pycom10g08870

Transcriptional regulator of RNA polII, SAGA, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0004824
Physical Location & Seq
Reverse (-)
11686564 .. 11687619
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1056 bp
ATGGTGCTCAATCAGAGCTTTTCTCGTATCGACACTTTGGAGCTGAAAGCTCTAATTGTGCGAAAGATTGGGCATCAGAGAGCTGATAAATACTTTGATCTGATCAGAAGATTGTTTAGTTCAAAGATTAGCAAGTGCGAATTCGACAAGTTTTGCAATCGGATTATTGGGAGGGAAAATGTCTGTCTTCATAACCGGCTTATTAAATCCATCCTCCAGAACGCCTGCCTTGCAAAACCTCCGCCCTTGACCGGTGTTCAGAAAAGGGGACGCACCCTTAATGTTAAAGTAGCAAATGGTTATCAGAAGGGTGGTCTTCACTCGATTAATGCAGATGCAGTTTCTCCATCCCCTCACAGGATCCCGTCTCCAGTTGATCGAGAACGCAAGTTTCAGGACCGCCCAAGTCCTTTGGGGCCAAATGGAAAGTCCCAACATTTTTCAAAAGCACAAGAGCAGCAAAGTGCTACTGAATTGCTTTCTCTTGGAAGCAGGCCGCCTGTTGAAGTTGCCTCCGTAGAAGATGGAGAAGAGGTCGAACAGGATGCAGGAAGCCCAGCTATTCAAAGTAGAAGCCCAGTAACTGCTCCACTCGGTATATATTTGGGTGGATCGCGTAAATCTCTTCCTAATGTATCAGTAAGTGGTGCTTACCACCCTGTGACCTGTCAAAACAGTGGTGAGCTACCTGATACGAGATCCTTAAGAAATCGTTTGGAGCGGAAGTTGGAGAAGGAGGGTATTAATGTCTCTATAGACTGTGTTAACCTCTTGAATAATGGATTGGATGCTTATCTGAAGAGGTTAATGGAACCTTGTATTCGGCTAGCCGGGACAAGGCATGGCAATGATCACTTAAAACAACTAAGTGGTTCATATCCGTACAACGATGGTTCAAATGGGATGTTGCGTGGAAGACATATGCAAAGAGAAACAAAATCTACTTTTGCAACCATGTCAGATTTTTCTGCATCAGTGGAGCTAAATCCCCAAATGCTTGGTGTAGATTGGCCCATACAGCTCGAGAAGATTGTCTTGCGTGCATCTGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAGA-Tad1

Protein Analysis

352

Amino Acids

38.93

Weight (kDa)

9.42

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAGA-Tad1 PF12767 5 - 276 1.7e-60 Transcriptional regulator of RNA polII, SAGA, subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 721
AccII CGCG 1 cut(s) 616
AciI CCGC 4 cut(s) 242, 400, 497, 721
AclWI GGATC 4 cut(s) 355, 368, 619, 693
AcsI RAATTY 1 cut(s) 140
AcuI CTGAAG 1 cut(s) 818
AdeI CACNNNGTG 1 cut(s) 661
AfaI GTAC 1 cut(s) 884
AfiI CCNNNNNNNGG 3 cut(s) 251, 357, 837
AflII CTTAAG 1 cut(s) 703
AgeI ACCGGT 1 cut(s) 251
AgsI TTSAA 6 cut(s) 123, 444, 506, 566, 775, 897
AjuI GAANNNNNNNTTGG 2 cut(s) 767, 799
AluBI AGCT 8 cut(s) 18, 43, 50, 83, 560, 685, 982, 1021
AluI AGCT 8 cut(s) 18, 43, 50, 83, 560, 685, 982, 1021
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 2 cut(s) 372, 754
AlwI GGATC 4 cut(s) 355, 368, 619, 693
AlwNI CAGNNNCTG 1 cut(s) 584
Ama87I CYCGRG 1 cut(s) 1022
AoxI GGCC 3 cut(s) 416, 494, 1010
ApeKI GCWGC 1 cut(s) 457
ApoI RAATTY 1 cut(s) 140
ArsI GACNNNNNNTTYG 2 cut(s) 413, 445
AseI ATTAAT 2 cut(s) 327, 744
AsiGI ACCGGT 1 cut(s) 251
AspS9I GGNCC 3 cut(s) 397, 416, 1011
AsuC2I CCSGG 1 cut(s) 832
AsuHPI GGTGA 1 cut(s) 692
AsuNHI GCTAGC 1 cut(s) 826
AvaI CYCGRG 1 cut(s) 1022
AvaII GGWCC 1 cut(s) 397
BamHI GGATCC 1 cut(s) 360
BbsI GAAGAC 3 cut(s) 179, 308, 922
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 469
BccI CCATC 4 cut(s) 218, 355, 518, 884
BcgI CGANNNNNNTGC 2 cut(s) 527, 561
BclI TGATCA 2 cut(s) 102, 850
BcnI CCSGG 1 cut(s) 832
BcoDI GTCTC 2 cut(s) 372, 754
BfaI CTAG 1 cut(s) 827
BfmI CTRYAG 1 cut(s) 753
BfrI CTTAAG 1 cut(s) 703
BisI GCNGC 2 cut(s) 458, 497
BlsI GCNGC 2 cut(s) 459, 498
Bme1390I CCNGG 1 cut(s) 832
Bme18I GGWCC 1 cut(s) 397
BmeT110I CYCGRG 1 cut(s) 1022
BmgT120I GGNCC 3 cut(s) 397, 416, 1011
BmiI GGNNCC 3 cut(s) 362, 417, 813
BmrFI CCNGG 1 cut(s) 832
BmrI ACTGGG 1 cut(s) 572
BmsI GCATC 6 cut(s) 82, 325, 535, 778, 980, 1052
BmtI GCTAGC 1 cut(s) 830
BmuI ACTGGG 1 cut(s) 572
BpiI GAAGAC 3 cut(s) 179, 308, 922
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BpmI CTGGAG 2 cut(s) 200, 354
BpuMI CCSGG 1 cut(s) 832
BsaBI GATNNNNATC 1 cut(s) 792
BsaWI WCCGGW 1 cut(s) 251
BsaXI ACNNNNNCTCC 4 cut(s) 519, 549, 710, 740
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 357, 837
Bse118I RCCGGY 2 cut(s) 195, 251
Bse1I ACTGG 2 cut(s) 371, 578
Bse3DI GCAATG 1 cut(s) 853
Bse8I GATNNNNATC 1 cut(s) 792
BseGI GGATG 5 cut(s) 210, 347, 550, 793, 909
BseJI GATNNNNATC 1 cut(s) 792
BseLI CCNNNNNNNGG 3 cut(s) 251, 357, 837
BseMI GCAATG 1 cut(s) 853
BseNI ACTGG 2 cut(s) 371, 578
BseXI GCAGC 1 cut(s) 469
BseYI CCCAGC 1 cut(s) 556
Bsh1236I CGCG 1 cut(s) 616
BshFI GGCC 3 cut(s) 418, 496, 1012
BshTI ACCGGT 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 1022
BsiSI CCGG 3 cut(s) 196, 252, 831
BslFI GGGAC 3 cut(s) 282, 415, 847
BslI CCNNNNNNNGG 3 cut(s) 251, 357, 837
BsmAI GTCTC 2 cut(s) 372, 754
BsmBI CGTCTC 1 cut(s) 372
BsmFI GGGAC 3 cut(s) 282, 415, 847
BsnI GGCC 3 cut(s) 418, 496, 1012
BsoBI CYCGRG 1 cut(s) 1022
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 7 cut(s) 97, 102, 360, 376, 611, 698, 850
BspACI CCGC 4 cut(s) 242, 400, 497, 721
BspANI GGCC 3 cut(s) 418, 496, 1012
BspFNI CGCG 1 cut(s) 616
BspLI GGNNCC 3 cut(s) 362, 417, 813
BspOI GCTAGC 1 cut(s) 830
BspPI GGATC 4 cut(s) 355, 368, 619, 693
BspTI CTTAAG 1 cut(s) 703
BsrBI CCGCTC 1 cut(s) 721
BsrDI GCAATG 1 cut(s) 853
BsrFI RCCGGY 2 cut(s) 195, 251
BsrI ACTGG 2 cut(s) 371, 578
BssAI RCCGGY 2 cut(s) 195, 251
BssMI GATC 7 cut(s) 97, 102, 360, 376, 611, 698, 850
Bst4CI ACNGT 2 cut(s) 677, 761
Bst6I CTCTTC 4 cut(s) 525, 630, 794, 1044
BstAFI CTTAAG 1 cut(s) 703
BstC8I GCNNGC 4 cut(s) 226, 494, 828, 1041
BstDEI CTNAG 1 cut(s) 866
BstF5I GGATG 5 cut(s) 210, 347, 550, 793, 909
BstFNI CGCG 1 cut(s) 616
BstKTI GATC 7 cut(s) 100, 105, 363, 379, 614, 701, 853
BstMAI GTCTC 2 cut(s) 372, 754
BstMBI GATC 7 cut(s) 97, 102, 360, 376, 611, 698, 850
BstMWI GCNNNNNNNGC 2 cut(s) 230, 1018
BstSCI CCNGG 1 cut(s) 830
BstSFI CTRYAG 1 cut(s) 753
BstUI CGCG 1 cut(s) 616
BstV1I GCAGC 1 cut(s) 469
BstV2I GAAGAC 3 cut(s) 179, 308, 922
BstX2I RGATCY 2 cut(s) 360, 698
BstXI CCANNNNNNTGG 1 cut(s) 998
BstYI RGATCY 2 cut(s) 360, 698
BsuRI GGCC 3 cut(s) 418, 496, 1012
BtsCI GGATG 5 cut(s) 210, 347, 550, 793, 909
BtsIMutI CAGTG 2 cut(s) 682, 981
Cac8I GCNNGC 4 cut(s) 226, 494, 828, 1041
CaiI CAGNNNCTG 1 cut(s) 584
Cfr10I RCCGGY 2 cut(s) 195, 251
Cfr13I GGNCC 3 cut(s) 397, 416, 1011
CseI GACGC 1 cut(s) 279
Csp6I GTAC 1 cut(s) 883
CspAI ACCGGT 1 cut(s) 251
CviAII CATG 2 cut(s) 842, 955
CviQI GTAC 1 cut(s) 883
DdeI CTNAG 1 cut(s) 866
DpnI GATC 7 cut(s) 99, 104, 362, 378, 613, 700, 852
DpnII GATC 7 cut(s) 97, 102, 360, 376, 611, 698, 850
DraIII CACNNNGTG 1 cut(s) 661
Eam1104I CTCTTC 4 cut(s) 525, 630, 794, 1044
EarI CTCTTC 4 cut(s) 525, 630, 794, 1044
EciI GGCGGA 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 818
Eco88I CYCGRG 1 cut(s) 1022
EcoRI GAATTC 1 cut(s) 140
Esp3I CGTCTC 1 cut(s) 372
FaeI CATG 2 cut(s) 845, 958
FalI AAGNNNNNCTT 4 cut(s) 634, 666, 1019, 1051
FaqI GGGAC 3 cut(s) 282, 415, 847
FatI CATG 2 cut(s) 841, 954
FauNDI CATATG 1 cut(s) 921
FbaI TGATCA 2 cut(s) 102, 850
Fnu4HI GCNGC 2 cut(s) 458, 497
FokI GGATG 5 cut(s) 197, 334, 557, 800, 916
Fsp4HI GCNGC 2 cut(s) 458, 497
FspBI CTAG 1 cut(s) 827
GluI GCNGC 2 cut(s) 458, 497
GsaI CCCAGC 1 cut(s) 560
GsuI CTGGAG 2 cut(s) 200, 354
HaeIII GGCC 3 cut(s) 418, 496, 1012
HapII CCGG 3 cut(s) 196, 252, 831
HgaI GACGC 1 cut(s) 279
Hin1II CATG 2 cut(s) 845, 958
HincII GTYRAC 1 cut(s) 766
HindII GTYRAC 1 cut(s) 766
HpaI GTTAAC 1 cut(s) 766
HpaII CCGG 3 cut(s) 196, 252, 831
HphI GGTGA 1 cut(s) 692
Hpy166II GTNNAC 1 cut(s) 766
Hpy188III TCNNGA 5 cut(s) 217, 380, 395, 772, 1024
Hpy8I GTNNAC 1 cut(s) 766
HpyAV CCTTC 2 cut(s) 301, 727
HpyCH4III ACNGT 2 cut(s) 677, 761
HpyCH4V TGCA 9 cut(s) 156, 233, 332, 338, 548, 925, 950, 971, 1043
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 1018
HpyF3I CTNAG 1 cut(s) 866
Hsp92II CATG 2 cut(s) 845, 958
Ksp22I TGATCA 2 cut(s) 102, 850
KspAI GTTAAC 1 cut(s) 766
Kzo9I GATC 7 cut(s) 97, 102, 360, 376, 611, 698, 850
LmnI GCTCC 4 cut(s) 40, 592, 718, 979
Lsp1109I GCAGC 1 cut(s) 469
LweI GCATC 6 cut(s) 82, 325, 535, 778, 980, 1052
MaeI CTAG 1 cut(s) 827
MaeIII GTNAC 2 cut(s) 580, 661
MalI GATC 7 cut(s) 99, 104, 362, 378, 613, 700, 852
MbiI CCGCTC 1 cut(s) 721
MboI GATC 7 cut(s) 97, 102, 360, 376, 611, 698, 850
MboII GAAGA 9 cut(s) 120, 179, 308, 533, 542, 617, 811, 927, 1039
MflI RGATCY 2 cut(s) 360, 698
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 3 cut(s) 54, 140, 473
MmeI TCCRAC 1 cut(s) 708
MnlI CCTC 9 cut(s) 165, 224, 249, 363, 523, 526, 730, 779, 795
MseI TTAA 9 cut(s) 204, 279, 285, 327, 704, 744, 765, 806, 857
MslI CAYNNNNRTG 1 cut(s) 846
MspCI CTTAAG 1 cut(s) 703
MspI CCGG 3 cut(s) 196, 252, 831
MspR9I CCNGG 1 cut(s) 832
MvnI CGCG 1 cut(s) 616
MwoI GCNNNNNNNGC 2 cut(s) 230, 1018
NciI CCSGG 1 cut(s) 832
NdeI CATATG 1 cut(s) 921
NdeII GATC 7 cut(s) 97, 102, 360, 376, 611, 698, 850
NheI GCTAGC 1 cut(s) 826
NlaIII CATG 2 cut(s) 845, 958
NlaIV GGNNCC 3 cut(s) 362, 417, 813
NmuCI GTSAC 1 cut(s) 661
PaeR7I CTCGAG 1 cut(s) 1022
PinAI ACCGGT 1 cut(s) 251
PkrI GCNGC 2 cut(s) 459, 498
PshBI ATTAAT 2 cut(s) 327, 744
PspFI CCCAGC 1 cut(s) 556
PspN4I GGNNCC 3 cut(s) 362, 417, 813
PspPI GGNCC 3 cut(s) 397, 416, 1011
PstNI CAGNNNCTG 1 cut(s) 584
PsuI RGATCY 2 cut(s) 360, 698
RsaI GTAC 1 cut(s) 884
RsaNI GTAC 1 cut(s) 883
RseI CAYNNNNRTG 1 cut(s) 846
SaqAI TTAA 9 cut(s) 204, 279, 285, 327, 704, 744, 765, 806, 857
SatI GCNGC 2 cut(s) 458, 497
Sau3AI GATC 7 cut(s) 97, 102, 360, 376, 611, 698, 850
Sau96I GGNCC 3 cut(s) 397, 416, 1011
ScrFI CCNGG 1 cut(s) 832
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 6 cut(s) 82, 325, 535, 778, 980, 1052
SfcI CTRYAG 1 cut(s) 753
Sfr274I CTCGAG 1 cut(s) 1022
SinI GGWCC 1 cut(s) 397
SlaI CTCGAG 1 cut(s) 1022
SmiMI CAYNNNNRTG 1 cut(s) 846
SmlI CTYRAG 2 cut(s) 703, 1022
SmoI CTYRAG 2 cut(s) 703, 1022
Sse9I AATT 3 cut(s) 54, 140, 473
SsiI CCGC 4 cut(s) 242, 400, 497, 721
SspMI CTAG 1 cut(s) 827
StyD4I CCNGG 1 cut(s) 830
TaaI ACNGT 2 cut(s) 677, 761
TaqI TCGA 6 cut(s) 30, 144, 323, 379, 537, 1023
TasI AATT 3 cut(s) 54, 140, 473
TauI GCSGC 1 cut(s) 499
Tru1I TTAA 9 cut(s) 204, 279, 285, 327, 704, 744, 765, 806, 857
Tru9I TTAA 9 cut(s) 204, 279, 285, 327, 704, 744, 765, 806, 857
TscAI CASTG 2 cut(s) 682, 981
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 1 cut(s) 457
Tsp45I GTSAC 1 cut(s) 661
TspDTI ATGAA 2 cut(s) 179, 864
TspGWI ACGGA 2 cut(s) 505, 870
TspRI CASTG 2 cut(s) 682, 981
Vha464I CTTAAG 1 cut(s) 703
VpaK11BI GGWCC 1 cut(s) 397
VspI ATTAAT 2 cut(s) 327, 744
XapI RAATTY 1 cut(s) 140
XhoI CTCGAG 1 cut(s) 1022
XspI CTAG 1 cut(s) 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.