pycom10g09300

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013602
Physical Location & Seq
Forward (+)
12296215 .. 12296971
757 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 636 bp
ATGACCACCAAACCCACCACCACCACCACCTCTCACCACCAATGTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGATGAAACCACCACCACCTCCAGTCTCACCCATCTGATCGACTCCGAGCCCAACCACATGCCCTCCCCTTCCTACATCTCCATGTTCCGCGACCGTACGATCGACCTCACCGCCCGCCAGGACTCCATCAACTGGATCTTAAAAGTCCACACCCACCACCGCTTCTCCCCCCTCACCGCCTTCCTCTCCGTCAACTATTTCGACCGCTTTCTCTCCTCCCACTCCCTGCCGCGACACAGCGGGTCGTGGCCGTTTCAGCTGCTGTCCGTCGCCTGTTTGTCTTTAGCCGCGAAAATGGAGGAGCCGAACGTCCCGTTCATCCTGGACCTCCAGATCTTCGAGCCCAAGTTCGTCTTCGAGCCCAAAACGATCCAGCGGATGGAGCTCCGGGTCATGGGTATTCTTAATTGGAGGCTCCGATCCGTCACCCCCTTCGATTTCCTCCCCCATTTCGTCTCCAATCTCCCCTCTTCCTCCTCTCTCATCGCAGCCTCCTCCAATTTAGTTTTCAGCACCATTCGTGGTATTTTTACTGATTCACTACCCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

212

Amino Acids

23.86

Weight (kDa)

6.79

Isoelectric Point (pI)

60.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 37 - 168 6.6e-31 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013602)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03630 FvH4_2g03630 FvH4_2g03630 FvH4_2g03630
malus_domestica MD05G1102100.v1.1
prunus_persica Prupe.8G146700_v2.0.a1
pyrus_communis pycom10g09300
rosa_chinensis RchiOBHm_Chr6g0252631
rosa_laevigata RLG00000015079
rosa_multiflora Rmu_co8165678.1_g000001 Rmu_sc0002016.1_g000045 Rmu_sc0004969.1_g000001
rosa_roxburghii Rroxscaffold_7G00212510
rosa_rugosa Rorug05G0537200
rosa_samantha Rh6AG053900 Rh6CG046300 Rh6DG041900
rosa_wichuraiana Rw6G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 216, 463
AccII CGCG 3 cut(s) 174, 316, 374
AclWI GGATC 3 cut(s) 227, 448, 498
AcoI YGGCCR 1 cut(s) 332
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 3 cut(s) 216, 463, 478
AjnI CCWGG 2 cut(s) 201, 405
AjuI GAANNNNNNNTTGG 4 cut(s) 422, 454, 575, 607
AluBI AGCT 2 cut(s) 343, 469
AluI AGCT 2 cut(s) 343, 469
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 2 cut(s) 113, 544
AlwI GGATC 3 cut(s) 227, 448, 498
AlwNI CAGNNNCTG 1 cut(s) 346
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 2 cut(s) 343, 572
AspS9I GGNCC 1 cut(s) 409
AsuC2I CCSGG 1 cut(s) 473
AsuHPI GGTGA 5 cut(s) 26, 103, 184, 250, 502
AvaII GGWCC 1 cut(s) 409
BanII GRGCYC 4 cut(s) 135, 429, 447, 471
BbsI GAAGAC 2 cut(s) 38, 430
Bbv12I GWGCWC 1 cut(s) 471
BbvI GCAGC 2 cut(s) 330, 584
BccI CCATC 3 cut(s) 123, 218, 457
BceAI ACGGC 1 cut(s) 319
BciT130I CCWGG 2 cut(s) 203, 407
BcnI CCSGG 1 cut(s) 473
BcoDI GTCTC 2 cut(s) 113, 544
BglII AGATCT 1 cut(s) 417
BisI GCNGC 4 cut(s) 314, 344, 372, 573
BlsI GCNGC 4 cut(s) 315, 345, 373, 574
Bme1390I CCNGG 3 cut(s) 203, 407, 473
Bme18I GGWCC 1 cut(s) 409
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 2 cut(s) 387, 500
BmrFI CCNGG 3 cut(s) 203, 407, 473
BpiI GAAGAC 2 cut(s) 38, 430
BpmI CTGGAG 2 cut(s) 88, 398
BpuMI CCSGG 1 cut(s) 473
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 233, 263
Bsc4I CCNNNNNNNGG 3 cut(s) 216, 463, 478
Bse1I ACTGG 2 cut(s) 105, 221
BseBI CCWGG 2 cut(s) 203, 407
BseGI GGATG 2 cut(s) 402, 468
BseLI CCNNNNNNNGG 3 cut(s) 216, 463, 478
BseNI ACTGG 2 cut(s) 105, 221
BseXI GCAGC 2 cut(s) 330, 584
Bsh1236I CGCG 3 cut(s) 174, 316, 374
Bsh1285I CGRYCG 3 cut(s) 178, 186, 289
BshFI GGCC 1 cut(s) 334
BsiEI CGRYCG 3 cut(s) 178, 186, 289
BsiHKAI GWGCWC 1 cut(s) 471
BsiSI CCGG 1 cut(s) 472
BsiWI CGTACG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 3 cut(s) 216, 463, 478
BsmAI GTCTC 2 cut(s) 113, 544
BsmBI CGTCTC 1 cut(s) 544
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 1 cut(s) 334
Bsp1286I GDGCHC 4 cut(s) 135, 429, 447, 471
Bsp143I GATC 6 cut(s) 120, 183, 219, 417, 453, 503
BspANI GGCC 1 cut(s) 334
BspFNI CGCG 3 cut(s) 174, 316, 374
BspLI GGNNCC 2 cut(s) 387, 500
BspPI GGATC 3 cut(s) 227, 448, 498
BsrI ACTGG 2 cut(s) 105, 221
BssMI GATC 6 cut(s) 120, 183, 219, 417, 453, 503
Bst2UI CCWGG 2 cut(s) 203, 407
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 2 cut(s) 57, 559
BstC8I GCNNGC 1 cut(s) 199
BstF5I GGATG 2 cut(s) 402, 468
BstFNI CGCG 3 cut(s) 174, 316, 374
BstKTI GATC 6 cut(s) 123, 186, 222, 420, 456, 506
BstMAI GTCTC 2 cut(s) 113, 544
BstMBI GATC 6 cut(s) 120, 183, 219, 417, 453, 503
BstMCI CGRYCG 3 cut(s) 178, 186, 289
BstMWI GCNNNNNNNGC 2 cut(s) 340, 466
BstNI CCWGG 2 cut(s) 203, 407
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 3 cut(s) 201, 405, 471
BstUI CGCG 3 cut(s) 174, 316, 374
BstV1I GCAGC 2 cut(s) 330, 584
BstV2I GAAGAC 2 cut(s) 38, 430
BstX2I RGATCY 2 cut(s) 219, 417
BstYI RGATCY 2 cut(s) 219, 417
BsuRI GGCC 1 cut(s) 334
BtgZI GCGATG 1 cut(s) 553
BtsCI GGATG 2 cut(s) 402, 468
Cac8I GCNNGC 1 cut(s) 199
CaiI CAGNNNCTG 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 409
Csp6I GTAC 1 cut(s) 180
CviAII CATG 3 cut(s) 142, 166, 478
CviQI GTAC 1 cut(s) 180
DpnI GATC 6 cut(s) 122, 185, 221, 419, 455, 505
DpnII GATC 6 cut(s) 120, 183, 219, 417, 453, 503
EaeI YGGCCR 1 cut(s) 332
Eam1104I CTCTTC 2 cut(s) 57, 559
EarI CTCTTC 2 cut(s) 57, 559
Ecl136II GAGCTC 1 cut(s) 469
Eco24I GRGCYC 4 cut(s) 135, 429, 447, 471
Eco47I GGWCC 1 cut(s) 409
Eco53kI GAGCTC 1 cut(s) 469
EcoICRI GAGCTC 1 cut(s) 469
EcoRII CCWGG 2 cut(s) 201, 405
EcoT38I GRGCYC 4 cut(s) 135, 429, 447, 471
Esp3I CGTCTC 1 cut(s) 544
FaeI CATG 3 cut(s) 145, 169, 481
FaiI YATR 3 cut(s) 143, 167, 479
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FaqI GGGAC 1 cut(s) 380
FatI CATG 3 cut(s) 141, 165, 477
FauI CCCGC 2 cut(s) 206, 317
Fnu4HI GCNGC 4 cut(s) 314, 344, 372, 573
FokI GGATG 2 cut(s) 389, 475
FriOI GRGCYC 4 cut(s) 135, 429, 447, 471
Fsp4HI GCNGC 4 cut(s) 314, 344, 372, 573
GluI GCNGC 4 cut(s) 314, 344, 372, 573
GsuI CTGGAG 2 cut(s) 88, 398
HaeIII GGCC 1 cut(s) 334
HapII CCGG 1 cut(s) 472
Hin1II CATG 3 cut(s) 145, 169, 481
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 3 cut(s) 125, 206, 620
HpaII CCGG 1 cut(s) 472
HphI GGTGA 5 cut(s) 26, 103, 184, 250, 502
Hpy166II GTNNAC 2 cut(s) 232, 277
Hpy188I TCNGA 3 cut(s) 120, 130, 503
Hpy188III TCNNGA 2 cut(s) 83, 415
Hpy8I GTNNAC 2 cut(s) 232, 277
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 3 cut(s) 162, 274, 526
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4IV ACGT 1 cut(s) 393
HpyF10VI GCNNNNNNNGC 2 cut(s) 340, 466
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 3 cut(s) 145, 169, 481
Kzo9I GATC 6 cut(s) 120, 183, 219, 417, 453, 503
LmnI GCTCC 4 cut(s) 385, 466, 474, 504
Lsp1109I GCAGC 2 cut(s) 330, 584
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 508
MalI GATC 6 cut(s) 122, 185, 221, 419, 455, 505
MboI GATC 6 cut(s) 120, 183, 219, 417, 453, 503
MboII GAAGA 5 cut(s) 38, 44, 412, 430, 546
MflI RGATCY 2 cut(s) 219, 417
MhlI GDGCHC 4 cut(s) 135, 429, 447, 471
MluCI AATT 2 cut(s) 490, 583
MlyI GAGTC 2 cut(s) 119, 200
MseI TTAA 3 cut(s) 224, 489, 634
MslI CAYNNNNRTG 1 cut(s) 164
MspA1I CMGCKG 3 cut(s) 324, 343, 460
MspI CCGG 1 cut(s) 472
MspR9I CCNGG 3 cut(s) 203, 407, 473
MvaI CCWGG 2 cut(s) 203, 407
MvnI CGCG 3 cut(s) 174, 316, 374
MwoI GCNNNNNNNGC 2 cut(s) 340, 466
NciI CCSGG 1 cut(s) 473
NdeII GATC 6 cut(s) 120, 183, 219, 417, 453, 503
NlaIII CATG 3 cut(s) 145, 169, 481
NlaIV GGNNCC 2 cut(s) 387, 500
NmuCI GTSAC 1 cut(s) 508
NspI RCATGY 1 cut(s) 145
PfeI GAWTC 1 cut(s) 620
Pfl23II CGTACG 1 cut(s) 179
PflMI CCANNNNNTGG 2 cut(s) 216, 463
PfoI TCCNGGA 1 cut(s) 405
PkrI GCNGC 4 cut(s) 315, 345, 373, 574
Ple19I CGATCG 1 cut(s) 186
PleI GAGTC 2 cut(s) 119, 200
PpsI GAGTC 2 cut(s) 119, 200
Psp124BI GAGCTC 1 cut(s) 471
Psp6I CCWGG 2 cut(s) 201, 405
PspGI CCWGG 2 cut(s) 201, 405
PspLI CGTACG 1 cut(s) 179
PspN4I GGNNCC 2 cut(s) 387, 500
PspPI GGNCC 1 cut(s) 409
PstNI CAGNNNCTG 1 cut(s) 346
PsuI RGATCY 2 cut(s) 219, 417
PvuI CGATCG 1 cut(s) 186
PvuII CAGCTG 1 cut(s) 343
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
RseI CAYNNNNRTG 1 cut(s) 164
SacI GAGCTC 1 cut(s) 471
SaqAI TTAA 3 cut(s) 224, 489, 634
SatI GCNGC 4 cut(s) 314, 344, 372, 573
Sau3AI GATC 6 cut(s) 120, 183, 219, 417, 453, 503
Sau96I GGNCC 1 cut(s) 409
SchI GAGTC 2 cut(s) 119, 200
ScrFI CCNGG 3 cut(s) 203, 407, 473
SduI GDGCHC 4 cut(s) 135, 429, 447, 471
SetI ASST 7 cut(s) 32, 104, 192, 345, 396, 414, 471
SinI GGWCC 1 cut(s) 409
SmiMI CAYNNNNRTG 1 cut(s) 164
Sse9I AATT 2 cut(s) 490, 583
SstI GAGCTC 1 cut(s) 471
StyD4I CCNGG 3 cut(s) 201, 405, 471
TaaI ACNGT 1 cut(s) 179
TaiI ACGT 1 cut(s) 396
TaqI TCGA 6 cut(s) 123, 186, 285, 423, 441, 519
TasI AATT 2 cut(s) 490, 583
TauI GCSGC 2 cut(s) 316, 374
TfiI GAWTC 1 cut(s) 620
Tru1I TTAA 3 cut(s) 224, 489, 634
Tru9I TTAA 3 cut(s) 224, 489, 634
TseFI GTSAC 1 cut(s) 508
TseI GCWGC 2 cut(s) 343, 572
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 2 cut(s) 102, 391
TspGWI ACGGA 3 cut(s) 262, 340, 496
Van91I CCANNNNNTGG 2 cut(s) 216, 463
VpaK11BI GGWCC 1 cut(s) 409
XceI RCATGY 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.