Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004703

Physical Location & Seq

Genomic Coordinates Forward (+)

8334908 .. 8336747

Gene Structure 1840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTTAAGGGATTTCAAATTCCTGCGTTCGAATTCCGGGAGGAAAGAAGAGGCCGAGAACGTGCCGGTAAACCCGAAGGACTCATCGGCGATCCGAATTGGCTCGGAGTCGAGAGCTCCGTTTAACCCGATTCAAGATCCGGTCCAGCAACCCAAGCCGGAACAAGAGGTGGGTATTCGGAGCAGGGTTGAAAAGACACCAACAAAGGCTCCCAAGGCCAAAGTTTCCGATCCGGCGTTGCCTCTTCGGACTCCCGATAGGTATGGTTCCCGGAAGCGATTCGGGTGGGCCCAGAAGACCGAACCCATTAGTACGACCGCCGGCGATTTGCACGAGGACGGGGCTAATTATTCGACCCAAGTGAGTAGAGGAGGTGGTGGTGCTGGAAATGGGGGTTTGGGAAGTGTGACTCCTCGGGTGACGAGGACAGCTGGTAGAGCTGCTTCGAGTTATTCGGAGAGTAACTCGACGCAGACAACACCGACCAAGAGTGTTTCTAAGCCTCCGAATTCGGGTTTTCGGAATAAGGCTGATGGAAGTGTTGGTCCTCGAGTGGGGAATTTTGCTTCATTGTATAAAGGGATTCCTATTTCTTGTGGTCCGTCCACGGTGGTTAATTCAGTCGAAGTGCCTCACTTTGATCGATCAAGGAAGATCGATCTTTCTGGATCGATCACAATGTACAGTCAGGTTCTCATTCGTGTGCGTCCTCTCAACAGCATGGAGCGTAGTTTACATGGTTACAACAGGTGTTTGAAGCAAGAAAGTGCTCAAACAATTTCCTGGATTGGGCAACCAGAAAGTCGATTTACATTTGACCATGTAGCCTGTGAAACCGTTGACCAGGAAATGCTTTTCAGGATGGCCGGTCTCCCCATGGTGGAGAATTGCTTGTCGGGATATAATAGCTGCATGTTTGCCTATGGTCAGACAGGAAGTGGAAAAACACATACAATGCTTGGGGAGATTGACGATTTAGAAACCAAGCCCAGTCCACATCGTGGAATGACACCCCGCATTTTTGAGTTTTTATTTGCAAGGATCGAAGCTCCAGGAAGAGGAAATTCGGAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0007049 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

359

Amino Acids

38.99

Weight (kDa)

9.49

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	232 - 349	5.7e-15	Microtubule binding
Kinesin	PF00225	234 - 350	7.2e-26	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19050
fragaria_vesca	FvH4_2g07030 FvH4_2g07030 FvH4_2g07030 FvH4_2g07030 FvH4_2g07030 FvH4_2g07030
malus_domestica	MD00G1050200.v1.1 MD10G1088400.v1.1
prunus_persica	Prupe.8G115500_v2.0.a1
pyrus_communis	pycom05g06710 pycom05g06720 pycom10g07100 pycom10g07120 pycom10g07130
rosa_chinensis	RchiOBHm_Chr6g0259391
rosa_laevigata	RLG00000014535
rosa_multiflora	Rmu_sc0012054.1_g000003 Rmu_sc0023331.1_g000001 Rmu_sc0023332.1_g000001 Rmu_sc0037344.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123360 Rroxscaffold_5G00349410 Rroxscaffold_7G00206650
rosa_rugosa	Rorug05G0588700
rosa_samantha	Rh6AG104100 Rh6AG104200 Rh6BG097400 Rh6CG093500 Rh6DG087300
rosa_wichuraiana	Rw6G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1001
AciI	CCGC	2 cut(s)	318, 1015
AclWI	GGATC	5 cut(s)	85, 131, 224, 676, 1049
AcoI	YGGCCR	1 cut(s)	864
AcsI	RAATTY	5 cut(s)	17, 31, 508, 559, 1063
AdeI	CACNNNGTG	1 cut(s)	1001
AfaI	GTAC	2 cut(s)	313, 683
AfiI	CCNNNNNNNGG	6 cut(s)	512, 554, 789, 880, 1001, 1058
AgsI	TTSAA	4 cut(s)	16, 134, 191, 757
AjnI	CCWGG	3 cut(s)	782, 843, 1051
AluBI	AGCT	5 cut(s)	116, 431, 440, 909, 1049
AluI	AGCT	5 cut(s)	116, 431, 440, 909, 1049
Alw21I	GWGCWC	2 cut(s)	118, 772
Alw26I	GTCTC	1 cut(s)	875
AlwI	GGATC	5 cut(s)	85, 131, 224, 676, 1049
Ama87I	CYCGRG	2 cut(s)	414, 549
AoxI	GGCC	4 cut(s)	51, 216, 288, 864
ApaI	GGGCCC	1 cut(s)	292
ApeKI	GCWGC	2 cut(s)	440, 909
ApoI	RAATTY	5 cut(s)	17, 31, 508, 559, 1063
Asp700I	GAANNNNTTC	1 cut(s)	278
AspS9I	GGNCC	5 cut(s)	142, 288, 289, 545, 599
AsuC2I	CCSGG	2 cut(s)	37, 271
AsuHPI	GGTGA	1 cut(s)	430
AsuII	TTCGAA	1 cut(s)	29
AvaI	CYCGRG	2 cut(s)	414, 549
AvaII	GGWCC	3 cut(s)	142, 545, 599
BaeGI	GKGCMC	1 cut(s)	292
BanII	GRGCYC	2 cut(s)	118, 292
BarI	GAAGNNNNNNTAC	2 cut(s)	427, 459
BauI	CACGAG	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	302
Bbv12I	GWGCWC	2 cut(s)	118, 772
BbvI	GCAGC	2 cut(s)	427, 896
BccI	CCATC	2 cut(s)	527, 856
BciT130I	CCWGG	3 cut(s)	784, 845, 1053
BcnI	CCSGG	2 cut(s)	37, 271
BcoDI	GTCTC	1 cut(s)	875
BisI	GCNGC	2 cut(s)	441, 910
BlsI	GCNGC	2 cut(s)	442, 911
Bme1390I	CCNGG	5 cut(s)	37, 271, 784, 845, 1053
Bme18I	GGWCC	3 cut(s)	142, 545, 599
BmeT110I	CYCGRG	2 cut(s)	414, 549
BmgT120I	GGNCC	5 cut(s)	142, 288, 289, 545, 599
BmiI	GGNNCC	3 cut(s)	210, 268, 290
BmrFI	CCNGG	5 cut(s)	37, 271, 784, 845, 1053
BmrI	ACTGGG	1 cut(s)	984
BmuI	ACTGGG	1 cut(s)	984
BpiI	GAAGAC	1 cut(s)	302
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
BpmI	CTGGAG	1 cut(s)	1035
Bpu14I	TTCGAA	1 cut(s)	29
BpuMI	CCSGG	2 cut(s)	37, 271
Bsa29I	ATCGAT	3 cut(s)	643, 657, 671
BsaI	GGTCTC	1 cut(s)	875
BsaJI	CCNNGG	4 cut(s)	213, 413, 606, 876
BsaWI	WCCGGW	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	6 cut(s)	512, 554, 789, 880, 1001, 1058
Bse118I	RCCGGY	3 cut(s)	64, 320, 866
Bse1I	ACTGG	1 cut(s)	990
BseBI	CCWGG	3 cut(s)	784, 845, 1053
BseCI	ATCGAT	3 cut(s)	643, 657, 671
BseDI	CCNNGG	4 cut(s)	213, 413, 606, 876
BseGI	GGATG	1 cut(s)	867
BseLI	CCNNNNNNNGG	6 cut(s)	512, 554, 789, 880, 1001, 1058
BseNI	ACTGG	1 cut(s)	990
BseRI	GAGGAG	2 cut(s)	384, 402
BseSI	GKGCMC	1 cut(s)	292
BseXI	GCAGC	2 cut(s)	427, 896
Bsh1285I	CGRYCG	1 cut(s)	318
BshFI	GGCC	4 cut(s)	53, 218, 290, 866
BshVI	ATCGAT	3 cut(s)	643, 657, 671
BsiEI	CGRYCG	1 cut(s)	318
BsiHKAI	GWGCWC	2 cut(s)	118, 772
BsiHKCI	CYCGRG	2 cut(s)	414, 549
BsiSI	CCGG	8 cut(s)	36, 65, 140, 158, 233, 271, 321, 867
BslI	CCNNNNNNNGG	6 cut(s)	512, 554, 789, 880, 1001, 1058
BsmAI	GTCTC	1 cut(s)	875
BsnI	GGCC	4 cut(s)	53, 218, 290, 866
Bso31I	GGTCTC	1 cut(s)	875
BsoBI	CYCGRG	2 cut(s)	414, 549
Bsp119I	TTCGAA	1 cut(s)	29
Bsp120I	GGGCCC	1 cut(s)	288
Bsp1286I	GDGCHC	3 cut(s)	118, 292, 772
Bsp1407I	TGTACA	1 cut(s)	681
Bsp19I	CCATGG	1 cut(s)	876
BspACI	CCGC	2 cut(s)	318, 1015
BspANI	GGCC	4 cut(s)	53, 218, 290, 866
BspDI	ATCGAT	3 cut(s)	643, 657, 671
BspLI	GGNNCC	3 cut(s)	210, 268, 290
BspPI	GGATC	5 cut(s)	85, 131, 224, 676, 1049
BspT104I	TTCGAA	1 cut(s)	29
BspTNI	GGTCTC	1 cut(s)	875
BsrFI	RCCGGY	3 cut(s)	64, 320, 866
BsrGI	TGTACA	1 cut(s)	681
BsrI	ACTGG	1 cut(s)	990
BssAI	RCCGGY	3 cut(s)	64, 320, 866
BssECI	CCNNGG	4 cut(s)	213, 413, 606, 876
BssSI	CACGAG	1 cut(s)	332
BssT1I	CCWWGG	2 cut(s)	213, 876
Bst2BI	CACGAG	1 cut(s)	332
Bst2UI	CCWGG	3 cut(s)	784, 845, 1053
Bst4CI	ACNGT	3 cut(s)	610, 686, 838
Bst6I	CTCTTC	3 cut(s)	42, 249, 1051
BstAUI	TGTACA	1 cut(s)	681
BstBI	TTCGAA	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	1 cut(s)	498
BstDSI	CCRYGG	2 cut(s)	606, 876
BstF5I	GGATG	1 cut(s)	867
BstMAI	GTCTC	1 cut(s)	875
BstMCI	CGRYCG	1 cut(s)	318
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 215, 437
BstNI	CCWGG	3 cut(s)	784, 845, 1053
BstNSI	RCATGY	1 cut(s)	916
BstSCI	CCNGG	5 cut(s)	35, 269, 782, 843, 1051
BstSLI	GKGCMC	1 cut(s)	292
BstV1I	GCAGC	2 cut(s)	427, 896
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
Bsu15I	ATCGAT	3 cut(s)	643, 657, 671
BsuRI	GGCC	4 cut(s)	53, 218, 290, 866
BsuTUI	ATCGAT	3 cut(s)	643, 657, 671
BtgI	CCRYGG	2 cut(s)	606, 876
BtsCI	GGATG	1 cut(s)	867
Cac8I	GCNNGC	1 cut(s)	322
Cfr10I	RCCGGY	3 cut(s)	64, 320, 866
Cfr13I	GGNCC	5 cut(s)	142, 288, 289, 545, 599
ClaI	ATCGAT	3 cut(s)	643, 657, 671
CseI	GACGC	2 cut(s)	478, 695
Csp6I	GTAC	2 cut(s)	312, 682
CviAII	CATG	5 cut(s)	721, 737, 821, 877, 913
CviQI	GTAC	2 cut(s)	312, 682
DdeI	CTNAG	1 cut(s)	498
DraIII	CACNNNGTG	1 cut(s)	1001
EaeI	YGGCCR	1 cut(s)	864
Eam1104I	CTCTTC	3 cut(s)	42, 249, 1051
EarI	CTCTTC	3 cut(s)	42, 249, 1051
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	2 cut(s)	213, 876
Eco24I	GRGCYC	2 cut(s)	118, 292
Eco31I	GGTCTC	1 cut(s)	875
Eco47I	GGWCC	3 cut(s)	142, 545, 599
Eco53kI	GAGCTC	1 cut(s)	116
Eco88I	CYCGRG	2 cut(s)	414, 549
EcoICRI	GAGCTC	1 cut(s)	116
EcoRI	GAATTC	2 cut(s)	31, 508
EcoRII	CCWGG	3 cut(s)	782, 843, 1051
EcoT14I	CCWWGG	2 cut(s)	213, 876
EcoT38I	GRGCYC	2 cut(s)	118, 292
ErhI	CCWWGG	2 cut(s)	213, 876
FaeI	CATG	5 cut(s)	724, 740, 824, 880, 916
FatI	CATG	5 cut(s)	720, 736, 820, 876, 912
FauI	CCCGC	1 cut(s)	1022
Fnu4HI	GCNGC	2 cut(s)	441, 910
FokI	GGATG	1 cut(s)	874
FriOI	GRGCYC	2 cut(s)	118, 292
Fsp4HI	GCNGC	2 cut(s)	441, 910
GluI	GCNGC	2 cut(s)	441, 910
GsuI	CTGGAG	1 cut(s)	1035
HaeIII	GGCC	4 cut(s)	53, 218, 290, 866
HapII	CCGG	8 cut(s)	36, 65, 140, 158, 233, 271, 321, 867
HgaI	GACGC	2 cut(s)	478, 695
Hin1II	CATG	5 cut(s)	724, 740, 824, 880, 916
HincII	GTYRAC	1 cut(s)	841
HindII	GTYRAC	1 cut(s)	841
HinfI	GANTC	7 cut(s)	80, 107, 130, 250, 279, 409, 583
HpaII	CCGG	8 cut(s)	36, 65, 140, 158, 233, 271, 321, 867
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	5 cut(s)	70, 606, 734, 841, 995
Hpy188III	TCNNGA	6 cut(s)	111, 134, 254, 666, 859, 897
Hpy8I	GTNNAC	5 cut(s)	70, 606, 734, 841, 995
Hpy99I	CGWCG	1 cut(s)	472
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	3 cut(s)	610, 686, 838
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	3 cut(s)	331, 912, 1037
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 215, 437
HpyF3I	CTNAG	1 cut(s)	498
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	5 cut(s)	724, 740, 824, 880, 916
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
LmnI	GCTCC	5 cut(s)	121, 180, 214, 724, 1054
Lsp1109I	GCAGC	2 cut(s)	427, 896
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	4 cut(s)	406, 418, 461, 740
MboII	GAAGA	5 cut(s)	59, 236, 307, 664, 1068
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	3 cut(s)	118, 292, 772
MlyI	GAGTC	4 cut(s)	74, 116, 244, 403
MreI	CGCCGGCG	1 cut(s)	320
MroNI	GCCGGC	1 cut(s)	320
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	3 cut(s)	5, 123, 615
MslI	CAYNNNNRTG	1 cut(s)	701
MspA1I	CMGCKG	1 cut(s)	431
MspI	CCGG	8 cut(s)	36, 65, 140, 158, 233, 271, 321, 867
MspR9I	CCNGG	5 cut(s)	37, 271, 784, 845, 1053
MvaI	CCWGG	3 cut(s)	784, 845, 1053
MwoI	GCNNNNNNNGC	3 cut(s)	154, 215, 437
NaeI	GCCGGC	1 cut(s)	322
NciI	CCSGG	2 cut(s)	37, 271
NcoI	CCATGG	1 cut(s)	876
NgoMIV	GCCGGC	1 cut(s)	320
NlaIII	CATG	5 cut(s)	724, 740, 824, 880, 916
NlaIV	GGNNCC	3 cut(s)	210, 268, 290
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	2 cut(s)	406, 418
NspI	RCATGY	1 cut(s)	916
NspV	TTCGAA	1 cut(s)	29
PaeR7I	CTCGAG	1 cut(s)	549
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PdiI	GCCGGC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	3 cut(s)	130, 279, 583
PflMI	CCANNNNNTGG	1 cut(s)	1001
PfoI	TCCNGGA	4 cut(s)	35, 269, 782, 1051
PkrI	GCNGC	2 cut(s)	442, 911
PleI	GAGTC	4 cut(s)	74, 115, 244, 403
PpsI	GAGTC	4 cut(s)	74, 115, 244, 403
Psp124BI	GAGCTC	1 cut(s)	118
Psp6I	CCWGG	3 cut(s)	782, 843, 1051
PspGI	CCWGG	3 cut(s)	782, 843, 1051
PspN4I	GGNNCC	3 cut(s)	210, 268, 290
PspOMI	GGGCCC	1 cut(s)	288
PspPI	GGNCC	5 cut(s)	142, 288, 289, 545, 599
PspXI	VCTCGAGB	1 cut(s)	549
PsuI	RGATCY	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	2 cut(s)	313, 683
RsaNI	GTAC	2 cut(s)	312, 682
RseI	CAYNNNNRTG	1 cut(s)	701
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	3 cut(s)	5, 123, 615
SatI	GCNGC	2 cut(s)	441, 910
Sau96I	GGNCC	5 cut(s)	142, 288, 289, 545, 599
SchI	GAGTC	4 cut(s)	74, 116, 244, 403
ScrFI	CCNGG	5 cut(s)	37, 271, 784, 845, 1053
SduI	GDGCHC	3 cut(s)	118, 292, 772
Sfr274I	CTCGAG	1 cut(s)	549
SfuI	TTCGAA	1 cut(s)	29
SgrAI	CRCCGGYG	1 cut(s)	320
SinI	GGWCC	3 cut(s)	142, 545, 599
SlaI	CTCGAG	1 cut(s)	549
SmiMI	CAYNNNNRTG	1 cut(s)	701
SmlI	CTYRAG	1 cut(s)	549
SmoI	CTYRAG	1 cut(s)	549
SsiI	CCGC	2 cut(s)	318, 1015
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	5 cut(s)	35, 269, 782, 843, 1051
StyI	CCWWGG	2 cut(s)	213, 876
TaaI	ACNGT	3 cut(s)	610, 686, 838
TaiI	ACGT	1 cut(s)	63
TaqII	GACCGA	1 cut(s)	314
TatI	WGTACW	1 cut(s)	681
TfiI	GAWTC	3 cut(s)	130, 279, 583
Tru1I	TTAA	3 cut(s)	5, 123, 615
Tru9I	TTAA	3 cut(s)	5, 123, 615
TseFI	GTSAC	2 cut(s)	406, 418
TseI	GCWGC	2 cut(s)	440, 909
Tsp45I	GTSAC	2 cut(s)	406, 418
TspDTI	ATGAA	1 cut(s)	558
TspGWI	ACGGA	2 cut(s)	108, 591
Van91I	CCANNNNNTGG	1 cut(s)	1001
VpaK11BI	GGWCC	3 cut(s)	142, 545, 599
XapI	RAATTY	5 cut(s)	17, 31, 508, 559, 1063
XceI	RCATGY	1 cut(s)	916
XhoI	CTCGAG	1 cut(s)	549
XmnI	GAANNNNTTC	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.