Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0017236

Physical Location & Seq

Genomic Coordinates Reverse (-)

11844507 .. 11845525

Gene Structure 1019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAAAAGATCTCCGTCTTTCTGTATCTCGACAACCATATCGATCACATATTTTCCGCGTTTTCGCGCACGAGAAATTACGATAAAAATGGCCTTAGAGGCTTTGAAATCCGCGAGTACCACCACTACTCCTTCTCCATCCTTTTCATCGTTTGAAAAGGTGGAGGATCGTCGCCACGGCAATCACCAAATCCACTCCAAAGAGCCATGGGCCAAACGGAAGGGCTCTAAGCGGCCGCGCAGCGAAGACCCGCCAACCGAAGAGGAGTACCTCGCTCTCTGCCTCATCATGCTCGCCCGCGGCACCACTGATAGCTCTGAATTGCCGCCGCAGCCGCCGTCCCGAGACCTTTCTTACAAGTGCTCTGTTTGCAACAAGGGGTTCTCCTCTTACCAAGCTCTTGGCGGACACAAGGCCAGCCACCGCAAGTCCGACTCTTCCGCCGCCGCCGCTTCCGCCGTGACAACAACAAGCGGTAGGACCCACGAGTGCTCTATCTGCCACAAGACCTTCCCCACCGGCCAGGCACTGGGAGGCCACAAGCGCTGTCACTACGACGGCGGCAGCGCGGCCACGAGCGCTGTCACTACTTCCGAAGGCGGCGGTGCGGGGGCTTCCAGCCATAGTCAAAGTCATCAGAGTCAGCGCGGATTTGACCTAAACATGCCGGCGTTGCCGGAGTTCTGGCCAGGGTTCGGCGGGGACAAGAAAAGTCAACTCTCCGGAGAGCAGGAGGTGCAGAGCCCGATGGTGGGAAAGAAGCCGCGGTGGTTGTTGGGTGGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

263

Amino Acids

28.29

Weight (kDa)

9.34

Isoelectric Point (pI)

74.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	119 - 144	3e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	162 - 186	4.2e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04120
malus_domestica	MD05G1098300.v1.1 MD10G1104100.v1.1
prunus_persica	Prupe.8G142400_v2.0.a1
pyrus_communis	pycom05g09620 pycom10g08950
rosa_chinensis	RchiOBHm_Chr6g0253491
rosa_laevigata	RLG00000015015
rosa_multiflora	Rmu_ssc0000079.1_g000007
rosa_rugosa	Rorug05G0544700
rosa_samantha	Rh6AG059700 Rh6BG053700 Rh6CG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	529
AccII	CGCG	8 cut(s)	58, 66, 113, 238, 300, 569, 648, 766
AccIII	TCCGGA	1 cut(s)	722
AclWI	GGATC	1 cut(s)	174
AcoI	YGGCCR	4 cut(s)	233, 520, 570, 686
AfaI	GTAC	2 cut(s)	118, 269
AfeI	AGCGCT	2 cut(s)	545, 580
AfiI	CCNNNNNNNGG	4 cut(s)	529, 695, 751, 752
AgsI	TTSAA	2 cut(s)	106, 155
AjnI	CCWGG	2 cut(s)	522, 688
AluBI	AGCT	2 cut(s)	315, 398
AluI	AGCT	2 cut(s)	315, 398
Alw21I	GWGCWC	2 cut(s)	365, 494
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	174
AlwNI	CAGNNNCTG	1 cut(s)	529
Ama87I	CYCGRG	1 cut(s)	342
Aor13HI	TCCGGA	1 cut(s)	722
Aor51HI	AGCGCT	2 cut(s)	545, 580
AoxI	GGCC	8 cut(s)	90, 210, 233, 414, 520, 535, 570, 686
ApeKI	GCWGC	3 cut(s)	240, 331, 564
AspLEI	GCGC	6 cut(s)	68, 240, 546, 569, 581, 648
AspS9I	GGNCC	2 cut(s)	210, 480
AsuHPI	GGTGA	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	480
BalI	TGGCCA	1 cut(s)	688
BanI	GGYRCC	1 cut(s)	302
BanII	GRGCYC	2 cut(s)	227, 746
BauI	CACGAG	3 cut(s)	69, 485, 574
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	2 cut(s)	365, 494
BbvI	GCAGC	3 cut(s)	252, 343, 576
BccI	CCATC	2 cut(s)	145, 742
BceAI	ACGGC	4 cut(s)	193, 322, 443, 574
BciT130I	CCWGG	2 cut(s)	524, 690
BcoDI	GTCTC	1 cut(s)	339
BfoI	RGCGCY	2 cut(s)	547, 582
BglI	GCCNNNNNGGC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	8
Bme1390I	CCNGG	2 cut(s)	524, 690
Bme18I	GGWCC	1 cut(s)	480
BmeT110I	CYCGRG	1 cut(s)	342
BmgT120I	GGNCC	2 cut(s)	210, 480
BmiI	GGNNCC	2 cut(s)	304, 482
BmrFI	CCNGG	2 cut(s)	524, 690
BmrI	ACTGGG	1 cut(s)	539
BmuI	ACTGGG	1 cut(s)	539
BpiI	GAAGAC	1 cut(s)	252
Bsa29I	ATCGAT	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	339
BsaJI	CCNNGG	5 cut(s)	175, 206, 298, 689, 764
BsaWI	WCCGGW	1 cut(s)	722
BsaXI	ACNNNNNCTCC	4 cut(s)	112, 118, 142, 148
Bsc4I	CCNNNNNNNGG	4 cut(s)	529, 695, 751, 752
Bse118I	RCCGGY	2 cut(s)	518, 667
Bse1I	ACTGG	1 cut(s)	534
BseAI	TCCGGA	1 cut(s)	722
BseBI	CCWGG	2 cut(s)	524, 690
BseCI	ATCGAT	1 cut(s)	41
BseDI	CCNNGG	5 cut(s)	175, 206, 298, 689, 764
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	4 cut(s)	529, 695, 751, 752
BseNI	ACTGG	1 cut(s)	534
BseRI	GAGGAG	2 cut(s)	278, 376
BseX3I	CGGCCG	1 cut(s)	233
BseXI	GCAGC	3 cut(s)	252, 343, 576
BsgI	GTGCAG	1 cut(s)	758
Bsh1236I	CGCG	8 cut(s)	58, 66, 113, 238, 300, 569, 648, 766
Bsh1285I	CGRYCG	1 cut(s)	236
BshFI	GGCC	8 cut(s)	92, 212, 235, 416, 522, 537, 572, 688
BshNI	GGYRCC	1 cut(s)	302
BshVI	ATCGAT	1 cut(s)	41
BsiEI	CGRYCG	1 cut(s)	236
BsiHKAI	GWGCWC	2 cut(s)	365, 494
BsiHKCI	CYCGRG	1 cut(s)	342
BsiSI	CCGG	4 cut(s)	519, 668, 677, 723
BslFI	GGGAC	2 cut(s)	325, 716
BslI	CCNNNNNNNGG	4 cut(s)	529, 695, 751, 752
BsmAI	GTCTC	1 cut(s)	339
BsmFI	GGGAC	2 cut(s)	325, 716
BsnI	GGCC	8 cut(s)	92, 212, 235, 416, 522, 537, 572, 688
Bso31I	GGTCTC	1 cut(s)	339
BsoBI	CYCGRG	1 cut(s)	342
Bsp1286I	GDGCHC	4 cut(s)	227, 365, 494, 746
Bsp13I	TCCGGA	1 cut(s)	722
Bsp143I	GATC	3 cut(s)	8, 42, 166
Bsp19I	CCATGG	1 cut(s)	206
BspANI	GGCC	8 cut(s)	92, 212, 235, 416, 522, 537, 572, 688
BspDI	ATCGAT	1 cut(s)	41
BspEI	TCCGGA	1 cut(s)	722
BspFNI	CGCG	8 cut(s)	58, 66, 113, 238, 300, 569, 648, 766
BspLI	GGNNCC	2 cut(s)	304, 482
BspPI	GGATC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	339
BsrFI	RCCGGY	2 cut(s)	518, 667
BsrI	ACTGG	1 cut(s)	534
BssAI	RCCGGY	2 cut(s)	518, 667
BssECI	CCNNGG	5 cut(s)	175, 206, 298, 689, 764
BssMI	GATC	3 cut(s)	8, 42, 166
BssSI	CACGAG	3 cut(s)	69, 485, 574
BssT1I	CCWWGG	1 cut(s)	206
Bst2BI	CACGAG	3 cut(s)	69, 485, 574
Bst2UI	CCWGG	2 cut(s)	524, 690
Bst6I	CTCTTC	2 cut(s)	255, 442
BstAPI	GCANNNNNTGC	1 cut(s)	736
BstC8I	GCNNGC	4 cut(s)	294, 298, 418, 669
BstDEI	CTNAG	2 cut(s)	94, 228
BstDSI	CCRYGG	4 cut(s)	175, 206, 298, 764
BstF5I	GGATG	1 cut(s)	137
BstFNI	CGCG	8 cut(s)	58, 66, 113, 238, 300, 569, 648, 766
BstH2I	RGCGCY	2 cut(s)	547, 582
BstHHI	GCGC	6 cut(s)	68, 240, 546, 569, 581, 648
BstKTI	GATC	3 cut(s)	11, 45, 169
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	3 cut(s)	8, 42, 166
BstMCI	CGRYCG	1 cut(s)	236
BstNI	CCWGG	2 cut(s)	524, 690
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	2 cut(s)	522, 688
BstUI	CGCG	8 cut(s)	58, 66, 113, 238, 300, 569, 648, 766
BstV1I	GCAGC	3 cut(s)	252, 343, 576
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	8
BstXI	CCANNNNNNTGG	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	8
BstZI	CGGCCG	1 cut(s)	233
Bsu15I	ATCGAT	1 cut(s)	41
BsuRI	GGCC	8 cut(s)	92, 212, 235, 416, 522, 537, 572, 688
BsuTUI	ATCGAT	1 cut(s)	41
BtgI	CCRYGG	4 cut(s)	175, 206, 298, 764
BtsCI	GGATG	1 cut(s)	137
BtsIMutI	CAGTG	2 cut(s)	306, 527
Cac8I	GCNNGC	4 cut(s)	294, 298, 418, 669
CaiI	CAGNNNCTG	1 cut(s)	529
CciNI	GCGGCCGC	1 cut(s)	233
CfoI	GCGC	6 cut(s)	68, 240, 546, 569, 581, 648
Cfr10I	RCCGGY	2 cut(s)	518, 667
Cfr13I	GGNCC	2 cut(s)	210, 480
Cfr42I	CCGCGG	2 cut(s)	301, 767
ClaI	ATCGAT	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	117, 268
CviAII	CATG	3 cut(s)	207, 289, 664
CviQI	GTAC	2 cut(s)	117, 268
DdeI	CTNAG	2 cut(s)	94, 228
DpnI	GATC	3 cut(s)	10, 44, 168
DpnII	GATC	3 cut(s)	8, 42, 166
EaeI	YGGCCR	4 cut(s)	233, 520, 570, 686
EagI	CGGCCG	1 cut(s)	233
Eam1104I	CTCTTC	2 cut(s)	255, 442
EarI	CTCTTC	2 cut(s)	255, 442
EciI	GGCGGA	3 cut(s)	420, 430, 445
EclXI	CGGCCG	1 cut(s)	233
Eco130I	CCWWGG	1 cut(s)	206
Eco24I	GRGCYC	2 cut(s)	227, 746
Eco31I	GGTCTC	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	480
Eco47III	AGCGCT	2 cut(s)	545, 580
Eco52I	CGGCCG	1 cut(s)	233
Eco88I	CYCGRG	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	480
EcoRII	CCWGG	2 cut(s)	522, 688
EcoT14I	CCWWGG	1 cut(s)	206
EcoT38I	GRGCYC	2 cut(s)	227, 746
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	3 cut(s)	210, 292, 667
FaiI	YATR	6 cut(s)	38, 49, 208, 290, 624, 665
FaqI	GGGAC	2 cut(s)	325, 716
FatI	CATG	3 cut(s)	206, 288, 663
FauI	CCCGC	4 cut(s)	258, 305, 601, 692
FokI	GGATG	1 cut(s)	124
FriOI	GRGCYC	2 cut(s)	227, 746
GlaI	GCGC	6 cut(s)	67, 239, 545, 568, 580, 647
HaeII	RGCGCY	2 cut(s)	547, 582
HaeIII	GGCC	8 cut(s)	92, 212, 235, 416, 522, 537, 572, 688
HapII	CCGG	4 cut(s)	519, 668, 677, 723
HhaI	GCGC	6 cut(s)	68, 240, 546, 569, 581, 648
Hin1II	CATG	3 cut(s)	210, 292, 667
Hin6I	GCGC	6 cut(s)	66, 238, 544, 567, 579, 646
HinP1I	GCGC	6 cut(s)	66, 238, 544, 567, 579, 646
HincII	GTYRAC	1 cut(s)	716
HindII	GTYRAC	1 cut(s)	716
HinfI	GANTC	2 cut(s)	434, 640
HpaII	CCGG	4 cut(s)	519, 668, 677, 723
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	716
Hpy188I	TCNGA	4 cut(s)	319, 433, 595, 639
Hpy188III	TCNNGA	3 cut(s)	28, 342, 723
Hpy8I	GTNNAC	1 cut(s)	716
Hpy99I	CGWCG	2 cut(s)	174, 560
HpyAV	CCTTC	4 cut(s)	141, 214, 520, 590
HpyCH4V	TGCA	2 cut(s)	372, 739
HpyF3I	CTNAG	2 cut(s)	94, 228
Hsp92II	CATG	3 cut(s)	210, 292, 667
HspAI	GCGC	6 cut(s)	66, 238, 544, 567, 579, 646
Kpn2I	TCCGGA	1 cut(s)	722
KroI	GCCGGC	1 cut(s)	667
KroNI	GCCGGC	1 cut(s)	669
KspI	CCGCGG	2 cut(s)	301, 767
Kzo9I	GATC	3 cut(s)	8, 42, 166
Lsp1109I	GCAGC	3 cut(s)	252, 343, 576
MaeIII	GTNAC	3 cut(s)	460, 548, 583
MalI	GATC	3 cut(s)	10, 44, 168
MboI	GATC	3 cut(s)	8, 42, 166
MboII	GAAGA	3 cut(s)	257, 272, 429
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	4 cut(s)	227, 365, 494, 746
MlsI	TGGCCA	1 cut(s)	688
MluCI	AATT	2 cut(s)	75, 320
MluNI	TGGCCA	1 cut(s)	688
MlyI	GAGTC	2 cut(s)	428, 649
MmeI	TCCRAC	1 cut(s)	456
MnlI	CCTC	8 cut(s)	91, 157, 256, 281, 293, 397, 527, 727
Mox20I	TGGCCA	1 cut(s)	688
MroI	TCCGGA	1 cut(s)	722
MroNI	GCCGGC	1 cut(s)	667
MscI	TGGCCA	1 cut(s)	688
MseI	TTAA	1 cut(s)	787
Msp20I	TGGCCA	1 cut(s)	688
MspA1I	CMGCKG	2 cut(s)	300, 766
MspI	CCGG	4 cut(s)	519, 668, 677, 723
MspR9I	CCNGG	2 cut(s)	524, 690
MvaI	CCWGG	2 cut(s)	524, 690
MvnI	CGCG	8 cut(s)	58, 66, 113, 238, 300, 569, 648, 766
NaeI	GCCGGC	1 cut(s)	669
NcoI	CCATGG	1 cut(s)	206
NdeII	GATC	3 cut(s)	8, 42, 166
NgoMIV	GCCGGC	1 cut(s)	667
NlaIII	CATG	3 cut(s)	210, 292, 667
NlaIV	GGNNCC	2 cut(s)	304, 482
NmuCI	GTSAC	3 cut(s)	460, 548, 583
NotI	GCGGCCGC	1 cut(s)	233
NspI	RCATGY	1 cut(s)	667
PdiI	GCCGGC	1 cut(s)	669
PflMI	CCANNNNNTGG	1 cut(s)	529
PleI	GAGTC	2 cut(s)	428, 648
PpsI	GAGTC	2 cut(s)	428, 648
PpuMI	RGGWCCY	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	480
Psp6I	CCWGG	2 cut(s)	522, 688
PspGI	CCWGG	2 cut(s)	522, 688
PspN4I	GGNNCC	2 cut(s)	304, 482
PspPI	GGNCC	2 cut(s)	210, 480
PspPPI	RGGWCCY	1 cut(s)	480
PstNI	CAGNNNCTG	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	8
RsaI	GTAC	2 cut(s)	118, 269
RsaNI	GTAC	2 cut(s)	117, 268
SacII	CCGCGG	2 cut(s)	301, 767
SaqAI	TTAA	1 cut(s)	787
Sau3AI	GATC	3 cut(s)	8, 42, 166
Sau96I	GGNCC	2 cut(s)	210, 480
SchI	GAGTC	2 cut(s)	428, 649
ScrFI	CCNGG	2 cut(s)	524, 690
SduI	GDGCHC	4 cut(s)	227, 365, 494, 746
SetI	ASST	8 cut(s)	162, 273, 317, 351, 400, 512, 660, 738
Sfr303I	CCGCGG	2 cut(s)	301, 767
SgrBI	CCGCGG	2 cut(s)	301, 767
SinI	GGWCC	1 cut(s)	480
Sse9I	AATT	2 cut(s)	75, 320
StyD4I	CCNGG	2 cut(s)	522, 688
StyI	CCWWGG	1 cut(s)	206
TaqI	TCGA	2 cut(s)	29, 41
TasI	AATT	2 cut(s)	75, 320
Tru1I	TTAA	1 cut(s)	787
Tru9I	TTAA	1 cut(s)	787
TscAI	CASTG	2 cut(s)	313, 534
TseFI	GTSAC	3 cut(s)	460, 548, 583
TseI	GCWGC	3 cut(s)	240, 331, 564
Tsp45I	GTSAC	3 cut(s)	460, 548, 583
TspDTI	ATGAA	2 cut(s)	17, 135
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	2 cut(s)	313, 534
Van91I	CCANNNNNTGG	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	480
XceI	RCATGY	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.