pycom10g05350

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0005976
Physical Location & Seq
Reverse (-)
5695700 .. 5699102
3403 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 651 bp
ATGGCCAAACCCAAAGCTCCGAGACGAACGCTGGACTCATACACCGTCAAACCCATCAACAAAACCATCAGAGCCGGTGACTGCGTCCTGATGCGGCCGTCGGAGCCGGGGAAGCCGTCGTACGTGGCGAAGATCGAGCGCATCGAGGCCGACAGCCGCGGCTCCAACGTCAAGGTCCACGTCCAGTGGTACTATCGGCCGGAGGAGTCGCTCGGCGGCCGGAGGCAGTTTCACGGCTCCAAAGAGGTCTTTCTCTCCGATCACCACGATGTTCAGAGCGCCGACACCATCGAGGCCAAGTGTACGGTCCACACCTTCAAGAGCTACACCAAGCTTGACGCTGTTGGAAACGACGATTTCTTCTGTCGTTTTGAGTATAATTCCTCCACTGGGGCTTTCAATCCCGACCGCGTTGCCGTGTATTGCAAATGTGAGATGCCTTACAACCCGGATGACCTCATGGTTCAGTGTGAAGGTTGTAGTGATTGGTTTCATCCTGCTTGTATAGACATGAATATACAGGAAGCCAAAAGACTAGATCACTTTTTCTGTGAAGGCTGCTCTTCCGAGGGTCAAAAGAAATTGCAGAATTCCCATACTGCTTCCAGACACCCTGATACAAAGGTGGATACAAAACGGCGTCGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

217

Amino Acids

24.76

Weight (kDa)

8.48

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 22 - 135 7.5e-25 BAH domain
PHD PF00628 142 - 187 1.7e-08 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 159, 411
AciI CCGC 5 cut(s) 94, 157, 159, 216, 409
AcoI YGGCCR 4 cut(s) 3, 95, 197, 217
AcsI RAATTY 1 cut(s) 589
AcyI GRCGYC 1 cut(s) 640
AfaI GTAC 3 cut(s) 122, 191, 304
AfiI CCNNNNNNNGG 1 cut(s) 390
AgsI TTSAA 2 cut(s) 319, 400
AjiI CACGTC 1 cut(s) 181
AluBI AGCT 3 cut(s) 17, 324, 334
AluI AGCT 3 cut(s) 17, 324, 334
Alw26I GTCTC 1 cut(s) 16
AoxI GGCC 6 cut(s) 3, 95, 147, 197, 217, 294
ApeKI GCWGC 1 cut(s) 558
ApoI RAATTY 1 cut(s) 589
AspLEI GCGC 2 cut(s) 141, 281
AspS9I GGNCC 2 cut(s) 175, 307
AsuC2I CCSGG 2 cut(s) 108, 449
AsuHPI GGTGA 2 cut(s) 89, 254
AvaII GGWCC 2 cut(s) 175, 307
BaeI ACNNNNGTAYC 2 cut(s) 609, 642
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
BbvI GCAGC 1 cut(s) 545
BccI CCATC 3 cut(s) 62, 74, 296
BceAI ACGGC 4 cut(s) 82, 100, 250, 401
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciVI GTATCC 1 cut(s) 622
BcnI CCSGG 2 cut(s) 108, 449
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 1 cut(s) 536
BfoI RGCGCY 1 cut(s) 282
BfuI GTATCC 1 cut(s) 622
BisI GCNGC 5 cut(s) 95, 157, 160, 217, 559
BlsI GCNGC 5 cut(s) 96, 158, 161, 218, 560
Bme1390I CCNGG 2 cut(s) 108, 449
Bme18I GGWCC 2 cut(s) 175, 307
BmgBI CACGTC 1 cut(s) 181
BmgT120I GGNCC 2 cut(s) 175, 307
BmiI GGNNCC 3 cut(s) 105, 163, 238
BmrFI CCNGG 2 cut(s) 108, 449
BmrI ACTGGG 1 cut(s) 399
BmsI GCATC 3 cut(s) 81, 150, 426
BmuI ACTGGG 1 cut(s) 399
BpuMI CCSGG 2 cut(s) 108, 449
BsaAI YACGTR 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 640
BsaJI CCNNGG 3 cut(s) 107, 157, 567
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 2 cut(s) 184, 394
BseDI CCNNGG 3 cut(s) 107, 157, 567
BseGI GGATG 2 cut(s) 457, 493
BseLI CCNNNNNNNGG 1 cut(s) 390
BseNI ACTGG 2 cut(s) 184, 394
BseRI GAGGAG 1 cut(s) 218
BseX3I CGGCCG 3 cut(s) 95, 197, 217
BseXI GCAGC 1 cut(s) 545
Bsh1236I CGCG 2 cut(s) 159, 411
Bsh1285I CGRYCG 4 cut(s) 98, 200, 220, 409
BshFI GGCC 6 cut(s) 5, 97, 149, 199, 219, 296
BsiEI CGRYCG 4 cut(s) 98, 200, 220, 409
BsiSI CCGG 5 cut(s) 75, 107, 200, 220, 449
BsiWI CGTACG 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 390
BsmAI GTCTC 1 cut(s) 16
BsmBI CGTCTC 1 cut(s) 16
BsnI GGCC 6 cut(s) 5, 97, 149, 199, 219, 296
Bsp143I GATC 3 cut(s) 132, 259, 538
BspACI CCGC 5 cut(s) 94, 157, 159, 216, 409
BspANI GGCC 6 cut(s) 5, 97, 149, 199, 219, 296
BspFNI CGCG 2 cut(s) 159, 411
BspLI GGNNCC 3 cut(s) 105, 163, 238
BspQI GCTCTTC 1 cut(s) 568
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 2 cut(s) 184, 394
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 3 cut(s) 107, 157, 567
BssMI GATC 3 cut(s) 132, 259, 538
BssNI GRCGYC 1 cut(s) 640
Bst4CI ACNGT 2 cut(s) 46, 307
Bst6I CTCTTC 1 cut(s) 568
BstACI GRCGYC 1 cut(s) 640
BstBAI YACGTR 1 cut(s) 124
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 2 cut(s) 457, 493
BstFNI CGCG 2 cut(s) 159, 411
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 2 cut(s) 141, 281
BstKTI GATC 3 cut(s) 135, 262, 541
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 3 cut(s) 132, 259, 538
BstMCI CGRYCG 4 cut(s) 98, 200, 220, 409
BstMWI GCNNNNNNNGC 2 cut(s) 103, 112
BstSCI CCNGG 2 cut(s) 106, 447
BstUI CGCG 2 cut(s) 159, 411
BstV1I GCAGC 1 cut(s) 545
BstZI CGGCCG 3 cut(s) 95, 197, 217
BsuI GTATCC 1 cut(s) 622
BsuRI GGCC 6 cut(s) 5, 97, 149, 199, 219, 296
BtgI CCRYGG 1 cut(s) 157
BtrI CACGTC 1 cut(s) 181
BtsCI GGATG 2 cut(s) 457, 493
BtsIMutI CAGTG 3 cut(s) 191, 387, 473
CfoI GCGC 2 cut(s) 141, 281
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 175, 307
Cfr42I CCGCGG 1 cut(s) 160
CseI GACGC 3 cut(s) 73, 347, 629
Csp6I GTAC 3 cut(s) 121, 190, 303
CviAII CATG 2 cut(s) 460, 511
CviQI GTAC 3 cut(s) 121, 190, 303
DpnI GATC 3 cut(s) 134, 261, 540
DpnII GATC 3 cut(s) 132, 259, 538
EaeI YGGCCR 4 cut(s) 3, 95, 197, 217
EagI CGGCCG 3 cut(s) 95, 197, 217
Eam1104I CTCTTC 1 cut(s) 568
EarI CTCTTC 1 cut(s) 568
EclXI CGGCCG 3 cut(s) 95, 197, 217
Eco47I GGWCC 2 cut(s) 175, 307
Eco52I CGGCCG 3 cut(s) 95, 197, 217
EcoRI GAATTC 1 cut(s) 589
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 2 cut(s) 463, 514
FaiI YATR 7 cut(s) 40, 378, 461, 506, 512, 518, 597
FatI CATG 2 cut(s) 459, 510
Fnu4HI GCNGC 5 cut(s) 95, 157, 160, 217, 559
FokI GGATG 2 cut(s) 464, 480
Fsp4HI GCNGC 5 cut(s) 95, 157, 160, 217, 559
FspBI CTAG 1 cut(s) 536
GlaI GCGC 2 cut(s) 140, 280
GluI GCNGC 5 cut(s) 95, 157, 160, 217, 559
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 6 cut(s) 5, 97, 149, 199, 219, 296
HapII CCGG 5 cut(s) 75, 107, 200, 220, 449
HgaI GACGC 3 cut(s) 73, 347, 629
HhaI GCGC 2 cut(s) 141, 281
Hin1I GRCGYC 1 cut(s) 640
Hin1II CATG 2 cut(s) 463, 514
Hin6I GCGC 2 cut(s) 139, 279
HinP1I GCGC 2 cut(s) 139, 279
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 2 cut(s) 35, 206
HpaII CCGG 5 cut(s) 75, 107, 200, 220, 449
HphI GGTGA 2 cut(s) 89, 254
Hpy166II GTNNAC 3 cut(s) 178, 303, 310
Hpy188I TCNGA 7 cut(s) 21, 71, 103, 259, 276, 568, 645
Hpy188III TCNNGA 4 cut(s) 88, 319, 404, 606
Hpy8I GTNNAC 3 cut(s) 178, 303, 310
Hpy99I CGWCG 4 cut(s) 103, 121, 356, 645
HpyAV CCTTC 3 cut(s) 325, 467, 548
HpyCH4III ACNGT 2 cut(s) 46, 307
HpyCH4IV ACGT 3 cut(s) 123, 168, 180
HpyCH4V TGCA 2 cut(s) 426, 586
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 112
HpySE526I ACGT 3 cut(s) 123, 168, 180
Hsp92I GRCGYC 1 cut(s) 640
Hsp92II CATG 2 cut(s) 463, 514
HspAI GCGC 2 cut(s) 139, 279
KspI CCGCGG 1 cut(s) 160
Kzo9I GATC 3 cut(s) 132, 259, 538
LguI GCTCTTC 1 cut(s) 568
LmnI GCTCC 4 cut(s) 22, 103, 167, 242
Lsp1109I GCAGC 1 cut(s) 545
LweI GCATC 3 cut(s) 81, 150, 426
MaeI CTAG 1 cut(s) 536
MaeII ACGT 3 cut(s) 123, 168, 180
MaeIII GTNAC 1 cut(s) 77
MalI GATC 3 cut(s) 134, 261, 540
MboI GATC 3 cut(s) 132, 259, 538
MboII GAAGA 3 cut(s) 142, 352, 555
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 379, 581, 589
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 29, 215
MmeI TCCRAC 4 cut(s) 81, 189, 325, 623
MnlI CCTC 9 cut(s) 139, 196, 216, 238, 286, 394, 467, 562, 639
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 267
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 5 cut(s) 75, 107, 200, 220, 449
MspR9I CCNGG 2 cut(s) 108, 449
MvnI CGCG 2 cut(s) 159, 411
MwoI GCNNNNNNNGC 2 cut(s) 103, 112
NciI CCSGG 2 cut(s) 108, 449
NdeII GATC 3 cut(s) 132, 259, 538
NlaIII CATG 2 cut(s) 463, 514
NlaIV GGNNCC 3 cut(s) 105, 163, 238
NmeAIII GCCGAG 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 568
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 141
Pfl23II CGTACG 1 cut(s) 120
PflFI GACNNNGTC 1 cut(s) 83
PkrI GCNGC 5 cut(s) 96, 158, 161, 218, 560
PleI GAGTC 2 cut(s) 29, 214
PpsI GAGTC 2 cut(s) 29, 214
Ppu21I YACGTR 1 cut(s) 124
PspLI CGTACG 1 cut(s) 120
PspN4I GGNNCC 3 cut(s) 105, 163, 238
PspPI GGNCC 2 cut(s) 175, 307
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 3 cut(s) 122, 191, 304
RsaNI GTAC 3 cut(s) 121, 190, 303
RseI CAYNNNNRTG 1 cut(s) 267
SacII CCGCGG 1 cut(s) 160
SapI GCTCTTC 1 cut(s) 568
SatI GCNGC 5 cut(s) 95, 157, 160, 217, 559
Sau3AI GATC 3 cut(s) 132, 259, 538
Sau96I GGNCC 2 cut(s) 175, 307
SchI GAGTC 2 cut(s) 29, 215
ScrFI CCNGG 2 cut(s) 108, 449
SfaNI GCATC 3 cut(s) 81, 150, 426
Sfr303I CCGCGG 1 cut(s) 160
SgrBI CCGCGG 1 cut(s) 160
SinI GGWCC 2 cut(s) 175, 307
SmiMI CAYNNNNRTG 1 cut(s) 267
Sse9I AATT 3 cut(s) 379, 581, 589
SsiI CCGC 5 cut(s) 94, 157, 159, 216, 409
SspMI CTAG 1 cut(s) 536
StyD4I CCNGG 2 cut(s) 106, 447
TaaI ACNGT 2 cut(s) 46, 307
TaiI ACGT 3 cut(s) 126, 171, 183
TaqI TCGA 3 cut(s) 135, 144, 291
TasI AATT 3 cut(s) 379, 581, 589
TauI GCSGC 4 cut(s) 97, 159, 162, 219
TscAI CASTG 3 cut(s) 191, 394, 473
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 1 cut(s) 558
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 482, 527
TspRI CASTG 3 cut(s) 191, 394, 473
Tth111I GACNNNGTC 1 cut(s) 83
VpaK11BI GGWCC 2 cut(s) 175, 307
XapI RAATTY 1 cut(s) 589
XspI CTAG 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.