Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007110

Physical Location & Seq

Genomic Coordinates Reverse (-)

13048865 .. 13049782

Gene Structure 918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGATTTAGAGACGGAGAACAGAATAGCTGCAATTCTTATGAGAGAAGCCGCTGAATTGCGGCGTCAAGCTGAGAAGGAAGGTGTGCTTGCTTATCTTCAACAGCCTAAAACAAGGTTCCGGCCGAATTCACGCTTGCTCAGTGCTACTGTTCGAGGTGTGCAACAAGCAAATCGAGTTGTTGAAGTGAATGAAATGTGGCGACTCCGGCAGAAAGAGAAGGAATTGGACAATAGGCTGAAAGGGAACAAGGATGAGAGCAGGTGTCGCGGAGATAGCAACTCTCCGAGATGCAGTGGTAAGGGACATGCCGTCGCAGATGACAGCGCCGGTCCTTCTTGCTCTTCAAGGAAAAGAGAATACGAGAGCTGCCATTCAAGGCAAGAGAATGGTTTAGGAGACGAAGAACTCGAAGAATTTTTACATTCAAGAGTCAAGCGTGGCAGAGGTGCTGTTGGGTCAAGGATGGATGAGAAGGGTCCTTATCTTCCCCATTCTTCGGACTCCAAGGAAGAGCAGCTGCAGAGTCCCGGTGTACAAGAACGCCGTGCGTATGGACCAGAGAGGCCTTCACATAACTTATGTTATCCTTCCGAAGAGGAGCATGACGATGAGAGGAAGAAATCAAAAAAGGTGAAGTCTGGTAGCCCGAACAAGCACAAATCCAAGGAAAAATCTAAAGAGAAGAAGAGGAAGGACGAAAAAAGAAATAAATACCATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

27.73

Weight (kDa)

9.46

Isoelectric Point (pI)

66.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33690
fragaria_vesca	FvH4_2g02710 FvH4_2g02710 FvH4_2g02710
malus_domestica	MD05G1110900.v1.1 MD10G1114400.v1.1
prunus_persica	Prupe.8G155900_v2.0.a1 Prupe.8G155900_v2.0.a1
pyrus_communis	pycom10g09880
rosa_chinensis	RchiOBHm_Chr6g0247131
rosa_laevigata	RLG00000015218 RLG00000030364
rosa_multiflora	Rmu_sc0004577.1_g000013
rosa_roxburghii	Rroxscaffold_7G00214320
rosa_rugosa	Rorug05G0522700 Rorug05G0522700 Rorug05G0522700 Rorug05G0522800 Rorug05G0522900 Rorug05G0522900
rosa_samantha	Rh6AG037900 Rh6BG032800 Rh6CG033600 Rh6DG031300
rosa_wichuraiana	Rw6G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	252
AccII	CGCG	1 cut(s)	270
AciI	CCGC	3 cut(s)	51, 61, 270
AcoI	YGGCCR	1 cut(s)	122
AcsI	RAATTY	2 cut(s)	127, 416
AcyI	GRCGYC	1 cut(s)	64
AfaI	GTAC	1 cut(s)	537
AfiI	CCNNNNNNNGG	1 cut(s)	499
AgsI	TTSAA	5 cut(s)	101, 185, 348, 378, 429
AhdI	GACNNNNNGTC	1 cut(s)	311
AluBI	AGCT	4 cut(s)	29, 71, 369, 520
AluI	AGCT	4 cut(s)	29, 71, 369, 520
Alw26I	GTCTC	2 cut(s)	5, 393
AoxI	GGCC	2 cut(s)	122, 566
ApeKI	GCWGC	4 cut(s)	29, 369, 517, 520
ApoI	RAATTY	2 cut(s)	127, 416
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	3 cut(s)	332, 479, 557
AsuC2I	CCSGG	1 cut(s)	531
AsuHPI	GGTGA	1 cut(s)	646
AvaII	GGWCC	3 cut(s)	332, 479, 557
BarI	GAAGNNNNNNTAC	2 cut(s)	405, 437
BbvI	GCAGC	4 cut(s)	16, 356, 507, 529
BccI	CCATC	1 cut(s)	460
BceAI	ACGGC	2 cut(s)	296, 531
BcnI	CCSGG	1 cut(s)	531
BcoDI	GTCTC	2 cut(s)	5, 393
BfmI	CTRYAG	1 cut(s)	521
BfoI	RGCGCY	1 cut(s)	330
BfuAI	ACCTGC	1 cut(s)	252
BisI	GCNGC	6 cut(s)	30, 51, 62, 370, 518, 521
BlsI	GCNGC	6 cut(s)	31, 52, 63, 371, 519, 522
Bme1390I	CCNGG	1 cut(s)	531
Bme18I	GGWCC	3 cut(s)	332, 479, 557
BmeRI	GACNNNNNGTC	1 cut(s)	311
BmgT120I	GGNCC	3 cut(s)	332, 479, 557
BmiI	GGNNCC	2 cut(s)	119, 480
BmrFI	CCNGG	1 cut(s)	531
BmsI	GCATC	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	507, 666
Bsc4I	CCNNNNNNNGG	1 cut(s)	499
Bse118I	RCCGGY	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	507, 666
BseGI	GGATG	3 cut(s)	259, 471, 475
BseLI	CCNNNNNNNGG	1 cut(s)	499
BseMII	CTCAG	2 cut(s)	63, 154
BseRI	GAGGAG	1 cut(s)	614
BseX3I	CGGCCG	1 cut(s)	122
BseXI	GCAGC	4 cut(s)	16, 356, 507, 529
Bsh1236I	CGCG	1 cut(s)	270
Bsh1285I	CGRYCG	1 cut(s)	125
BshFI	GGCC	2 cut(s)	124, 568
BsiEI	CGRYCG	1 cut(s)	125
BsiSI	CCGG	4 cut(s)	121, 208, 330, 531
BslFI	GGGAC	2 cut(s)	318, 513
BslI	CCNNNNNNNGG	1 cut(s)	499
BsmAI	GTCTC	2 cut(s)	5, 393
BsmBI	CGTCTC	2 cut(s)	5, 393
BsmFI	GGGAC	2 cut(s)	318, 513
BsnI	GGCC	2 cut(s)	124, 568
Bsp1407I	TGTACA	1 cut(s)	535
BspACI	CCGC	3 cut(s)	51, 61, 270
BspANI	GGCC	2 cut(s)	124, 568
BspCNI	CTCAG	2 cut(s)	64, 153
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	119, 480
BspMAI	CTGCAG	1 cut(s)	525
BspMI	ACCTGC	1 cut(s)	252
BspQI	GCTCTTC	2 cut(s)	349, 507
BsrFI	RCCGGY	1 cut(s)	329
BsrGI	TGTACA	1 cut(s)	535
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	2 cut(s)	507, 666
BssNI	GRCGYC	1 cut(s)	64
BssT1I	CCWWGG	2 cut(s)	507, 666
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	4 cut(s)	349, 507, 591, 683
BstACI	GRCGYC	1 cut(s)	64
BstAUI	TGTACA	1 cut(s)	535
BstC8I	GCNNGC	2 cut(s)	90, 137
BstDEI	CTNAG	2 cut(s)	72, 140
BstF5I	GGATG	3 cut(s)	259, 471, 475
BstFNI	CGCG	1 cut(s)	270
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	329
BstMAI	GTCTC	2 cut(s)	5, 393
BstMCI	CGRYCG	1 cut(s)	125
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 267, 276
BstNSI	RCATGY	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	529
BstSFI	CTRYAG	1 cut(s)	521
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	4 cut(s)	16, 356, 507, 529
BstZI	CGGCCG	1 cut(s)	122
BsuRI	GGCC	2 cut(s)	124, 568
BtsCI	GGATG	3 cut(s)	259, 471, 475
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	2 cut(s)	148, 301
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	2 cut(s)	90, 137
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	3 cut(s)	332, 479, 557
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	536
CviAII	CATG	2 cut(s)	308, 605
CviQI	GTAC	1 cut(s)	536
DdeI	CTNAG	2 cut(s)	72, 140
DriI	GACNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	1 cut(s)	122
EagI	CGGCCG	1 cut(s)	122
Eam1104I	CTCTTC	4 cut(s)	349, 507, 591, 683
Eam1105I	GACNNNNNGTC	1 cut(s)	311
EarI	CTCTTC	4 cut(s)	349, 507, 591, 683
EclXI	CGGCCG	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	507, 666
Eco147I	AGGCCT	1 cut(s)	568
Eco47I	GGWCC	3 cut(s)	332, 479, 557
Eco52I	CGGCCG	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	127
EcoT14I	CCWWGG	2 cut(s)	507, 666
ErhI	CCWWGG	2 cut(s)	507, 666
Esp3I	CGTCTC	2 cut(s)	5, 393
FaeI	CATG	2 cut(s)	311, 608
FaiI	YATR	7 cut(s)	41, 309, 555, 576, 583, 606, 720
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FaqI	GGGAC	2 cut(s)	318, 513
FatI	CATG	2 cut(s)	307, 604
Fnu4HI	GCNGC	6 cut(s)	30, 51, 62, 370, 518, 521
FokI	GGATG	3 cut(s)	266, 478, 482
Fsp4HI	GCNGC	6 cut(s)	30, 51, 62, 370, 518, 521
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	6 cut(s)	30, 51, 62, 370, 518, 521
HaeII	RGCGCY	1 cut(s)	330
HaeIII	GGCC	2 cut(s)	124, 568
HapII	CCGG	4 cut(s)	121, 208, 330, 531
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	1 cut(s)	329
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	2 cut(s)	311, 608
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HinfI	GANTC	4 cut(s)	204, 432, 503, 526
HpaII	CCGG	4 cut(s)	121, 208, 330, 531
HphI	GGTGA	1 cut(s)	646
Hpy166II	GTNNAC	1 cut(s)	536
Hpy188I	TCNGA	3 cut(s)	288, 502, 595
Hpy188III	TCNNGA	1 cut(s)	429
Hpy8I	GTNNAC	1 cut(s)	536
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	8 cut(s)	70, 74, 214, 345, 469, 579, 600, 688
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	4 cut(s)	32, 163, 294, 523
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 267, 276
HpyF3I	CTNAG	2 cut(s)	72, 140
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	2 cut(s)	311, 608
HspAI	GCGC	1 cut(s)	327
LguI	GCTCTTC	2 cut(s)	349, 507
LmnI	GCTCC	1 cut(s)	601
LpnPI	CCDG	7 cut(s)	134, 221, 247, 343, 544, 573, 627
Lsp1109I	GCAGC	4 cut(s)	16, 356, 507, 529
LweI	GCATC	1 cut(s)	281
MluCI	AATT	5 cut(s)	33, 56, 127, 224, 416
MlyI	GAGTC	4 cut(s)	198, 441, 497, 535
MnlI	CCTC	6 cut(s)	149, 440, 558, 592, 609, 684
MseI	TTAA	1 cut(s)	724
MslI	CAYNNNNRTG	1 cut(s)	609
MspA1I	CMGCKG	2 cut(s)	53, 520
MspI	CCGG	4 cut(s)	121, 208, 330, 531
MspR9I	CCNGG	1 cut(s)	531
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	3 cut(s)	208, 267, 276
NciI	CCSGG	1 cut(s)	531
NlaIII	CATG	2 cut(s)	311, 608
NlaIV	GGNNCC	2 cut(s)	119, 480
NspI	RCATGY	1 cut(s)	311
PaqCI	CACCTGC	1 cut(s)	252
PceI	AGGCCT	1 cut(s)	568
PciSI	GCTCTTC	2 cut(s)	349, 507
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PkrI	GCNGC	6 cut(s)	31, 52, 63, 371, 519, 522
PleI	GAGTC	4 cut(s)	198, 440, 497, 534
PpsI	GAGTC	4 cut(s)	198, 440, 497, 534
PpuMI	RGGWCCY	1 cut(s)	479
Psp5II	RGGWCCY	1 cut(s)	479
PspN4I	GGNNCC	2 cut(s)	119, 480
PspPI	GGNCC	3 cut(s)	332, 479, 557
PspPPI	RGGWCCY	1 cut(s)	479
PstI	CTGCAG	1 cut(s)	525
PvuII	CAGCTG	1 cut(s)	520
RsaI	GTAC	1 cut(s)	537
RsaNI	GTAC	1 cut(s)	536
RseI	CAYNNNNRTG	1 cut(s)	609
SapI	GCTCTTC	2 cut(s)	349, 507
SaqAI	TTAA	1 cut(s)	724
SatI	GCNGC	6 cut(s)	30, 51, 62, 370, 518, 521
Sau96I	GGNCC	3 cut(s)	332, 479, 557
SchI	GAGTC	4 cut(s)	198, 441, 497, 535
ScrFI	CCNGG	1 cut(s)	531
SfaNI	GCATC	1 cut(s)	281
SfcI	CTRYAG	1 cut(s)	521
SinI	GGWCC	3 cut(s)	332, 479, 557
SmiMI	CAYNNNNRTG	1 cut(s)	609
Sse9I	AATT	5 cut(s)	33, 56, 127, 224, 416
SseBI	AGGCCT	1 cut(s)	568
SsiI	CCGC	3 cut(s)	51, 61, 270
StuI	AGGCCT	1 cut(s)	568
StyD4I	CCNGG	1 cut(s)	529
StyI	CCWWGG	2 cut(s)	507, 666
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	3 cut(s)	154, 175, 411
TasI	AATT	5 cut(s)	33, 56, 127, 224, 416
TatI	WGTACW	1 cut(s)	535
TauI	GCSGC	2 cut(s)	53, 64
Tru1I	TTAA	1 cut(s)	724
Tru9I	TTAA	1 cut(s)	724
TscAI	CASTG	2 cut(s)	148, 301
TseI	GCWGC	4 cut(s)	29, 369, 517, 520
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	2 cut(s)	148, 301
VpaK11BI	GGWCC	3 cut(s)	332, 479, 557
XapI	RAATTY	2 cut(s)	127, 416
XceI	RCATGY	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.