Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009314

Physical Location & Seq

Genomic Coordinates Reverse (-)

13496888 .. 13498202

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCGGTGGCCTCCACATCTCTCGCCTCCCAACTCTCCAGCCCTAAATCGCTCTCCTCTTACTCCGGCCTCCGTCCGTCGTGCTGCAAGCTCGAATTCTCTCACTCTCTCTCCGCCACCCAATCCCTCTTCCAGCACCTTCACTCCCACCTCCGCCTCTCCTCCTCCTCTCGCAAGGCCTCCAGAGGCGTCGTCGCCATGGCCGGCACCGGAAAGTTTTTTGTTGGTGGAAACTGGAAGTGTAATGGCACAAAAGACTCCATAAGAAAGCTAGTCGCTGACTTGAACAGCGCAAAATTGGAAGTGGATGTTGATGTTGTTGTAGCACCACCATTTCTTTACTTAGATCGATCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0004807 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006066 GO:0006071 GO:0006081 GO:0006082 GO:0006090 GO:0006091 GO:0006094 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006642 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0016043 GO:0016051 GO:0016052 GO:0016053 GO:0016310 GO:0016853 GO:0016860 GO:0016861 GO:0017144 GO:0018130 GO:0019318 GO:0019319 GO:0019359 GO:0019362 GO:0019363 GO:0019400 GO:0019405 GO:0019438 GO:0019439 GO:0019563 GO:0019637 GO:0019682 GO:0019693 GO:0019751 GO:0019752 GO:0022622 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042866 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044262 GO:0044270 GO:0044271 GO:0044275 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046164 GO:0046166 GO:0046174 GO:0046184 GO:0046364 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046486 GO:0046496 GO:0046700 GO:0046939 GO:0048046 GO:0048364 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0071840 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080022 GO:0090407 GO:0099402 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00010 ko00051 ko00562 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00051 map00562 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

TIM

Protein Analysis

120

Amino Acids

12.75

Weight (kDa)

9.82

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21170 AT2G21170 AT2G21170
fragaria_vesca	FvH4_2g02030
malus_domestica	MD05G1115700.v1.1 MD10G1118200.v1.1
prunus_persica	Prupe.8G160500_v2.0.a1 Prupe.8G160500_v2.0.a1
pyrus_communis	pycom05g11000 pycom10g10210
rosa_chinensis	RchiOBHm_Chr6g0245261
rosa_laevigata	RLG00000008493 RLG00000015312
rosa_multiflora	Rmu_sc0001288.1_g000010 Rmu_sc0005398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215320
rosa_rugosa	Rorug05G0513100
rosa_samantha	Rh6AG028400 Rh6BG024600 Rh6CG022700 Rh6DG022700
rosa_wichuraiana	Rw6G002390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	206
AciI	CCGC	3 cut(s)	5, 114, 154
AclWI	GGATC	1 cut(s)	345
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	95
AcyI	GRCGYC	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	286
AluBI	AGCT	2 cut(s)	91, 271
AluI	AGCT	2 cut(s)	91, 271
AlwI	GGATC	1 cut(s)	345
AoxI	GGCC	4 cut(s)	9, 67, 177, 201
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	272
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	208
BpmI	CTGGAG	2 cut(s)	22, 166
Bsa29I	ATCGAT	1 cut(s)	349
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	209
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 128, 158
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	239
BseCI	ATCGAT	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	1 cut(s)	313
BseNI	ACTGG	1 cut(s)	239
BseRI	GAGGAG	4 cut(s)	46, 151, 154, 157
BseXI	GCAGC	1 cut(s)	71
BshFI	GGCC	4 cut(s)	11, 69, 179, 203
BshNI	GGYRCC	1 cut(s)	206
BshVI	ATCGAT	1 cut(s)	349
BsiSI	CCGG	3 cut(s)	66, 204, 210
BsnI	GGCC	4 cut(s)	11, 69, 179, 203
Bsp143I	GATC	2 cut(s)	346, 350
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	3 cut(s)	5, 114, 154
BspANI	GGCC	4 cut(s)	11, 69, 179, 203
BspDI	ATCGAT	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	208
BspPI	GGATC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	239
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	2 cut(s)	346, 350
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	198
Bst6I	CTCTTC	1 cut(s)	134
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	89, 205
BstDEI	CTNAG	1 cut(s)	343
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	2 cut(s)	349, 353
BstMBI	GATC	2 cut(s)	346, 350
BstV1I	GCAGC	1 cut(s)	71
Bsu15I	ATCGAT	1 cut(s)	349
BsuRI	GGCC	4 cut(s)	11, 69, 179, 203
BsuTUI	ATCGAT	1 cut(s)	349
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	89, 205
CfoI	GCGC	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	203
ClaI	ATCGAT	1 cut(s)	349
CseI	GACGC	1 cut(s)	178
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	7 cut(s)	11, 42, 69, 91, 179, 203, 271
CviKI_1	RGCY	7 cut(s)	11, 42, 69, 91, 179, 203, 271
DdeI	CTNAG	1 cut(s)	343
DpnI	GATC	2 cut(s)	348, 352
DpnII	GATC	2 cut(s)	346, 350
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
EciI	GGCGGA	2 cut(s)	103, 143
Eco130I	CCWWGG	1 cut(s)	198
Eco147I	AGGCCT	1 cut(s)	179
EcoRI	GAATTC	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	1 cut(s)	202
FaiI	YATR	2 cut(s)	200, 263
FatI	CATG	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	85
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	1 cut(s)	85
GsuI	CTGGAG	2 cut(s)	22, 166
HaeIII	GGCC	4 cut(s)	11, 69, 179, 203
HapII	CCGG	3 cut(s)	66, 204, 210
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	3 cut(s)	66, 204, 210
Hpy188III	TCNNGA	1 cut(s)	183
Hpy99I	CGWCG	3 cut(s)	82, 194, 197
HpyAV	CCTTC	1 cut(s)	149
HpyCH4V	TGCA	1 cut(s)	87
HpyF3I	CTNAG	1 cut(s)	343
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	1 cut(s)	291
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	346, 350
LpnPI	CCDG	7 cut(s)	52, 79, 146, 196, 217, 220, 223
Lsp1109I	GCAGC	1 cut(s)	71
MaeI	CTAG	1 cut(s)	272
MalI	GATC	2 cut(s)	348, 352
MboI	GATC	2 cut(s)	346, 350
MboII	GAAGA	1 cut(s)	121
MluCI	AATT	2 cut(s)	95, 296
MlyI	GAGTC	1 cut(s)	251
MroNI	GCCGGC	1 cut(s)	203
MspI	CCGG	3 cut(s)	66, 204, 210
NaeI	GCCGGC	1 cut(s)	205
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	2 cut(s)	346, 350
NgoMIV	GCCGGC	1 cut(s)	203
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	179
PdiI	GCCGGC	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	86
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	208
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	2 cut(s)	346, 350
SchI	GAGTC	1 cut(s)	251
SetI	ASST	4 cut(s)	93, 141, 153, 273
Sse9I	AATT	2 cut(s)	95, 296
SseBI	AGGCCT	1 cut(s)	179
SsiI	CCGC	3 cut(s)	5, 114, 154
SspMI	CTAG	1 cut(s)	272
StuI	AGGCCT	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	198
TaqI	TCGA	2 cut(s)	93, 349
TasI	AATT	2 cut(s)	95, 296
TseI	GCWGC	1 cut(s)	84
TspGWI	ACGGA	2 cut(s)	62, 66
XapI	RAATTY	1 cut(s)	95
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.