pycom10g04140

COPI associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0012490
Physical Location & Seq
Reverse (-)
4418949 .. 4421675
2727 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 597 bp
ATGTCGACAAACAATGGAGCCGACGTAGAAAGCGGCCTAGGACAGAGAACGTCTCCAGTTTCGAATACAACCACACCGAGAGCGAGACCCGACCCTTTCTTGATCTTCTGCAGATGCTTCAGCGTCCTCACCGCTCTCACCGCCCTTCTCTGCATCGTCGTCAATGTCTTCTCTGCCATTCAATCTTTCAGTGATGGATCTGATGTTTTCGATGGGATATTTCGGTGTTACGCCGTCGTGATTGGAGTGATTGTGGTGGTGGCCGAGACGGAATGGGGATTCGTTATGAAGTTCTGGAAGGTATTGGAGTATTGGGCTGGTAGGGGTATGCTACAAATCTTCCTTGCGGTCATGACAAGGGCTTTTCCTAGCACTTCCAGTACAAAAAGGAATCTAGTTCTTCTAGAGGACATAGCGAGCTATATGCTCCTTGCTTGTGGTGGGATCTATGTTATTTCGGGAATCCTATGCATTGGCTTTCTCAAACGGTCTCGGCAGAAGACAGAAATTTCAAGGGAGCAAGCAGTAAAGGATCTTGAGGACTTGCAGCGGCGAAGGGAAGAACTTGAACACTTGCTTATTGAGGAAAGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPI_assoc

Protein Analysis

199

Amino Acids

22.17

Weight (kDa)

5.94

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33625 AT4G33625 AT4G33625
fragaria_vesca FvH4_2g11740
malus_domestica MD05G1047700.v1.1 MD10G1054500.v1.1
prunus_persica Prupe.8G070100_v2.0.a1
pyrus_communis pycom05g03960 pycom10g04140
rosa_chinensis RchiOBHm_Chr6g0270971
rosa_laevigata RLG00000013757
rosa_multiflora Rmu_sc0010958.1_g000007
rosa_roxburghii Rroxscaffold_7G00197470
rosa_rugosa Rorug06G0057500
rosa_samantha Rh6AG177100 Rh6BG180500 Rh6CG176500 Rh6DG168700
rosa_wichuraiana Rw6G015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 134
AccI GTMKAC 1 cut(s) 5
AciI CCGC 5 cut(s) 33, 132, 141, 347, 550
AclWI GGATC 3 cut(s) 205, 452, 540
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 1 cut(s) 507
AcuI CTGAAG 1 cut(s) 103
AfaI GTAC 1 cut(s) 382
AgsI TTSAA 3 cut(s) 182, 513, 569
AluBI AGCT 1 cut(s) 420
AluI AGCT 1 cut(s) 420
Alw26I GTCTC 4 cut(s) 57, 79, 260, 495
AlwI GGATC 3 cut(s) 205, 452, 540
AoxI GGCC 2 cut(s) 34, 261
ApeKI GCWGC 1 cut(s) 547
ApoI RAATTY 1 cut(s) 507
AspA2I CCTAGG 1 cut(s) 37
AsuHPI GGTGA 2 cut(s) 121, 130
AsuII TTCGAA 1 cut(s) 62
AvrII CCTAGG 1 cut(s) 37
BbsI GAAGAC 2 cut(s) 160, 506
BbvI GCAGC 1 cut(s) 559
BccI CCATC 2 cut(s) 188, 206
BceAI ACGGC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 406, 440
BcoDI GTCTC 4 cut(s) 57, 79, 260, 495
BfaI CTAG 4 cut(s) 38, 369, 395, 404
BfmI CTRYAG 1 cut(s) 109
BisI GCNGC 3 cut(s) 34, 548, 551
BlnI CCTAGG 1 cut(s) 37
BlsI GCNGC 3 cut(s) 35, 549, 552
BmiI GGNNCC 1 cut(s) 19
BmsI GCATC 2 cut(s) 104, 162
BpiI GAAGAC 2 cut(s) 160, 506
BplI GAGNNNNNCTC 2 cut(s) 37, 69
BpmI CTGGAG 1 cut(s) 39
Bpu14I TTCGAA 1 cut(s) 62
BpuEI CTTGAG 1 cut(s) 557
BsaI GGTCTC 2 cut(s) 79, 495
BsaJI CCNNGG 1 cut(s) 37
BsaXI ACNNNNNCTCC 4 cut(s) 9, 39, 237, 267
Bse1I ACTGG 2 cut(s) 56, 378
BseDI CCNNGG 1 cut(s) 37
BseNI ACTGG 2 cut(s) 56, 378
BseXI GCAGC 1 cut(s) 559
BshFI GGCC 2 cut(s) 36, 263
BsmAI GTCTC 4 cut(s) 57, 79, 260, 495
BsmBI CGTCTC 2 cut(s) 57, 260
BsnI GGCC 2 cut(s) 36, 263
Bso31I GGTCTC 2 cut(s) 79, 495
Bsp119I TTCGAA 1 cut(s) 62
Bsp143I GATC 4 cut(s) 102, 197, 444, 532
BspACI CCGC 5 cut(s) 33, 132, 141, 347, 550
BspANI GGCC 2 cut(s) 36, 263
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 19
BspMAI CTGCAG 1 cut(s) 113
BspPI GGATC 3 cut(s) 205, 452, 540
BspT104I TTCGAA 1 cut(s) 62
BspTNI GGTCTC 2 cut(s) 79, 495
BsrBI CCGCTC 1 cut(s) 134
BsrI ACTGG 2 cut(s) 56, 378
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 4 cut(s) 102, 197, 444, 532
BssT1I CCWWGG 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 489
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 418, 522
BstKTI GATC 4 cut(s) 105, 200, 447, 535
BstMAI GTCTC 4 cut(s) 57, 79, 260, 495
BstMBI GATC 4 cut(s) 102, 197, 444, 532
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 559
BstV2I GAAGAC 2 cut(s) 160, 506
BstX2I RGATCY 3 cut(s) 197, 444, 532
BstYI RGATCY 3 cut(s) 197, 444, 532
BsuRI GGCC 2 cut(s) 36, 263
BtsIMutI CAGTG 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 418, 522
CciI TCATGA 1 cut(s) 351
CseI GACGC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 381
CviAII CATG 1 cut(s) 352
CviJI RGCY 7 cut(s) 20, 36, 263, 317, 362, 420, 477
CviKI_1 RGCY 7 cut(s) 20, 36, 263, 317, 362, 420, 477
CviQI GTAC 1 cut(s) 381
DpnI GATC 4 cut(s) 104, 199, 446, 534
DpnII GATC 4 cut(s) 102, 197, 444, 532
EaeI YGGCCR 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 37
Eco31I GGTCTC 2 cut(s) 79, 495
Eco57I CTGAAG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 37
EcoT22I ATGCAT 1 cut(s) 473
ErhI CCWWGG 1 cut(s) 37
Esp3I CGTCTC 2 cut(s) 57, 260
FaeI CATG 1 cut(s) 355
FaiI YATR 8 cut(s) 287, 329, 353, 413, 423, 425, 450, 469
FatI CATG 1 cut(s) 351
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 34, 548, 551
Fsp4HI GCNGC 3 cut(s) 34, 548, 551
FspBI CTAG 4 cut(s) 38, 369, 395, 404
GluI GCNGC 3 cut(s) 34, 548, 551
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 2 cut(s) 36, 263
HgaI GACGC 1 cut(s) 112
Hin1II CATG 1 cut(s) 355
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 279, 391, 462
HphI GGTGA 2 cut(s) 121, 130
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 7 cut(s) 100, 238, 295, 352, 404, 459, 536
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 3 cut(s) 26, 161, 239
HpyAV CCTTC 3 cut(s) 155, 292, 549
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4IV ACGT 2 cut(s) 24, 50
HpyCH4V TGCA 4 cut(s) 111, 153, 471, 547
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpySE526I ACGT 2 cut(s) 24, 50
Hsp92II CATG 1 cut(s) 355
Kzo9I GATC 4 cut(s) 102, 197, 444, 532
LmnI GCTCC 3 cut(s) 17, 432, 517
LpnPI CCDG 4 cut(s) 69, 280, 303, 391
Lsp1109I GCAGC 1 cut(s) 559
LweI GCATC 2 cut(s) 104, 162
MaeI CTAG 4 cut(s) 38, 369, 395, 404
MaeII ACGT 2 cut(s) 24, 50
MaeIII GTNAC 1 cut(s) 227
MalI GATC 4 cut(s) 104, 199, 446, 534
MbiI CCGCTC 1 cut(s) 134
MboI GATC 4 cut(s) 102, 197, 444, 532
MboII GAAGA 6 cut(s) 97, 160, 331, 392, 511, 572
MflI RGATCY 3 cut(s) 197, 444, 532
MluCI AATT 1 cut(s) 507
MnlI CCTC 4 cut(s) 137, 400, 532, 577
Mph1103I ATGCAT 1 cut(s) 473
MseI TTAA 1 cut(s) 595
MspA1I CMGCKG 1 cut(s) 550
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 4 cut(s) 102, 197, 444, 532
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 1 cut(s) 19
NmeAIII GCCGAG 2 cut(s) 289, 472
NsiI ATGCAT 1 cut(s) 473
NspV TTCGAA 1 cut(s) 62
PagI TCATGA 1 cut(s) 351
PfeI GAWTC 3 cut(s) 279, 391, 462
PkrI GCNGC 3 cut(s) 35, 549, 552
PspN4I GGNNCC 1 cut(s) 19
PstI CTGCAG 1 cut(s) 113
PsuI RGATCY 3 cut(s) 197, 444, 532
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 595
SatI GCNGC 3 cut(s) 34, 548, 551
Sau3AI GATC 4 cut(s) 102, 197, 444, 532
SetI ASST 4 cut(s) 27, 53, 303, 422
SfaNI GCATC 2 cut(s) 104, 162
SfcI CTRYAG 1 cut(s) 109
SfuI TTCGAA 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 1 cut(s) 507
SsiI CCGC 5 cut(s) 33, 132, 141, 347, 550
SspMI CTAG 4 cut(s) 38, 369, 395, 404
StyI CCWWGG 1 cut(s) 37
TaaI ACNGT 1 cut(s) 489
TaiI ACGT 2 cut(s) 27, 53
TaqI TCGA 3 cut(s) 5, 62, 210
TasI AATT 1 cut(s) 507
TatI WGTACW 1 cut(s) 380
TauI GCSGC 2 cut(s) 36, 553
TfiI GAWTC 3 cut(s) 279, 391, 462
Tru1I TTAA 1 cut(s) 595
Tru9I TTAA 1 cut(s) 595
TscAI CASTG 1 cut(s) 196
TseI GCWGC 1 cut(s) 547
TspDTI ATGAA 1 cut(s) 302
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 1 cut(s) 196
XapI RAATTY 1 cut(s) 507
XbaI TCTAGA 1 cut(s) 403
XmaJI CCTAGG 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 4 cut(s) 38, 369, 395, 404
Zsp2I ATGCAT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.