 1554, 1865, 1975, 2146
MfeI	CAATTG	1 cut(s)	1169
MflI	RGATCY	3 cut(s)	658, 688, 1975
MhlI	GDGCHC	4 cut(s)	179, 278, 344, 1302
MlyI	GAGTC	8 cut(s)	26, 86, 220, 1218, 1724, 1898, 2087, 2170
MmeI	TCCRAC	3 cut(s)	47, 1329, 1675
Mph1103I	ATGCAT	1 cut(s)	1043
MslI	CAYNNNNRTG	1 cut(s)	984
MspI	CCGG	2 cut(s)	984, 1724
MspR9I	CCNGG	7 cut(s)	112, 411, 984, 1030, 1476, 1572, 1780
MunI	CAATTG	1 cut(s)	1169
Mva1269I	GAATGC	1 cut(s)	97
MvaI	CCWGG	6 cut(s)	112, 411, 1030, 1476, 1572, 1780
MwoI	GCNNNNNNNGC	3 cut(s)	1198, 1412, 1763
NciI	CCSGG	1 cut(s)	984
NcoI	CCATGG	1 cut(s)	1798
NdeI	CATATG	1 cut(s)	1050
NdeII	GATC	9 cut(s)	658, 688, 829, 1290, 1390, 1554, 1865, 1975, 2146
NlaIV	GGNNCC	4 cut(s)	660, 953, 1035, 1328
NmuCI	GTSAC	4 cut(s)	250, 1133, 1677, 2015
NsiI	ATGCAT	1 cut(s)	1043
NspI	RCATGY	1 cut(s)	340
NspV	TTCGAA	1 cut(s)	103
PagI	TCATGA	1 cut(s)	2235
PasI	CCCWGGG	3 cut(s)	111, 1029, 1779
PciI	ACATGT	1 cut(s)	336
PciSI	GCTCTTC	4 cut(s)	167, 283, 349, 475
PcsI	WCGNNNNNNNCGW	4 cut(s)	51, 57, 60, 66
PctI	GAATGC	1 cut(s)	97
PflFI	GACNNNGTC	2 cut(s)	62, 65
PkrI	GCNGC	4 cut(s)	871, 1604, 2089, 2172
PleI	GAGTC	8 cut(s)	25, 85, 220, 1218, 1724, 1898, 2087, 2170
PpsI	GAGTC	8 cut(s)	25, 85, 220, 1218, 1724, 1898, 2087, 2170
PscI	ACATGT	1 cut(s)	336
PshBI	ATTAAT	3 cut(s)	720, 1425, 2124
Psp124BI	GAGCTC	1 cut(s)	1302
Psp6I	CCWGG	6 cut(s)	110, 409, 1028, 1474, 1570, 1778
PspGI	CCWGG	6 cut(s)	110, 409, 1028, 1474, 1570, 1778
PspN4I	GGNNCC	4 cut(s)	660, 953, 1035, 1328
PspPI	GGNCC	1 cut(s)	549
PsrI	GAACNNNNNNTAC	2 cut(s)	1176, 1208
PsuI	RGATCY	3 cut(s)	658, 688, 1975
PsyI	GACNNNGTC	2 cut(s)	62, 65
RsaI	GTAC	3 cut(s)	191, 303, 1449
RsaNI	GTAC	3 cut(s)	190, 302, 1448
RseI	CAYNNNNRTG	1 cut(s)	984
SacI	GAGCTC	1 cut(s)	1302
SapI	GCTCTTC	4 cut(s)	167, 283, 349, 475
SatI	GCNGC	4 cut(s)	870, 1603, 2088, 2171
Sau3AI	GATC	9 cut(s)	658, 688, 829, 1290, 1390, 1554, 1865, 1975, 2146
Sau96I	GGNCC	1 cut(s)	549
ScaI	AGTACT	1 cut(s)	1449
SchI	GAGTC	8 cut(s)	26, 86, 220, 1218, 1724, 1898, 2087, 2170
ScrFI	CCNGG	7 cut(s)	112, 411, 984, 1030, 1476, 1572, 1780
SduI	GDGCHC	4 cut(s)	179, 278, 344, 1302
SfaNI	GCATC	6 cut(s)	256, 410, 655, 1050, 1534, 2162
SfcI	CTRYAG	1 cut(s)	2205
SfuI	TTCGAA	1 cut(s)	103
SinI	GGWCC	1 cut(s)	549
SmiMI	CAYNNNNRTG	1 cut(s)	984
SmlI	CTYRAG	2 cut(s)	233, 701
SmoI	CTYRAG	2 cut(s)	233, 701
SsiI	CCGC	4 cut(s)	31, 81, 420, 2170
SspMI	CTAG	5 cut(s)	477, 897, 1590, 1608, 1857
SstI	GAGCTC	1 cut(s)	1302
StyD4I	CCNGG	7 cut(s)	110, 409, 982, 1028, 1474, 1570, 1778
StyI	CCWWGG	2 cut(s)	1798, 1937
TaaI	ACNGT	2 cut(s)	519, 1934
TaiI	ACGT	4 cut(s)	66, 197, 389, 1624
TaqII	GACCGA	1 cut(s)	2203
TatI	WGTACW	3 cut(s)	189, 301, 1447
TauI	GCSGC	1 cut(s)	2173
TscAI	CASTG	5 cut(s)	962, 1759, 1887, 1987, 2035
TseFI	GTSAC	4 cut(s)	250, 1133, 1677, 2015
TseI	GCWGC	3 cut(s)	869, 1602, 2087
Tsp45I	GTSAC	4 cut(s)	250, 1133, 1677, 2015
TspDTI	ATGAA	8 cut(s)	393, 706, 922, 1226, 1449, 1482, 1511, 1911
TspRI	CASTG	5 cut(s)	962, 1759, 1887, 1987, 2035
Tth111I	GACNNNGTC	2 cut(s)	62, 65
VpaK11BI	GGWCC	1 cut(s)	549
VspI	ATTAAT	3 cut(s)	720, 1425, 2124
XapI	RAATTY	5 cut(s)	98, 309, 472, 1207, 1518
XbaI	TCTAGA	2 cut(s)	476, 1607
XceI	RCATGY	1 cut(s)	340
XspI	CTAG	5 cut(s)	477, 897, 1590, 1608, 1857
ZraI	GACGTC	1 cut(s)	64
ZrmI	AGTACT	1 cut(s)	1449
Zsp2I	ATGCAT	1 cut(s)	1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.