Rorug05G0513100

Triosephosphate isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000234
Physical Location & Seq
Forward (+)
69735616 .. 69744061
8446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0513100.1

Sequence Viewer

Length: 2868 bp
ATGGCTTCTTCCAGCAAGATGGAATCTTCCGCAGACGACCAAGCTCAACAGGAGGAGGAGGACGACGACGAGGTTGAGCATTTTGATGATTTCACTCTTGCCTCTTCATGGGAAAGGTTCATTTCTGATATAGAGGCGGTTTGTAGGCAATGGATAGCCGACGGTCCGAAAAATCTGTTGAAAAAGGATGCAAGGGAGGTTTCAGAGGAGTTTTATAAGGTTAAATATGAGTTGAAGTTTGCAGTGAAAAGTTACTGCATGGAATACTACTTTGGATCTAAAAATGACGGTAAAGTTATGGATTGGGATCCCAGATTGCATGATTTGCAGTTGTGCTTTGGGGTCAAAGATTTTTTGGTAATTGCTCCACAAAGTGCCAGCGGAGTGGTTCTTGACGCTCCTGAGGCTAGCAAGCTTTTAAGTGCAGTTGCAATTGCTTTATCAAATTGTTCAAGTTTGTGGCCCGCATTTGTCCCGGTGCATGTTCCTGCTAGGAAAGCTTACATTGGCATTCAGAATATGGGAACAGTTTTCACTAGAAGATTTGAGGCTGATCATATTGGTAGCCAGGTTCCAGTAAAACTTATGCATTTGGAAGGATTATACGAGTTGTTTGTTTCTAAATTTGCCTACTCCACATTGGACTTTTCCATGCATCTCTTCAAAGTCCATTTTACTATGAAGCTAACCTACAGATCCCTTCCGCCTGATGACGATGATGTACAAAGAGCTGATGCTGATGTTACTGAATCTGGAGACGATCTTGGTGGTGACATGCACAATAGAACACAATGGGATGATGATTGTCCATGGAGTGAGTGGTATTCTGCTGAAGACCCTGTAAAAGGGTTTGAGTTGGTTGCCTTGTGGTCTGAAAAGGTGGTCGAGAGCTCCCTGGAGATGGCTGAACTGGAAAATTCTTCACCCCATGAGGCTCAAAAATGGATATTATCTCCTAATATGTCTTCAACTTTAACTGATTCTTCCATAGGAAACAGAATTGGATTTGCTAGCCAGCTGTGCCTTTTGGTTGATGCATTGAACAAGTCGTTTGAGGCTCAGTTTATGGAAGATTTCGTGTCAGTTGAAAACCCAGGTTCTGATAATTTGAACTCCTCCATGGTTATACCTCCTCCTACAGTTATTGATCGTGTGCTCAAGGAACTCTTTCATGATGGTGCACAATTCCCCAGTTTTGCCTCTGGTGAGCACAAGACTTCTCGAATAAAGGCTGCACCTCTGGAATCCCTTTTTGCACAGTTTTGCCTGCATTCTCTTTGGTTTGGAAACTGCAATATACGTGCTATTTCTGTTATCTGGATAGAGTTTGTTCGAGAAGTTCGGTGGTGTTGGGAAGAGTCACAGCCATTGCCCTTAATGTCAGCCTTTGGTTCAATTGATCTGTCCACTTGTATGATTTACCAGAAACTTCATATGCTTGCTATATGCATCGAGAGGAAGCGTCAATTGAATGAAGAATTTCAAGATTGTGTTGGAAGCATGGATCATTCATCTCCTAGTATTGAGGAAGATGGTCTGGATGAGGGGTCAGAGGACTCATGTATTATGCAAACACCTGGTGAAAACCTTGATGGGAAACGAGACAGCCCTGCAATTCCAGATGATTTGCAAGACTCTAAACAGAGTGTATCAAGTCTTGGTGCTAGGCCTGAACATGCTGCAGTGTCTGCTGATCTAAAACCCTCAGATTGTATCAGAAGGGGTTCAGCTGGTGAGGCAGGTATGATGCTTCTGAAATCAAAACAGAGAATGCATGCACCATTCACGCAGGAGGCACCACTCATGACAGAAGACATGCATGAAGAACGGCTCCAGGCCGTGGAAGCCTTTGGTGACTCACTTAACTTTTCTGCTTTTTTGGAGAGAGAGATCTTAGCTTCAGACATGTCAGCATTCAAAGCAGCAAATCCAGACGCTGTTTTTGAAGATTTTATTCGCTGGCATTCTCCTGGAGATTGGGAGAGTGATGTTACAAAAGAGAGCGGATCATCCAATAATCCTGCAACAGAGGGTTCAAAAGATGACTGGCCCCCTCGAGGGCGGCTGTCAAAGAGAATGTCTGAGAGTGGGAATTTGTGGCGAAAGATTTGGAATGACGCACCTGCTTTGCCAGCTTCTGAGCAGAAGCCGCTAATGGATCCAAATAGAGAGGGAGAAAAGAGTCTTCATTACCTGGAAACCTTACGACCACATCAGTTGCTCGAGCAAATGATATGTACTGCCTTCAGCGCGGCAGCAGATACTTTGAATCAGACTCATTTTGGAGGCTTGAAGCAGATGACAACCAAACTCGATCAACTTTACCTTACTATGACATCTGCATTGAGGCCTTTGCAAGCAAATCGGCTATCTGCTGACACTGATACTATTGAAGACATAAAACGGCTGTGTGGTGTTTTTGAACATGTTGAGAAGCTACTCACTATTGCAGCTTCTCTTCATCGCAAGTTCTTGCACGCCCCACGCCTCTCTGAAGCAATATTCCGTGACTGCTGCAACTTTTATTTTCCAAGGATGGGAACAAGCTCCTCAGGCGACAATACTCCAAAGGAGTTTGAGAAGCAGCAAATAGTAACGATGAACGAAAGACCGGTGGTGTCAAATATGTTTACGCCTCCCACTGCTAACCAGTCATGGCGAAAAGTTTTGAGCTTGGGCAATCTTCTCAACGGCCATGAACCCGTCTTGAGAGAGATCATCTTTTCCAAGCGTGATAAAGTGAGCGGAAATCACTATGCTGCCCGTACTCCAAATGCTTATCAAGATGAACTAGAAACATATAGAATGTACATATGTGGAACCTCAAATGACCTCCGTATAGCACTTTCTGTTGTTTCTTGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003674 GO:0003824 GO:0004807 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006066 GO:0006071 GO:0006081 GO:0006082 GO:0006090 GO:0006091 GO:0006094 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006642 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0016043 GO:0016051 GO:0016052 GO:0016053 GO:0016310 GO:0016853 GO:0016860 GO:0016861 GO:0017144 GO:0018130 GO:0019318 GO:0019319 GO:0019359 GO:0019362 GO:0019363 GO:0019400 GO:0019405 GO:0019438 GO:0019439 GO:0019563 GO:0019637 GO:0019682 GO:0019693 GO:0019751 GO:0019752 GO:0022622 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042866 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044262 GO:0044270 GO:0044271 GO:0044275 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046164 GO:0046166 GO:0046174 GO:0046184 GO:0046364 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046486 GO:0046496 GO:0046700 GO:0046939 GO:0048046 GO:0048364 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0071840 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080022 GO:0090407 GO:0099402 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901615 GO:1901616
KEGG Pathways
Metabolic & Signaling
ko00010 ko00051 ko00562 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00051 map00562 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TIM

Protein Analysis

955

Amino Acids

107.47

Weight (kDa)

4.9

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rab3-GTPase_cat PF13890 573 - 733 2.9e-54 Rab3 GTPase-activating protein catalytic subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AarI CACCTGC 1 cut(s) 2131
AbsI CCTCGAGG 1 cut(s) 2055
Acc36I ACCTGC 2 cut(s) 1730, 2131
AccB1I GGYRCC 1 cut(s) 1795
AccB7I CCANNNNNTGG 1 cut(s) 1840
AccBSI CCGCTC 2 cut(s) 2004, 2745
AccII CGCG 1 cut(s) 2252
AclWI GGATC 8 cut(s) 283, 302, 315, 690, 1512, 2014, 2153, 2166
AcoI YGGCCR 1 cut(s) 2692
AcsI RAATTY 4 cut(s) 623, 916, 1478, 2092
AcuI CTGAAG 4 cut(s) 852, 1884, 2230, 2514
AdeI CACNNNGTG 2 cut(s) 374, 1580
AfaI GTAC 4 cut(s) 723, 2239, 2767, 2810
AfiI CCNNNNNNNGG 7 cut(s) 108, 845, 901, 1840, 2057, 2058, 2537
AflIII ACRYGT 2 cut(s) 1905, 2425
AgeI ACCGGT 1 cut(s) 2611
AjnI CCWGG 7 cut(s) 567, 894, 1093, 1576, 1833, 1969, 2193
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
Alw21I GWGCWC 4 cut(s) 893, 1158, 1183, 1212
Alw26I GTCTC 2 cut(s) 750, 1596
Alw44I GTGCAC 1 cut(s) 1179
AlwI GGATC 8 cut(s) 283, 302, 315, 690, 1512, 2014, 2153, 2166
AlwNI CAGNNNCTG 4 cut(s) 1100, 1688, 1937, 2138
Ama87I CYCGRG 2 cut(s) 2055, 2222
AoxI GGCC 6 cut(s) 461, 1667, 1836, 2048, 2348, 2692
ApaLI GTGCAC 1 cut(s) 1179
ApeKI GCWGC 8 cut(s) 1232, 1679, 1922, 2255, 2450, 2514, 2584, 2759
ApoI RAATTY 4 cut(s) 623, 916, 1478, 2092
ArsI GACNNNNNNTTYG 4 cut(s) 1925, 1957, 2063, 2095
AsiGI ACCGGT 1 cut(s) 2611
Asp700I GAANNNNTTC 3 cut(s) 1167, 1479, 1723
AspLEI GCGC 1 cut(s) 2252
AspS9I GGNCC 3 cut(s) 164, 462, 2049
AsuC2I CCSGG 1 cut(s) 476
AsuHPI GGTGA 6 cut(s) 782, 915, 1217, 1592, 1745, 1865
AsuNHI GCTAGC 2 cut(s) 407, 1010
AvaI CYCGRG 2 cut(s) 2055, 2222
AvaII GGWCC 1 cut(s) 164
AxyI CCTNAGG 2 cut(s) 402, 2551
BaeGI GKGCMC 1 cut(s) 1183
BamHI GGATCC 2 cut(s) 307, 2158
BanI GGYRCC 1 cut(s) 1795
BanII GRGCYC 1 cut(s) 893
BarI GAAGNNNNNNTAC 2 cut(s) 674, 706
BbsI GAAGAC 5 cut(s) 840, 957, 1818, 2177, 2400
Bbv12I GWGCWC 4 cut(s) 893, 1158, 1183, 1212
BbvI GCAGC 8 cut(s) 1219, 1666, 1934, 2267, 2462, 2501, 2596, 2746
BccI CCATC 6 cut(s) 13, 895, 1169, 1526, 1586, 2530
BceAI ACGGC 4 cut(s) 1823, 1844, 2420, 2707
BcgI CGANNNNNNTGC 2 cut(s) 2345, 2379
BciT130I CCWGG 7 cut(s) 569, 896, 1095, 1578, 1835, 1971, 2195
BclI TGATCA 1 cut(s) 553
BcnI CCSGG 1 cut(s) 476
BcoDI GTCTC 2 cut(s) 750, 1596
BfaI CTAG 7 cut(s) 408, 492, 537, 1011, 1518, 1665, 2792
BfmI CTRYAG 3 cut(s) 691, 1137, 1680
BfuAI ACCTGC 2 cut(s) 1730, 2131
BglII AGATCT 1 cut(s) 1890
Bme1390I CCNGG 8 cut(s) 476, 569, 896, 1095, 1578, 1835, 1971, 2195
Bme18I GGWCC 1 cut(s) 164
BmeT110I CYCGRG 2 cut(s) 2055, 2222
BmgT120I GGNCC 3 cut(s) 164, 462, 2049
BmiI GGNNCC 7 cut(s) 309, 573, 1797, 1832, 2051, 2160, 2821
BmrFI CCNGG 8 cut(s) 476, 569, 896, 1095, 1578, 1835, 1971, 2195
BmrI ACTGGG 1 cut(s) 1185
BmsI GCATC 6 cut(s) 178, 664, 724, 1024, 1458, 1737
BmtI GCTAGC 2 cut(s) 411, 1014
BmuI ACTGGG 1 cut(s) 1185
BpiI GAAGAC 5 cut(s) 840, 957, 1818, 2177, 2400
BpmI CTGGAG 4 cut(s) 774, 917, 1817, 1992
BpuEI CTTGAG 2 cut(s) 1142, 2728
BpuMI CCSGG 1 cut(s) 476
BsaAI YACGTR 1 cut(s) 1301
BsaBI GATNNNNATC 1 cut(s) 306
BsaJI CCNNGG 6 cut(s) 809, 894, 1093, 1119, 1839, 2531
BsaWI WCCGGW 1 cut(s) 2611
Bsc4I CCNNNNNNNGG 7 cut(s) 108, 845, 901, 1840, 2057, 2058, 2537
Bse118I RCCGGY 1 cut(s) 2611
Bse1I ACTGG 5 cut(s) 575, 915, 1191, 2051, 2650
Bse21I CCTNAGG 2 cut(s) 402, 2551
Bse3DI GCAATG 2 cut(s) 155, 1367
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 7 cut(s) 569, 896, 1095, 1578, 1835, 1971, 2195
BseDI CCNNGG 6 cut(s) 809, 894, 1093, 1119, 1839, 2531
BseGI GGATG 5 cut(s) 193, 802, 1546, 2009, 2541
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 7 cut(s) 108, 845, 901, 1840, 2057, 2058, 2537
BseMI GCAATG 2 cut(s) 155, 1367
BseMII CTCAG 6 cut(s) 393, 1073, 1719, 2073, 2130, 2565
BseNI ACTGG 5 cut(s) 575, 915, 1191, 2051, 2650
BseRI GAGGAG 6 cut(s) 68, 71, 221, 1105, 1122, 2539
BseSI GKGCMC 1 cut(s) 1183
BseXI GCAGC 8 cut(s) 1219, 1666, 1934, 2267, 2462, 2501, 2596, 2746
BsgI GTGCAG 2 cut(s) 444, 1218
Bsh1236I CGCG 1 cut(s) 2252
BshFI GGCC 6 cut(s) 463, 1669, 1838, 2050, 2350, 2694
BshNI GGYRCC 1 cut(s) 1795
BshTI ACCGGT 1 cut(s) 2611
BsiHKAI GWGCWC 4 cut(s) 893, 1158, 1183, 1212
BsiHKCI CYCGRG 2 cut(s) 2055, 2222
BsiSI CCGG 2 cut(s) 476, 2612
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 7 cut(s) 108, 845, 901, 1840, 2057, 2058, 2537
BsmAI GTCTC 2 cut(s) 750, 1596
BsmBI CGTCTC 1 cut(s) 750
BsmFI GGGAC 1 cut(s) 458
BsmI GAATGC 5 cut(s) 510, 1270, 1776, 1913, 1963
BsnI GGCC 6 cut(s) 463, 1669, 1838, 2050, 2350, 2694
BsoBI CYCGRG 2 cut(s) 2055, 2222
Bsp1286I GDGCHC 4 cut(s) 893, 1158, 1183, 1212
Bsp1407I TGTACA 2 cut(s) 721, 2808
Bsp19I CCATGG 2 cut(s) 809, 1119
BspANI GGCC 6 cut(s) 463, 1669, 1838, 2050, 2350, 2694
BspCNI CTCAG 6 cut(s) 394, 1072, 1718, 2074, 2131, 2564
BspFNI CGCG 1 cut(s) 2252
BspHI TCATGA 2 cut(s) 1171, 1803
BspLI GGNNCC 7 cut(s) 309, 573, 1797, 1832, 2051, 2160, 2821
BspMAI CTGCAG 1 cut(s) 1684
BspMI ACCTGC 2 cut(s) 1730, 2131
BspOI GCTAGC 2 cut(s) 411, 1014
BspPI GGATC 8 cut(s) 283, 302, 315, 690, 1512, 2014, 2153, 2166
BspT107I GGYRCC 1 cut(s) 1795
BsrBI CCGCTC 2 cut(s) 2004, 2745
BsrDI GCAATG 2 cut(s) 155, 1367
BsrFI RCCGGY 1 cut(s) 2611
BsrGI TGTACA 2 cut(s) 721, 2808
BsrI ACTGG 5 cut(s) 575, 915, 1191, 2051, 2650
BssAI RCCGGY 1 cut(s) 2611
BssECI CCNNGG 6 cut(s) 809, 894, 1093, 1119, 1839, 2531
BssT1I CCWWGG 3 cut(s) 809, 1119, 2531
Bst2UI CCWGG 7 cut(s) 569, 896, 1095, 1578, 1835, 1971, 2195
Bst4CI ACNGT 5 cut(s) 164, 290, 529, 1141, 1260
Bst6I CTCTTC 4 cut(s) 109, 665, 1350, 2463
BstAPI GCANNNNNTGC 2 cut(s) 325, 1688
BstAUI TGTACA 2 cut(s) 721, 2808
BstBAI YACGTR 1 cut(s) 1301
BstDEI CTNAG 7 cut(s) 402, 1059, 1705, 1894, 2082, 2139, 2551
BstDSI CCRYGG 3 cut(s) 809, 1119, 1839
BstENI CCTNNNNNAGG 1 cut(s) 843
BstF5I GGATG 5 cut(s) 193, 802, 1546, 2009, 2541
BstFNI CGCG 1 cut(s) 2252
BstHHI GCGC 1 cut(s) 2252
BstMAI GTCTC 2 cut(s) 750, 1596
BstNI CCWGG 7 cut(s) 569, 896, 1095, 1578, 1835, 1971, 2195
BstNSI RCATGY 7 cut(s) 485, 778, 1679, 1778, 1819, 1909, 2429
BstSCI CCNGG 8 cut(s) 474, 567, 894, 1093, 1576, 1833, 1969, 2193
BstSFI CTRYAG 3 cut(s) 691, 1137, 1680
BstSLI GKGCMC 1 cut(s) 1183
BstUI CGCG 1 cut(s) 2252
BstV1I GCAGC 8 cut(s) 1219, 1666, 1934, 2267, 2462, 2501, 2596, 2746
BstV2I GAAGAC 5 cut(s) 840, 957, 1818, 2177, 2400
BstX2I RGATCY 5 cut(s) 275, 307, 695, 1890, 2158
BstXI CCANNNNNNTGG 2 cut(s) 19, 385
BstYI RGATCY 5 cut(s) 275, 307, 695, 1890, 2158
Bsu36I CCTNAGG 2 cut(s) 402, 2551
BsuRI GGCC 6 cut(s) 463, 1669, 1838, 2050, 2350, 2694
BtgI CCRYGG 3 cut(s) 809, 1119, 1839
BtgZI GCGATG 1 cut(s) 2447
BtsCI GGATG 5 cut(s) 193, 802, 1546, 2009, 2541
BtsI GCAGTG 3 cut(s) 249, 1689, 2640
BtsIMutI CAGTG 4 cut(s) 249, 1689, 2379, 2640
BveI ACCTGC 2 cut(s) 1730, 2131
CaiI CAGNNNCTG 4 cut(s) 1100, 1688, 1937, 2138
CciI TCATGA 2 cut(s) 1171, 1803
CfoI GCGC 1 cut(s) 2252
Cfr10I RCCGGY 1 cut(s) 2611
Cfr13I GGNCC 3 cut(s) 164, 462, 2049
CpoI CGGWCCG 1 cut(s) 164
CseI GACGC 4 cut(s) 404, 1451, 1943, 2126
CsiI ACCWGGT 1 cut(s) 1576
Csp6I GTAC 4 cut(s) 722, 2238, 2766, 2809
CspAI ACCGGT 1 cut(s) 2611
CspCI CAANNNNNGTGG 2 cut(s) 2199, 2234
CspI CGGWCCG 1 cut(s) 164
CviQI GTAC 4 cut(s) 722, 2238, 2766, 2809
DdeI CTNAG 7 cut(s) 402, 1059, 1705, 1894, 2082, 2139, 2551
DraIII CACNNNGTG 2 cut(s) 374, 1580
EaeI YGGCCR 1 cut(s) 2692
Eam1104I CTCTTC 4 cut(s) 109, 665, 1350, 2463
EarI CTCTTC 4 cut(s) 109, 665, 1350, 2463
EciI GGCGGA 1 cut(s) 693
Ecl136II GAGCTC 1 cut(s) 891
Eco130I CCWWGG 3 cut(s) 809, 1119, 2531
Eco147I AGGCCT 2 cut(s) 1669, 2350
Eco24I GRGCYC 1 cut(s) 893
Eco47I GGWCC 1 cut(s) 164
Eco53kI GAGCTC 1 cut(s) 891
Eco57I CTGAAG 4 cut(s) 852, 1884, 2230, 2514
Eco81I CCTNAGG 2 cut(s) 402, 2551
Eco88I CYCGRG 2 cut(s) 2055, 2222
EcoICRI GAGCTC 1 cut(s) 891
EcoNI CCTNNNNNAGG 1 cut(s) 843
EcoRII CCWGG 7 cut(s) 567, 894, 1093, 1576, 1833, 1969, 2193
EcoT14I CCWWGG 3 cut(s) 809, 1119, 2531
EcoT22I ATGCAT 6 cut(s) 591, 657, 1039, 1451, 1776, 1821
EcoT38I GRGCYC 1 cut(s) 893
ErhI CCWWGG 3 cut(s) 809, 1119, 2531
Esp3I CGTCTC 1 cut(s) 750
FalI AAGNNNNNCTT 2 cut(s) 1151, 1183
FaqI GGGAC 1 cut(s) 458
FauI CCCGC 1 cut(s) 472
FauNDI CATATG 2 cut(s) 1434, 2813
FbaI TGATCA 1 cut(s) 553
FokI GGATG 5 cut(s) 200, 809, 1553, 1996, 2548
FriOI GRGCYC 1 cut(s) 893
FspBI CTAG 7 cut(s) 408, 492, 537, 1011, 1518, 1665, 2792
GlaI GCGC 1 cut(s) 2251
GsuI CTGGAG 4 cut(s) 774, 917, 1817, 1992
HaeIII GGCC 6 cut(s) 463, 1669, 1838, 2050, 2350, 2694
HapII CCGG 2 cut(s) 476, 2612
HgaI GACGC 4 cut(s) 404, 1451, 1943, 2126
HhaI GCGC 1 cut(s) 2252
Hin6I GCGC 1 cut(s) 2250
HinP1I GCGC 1 cut(s) 2250
HindIII AAGCTT 2 cut(s) 413, 498
HpaII CCGG 2 cut(s) 476, 2612
HphI GGTGA 6 cut(s) 782, 915, 1217, 1592, 1745, 1865
Hpy166II GTNNAC 3 cut(s) 1181, 1407, 2631
Hpy8I GTNNAC 3 cut(s) 1181, 1407, 2631
Hpy99I CGWCG 3 cut(s) 68, 71, 164
HpyAV CCTTC 4 cut(s) 590, 710, 1713, 2254
HpyCH4III ACNGT 5 cut(s) 164, 290, 529, 1141, 1260
HpyCH4IV ACGT 1 cut(s) 1300
HpyF3I CTNAG 7 cut(s) 402, 1059, 1705, 1894, 2082, 2139, 2551
HpySE526I ACGT 1 cut(s) 1300
HspAI GCGC 1 cut(s) 2250
Ksp22I TGATCA 1 cut(s) 553
LmnI GCTCC 5 cut(s) 370, 403, 896, 1836, 2552
Lsp1109I GCAGC 8 cut(s) 1219, 1666, 1934, 2267, 2462, 2501, 2596, 2746
LweI GCATC 6 cut(s) 178, 664, 724, 1024, 1458, 1737
MabI ACCWGGT 1 cut(s) 1576
MaeI CTAG 7 cut(s) 408, 492, 537, 1011, 1518, 1665, 2792
MaeII ACGT 1 cut(s) 1300
MaeIII GTNAC 8 cut(s) 251, 742, 770, 1359, 1853, 1990, 2507, 2593
MbiI CCGCTC 2 cut(s) 2004, 2745
MfeI CAATTG 3 cut(s) 432, 1395, 1466
MflI RGATCY 5 cut(s) 275, 307, 695, 1890, 2158
MhlI GDGCHC 4 cut(s) 893, 1158, 1183, 1212
MlyI GAGTC 6 cut(s) 1367, 1550, 1628, 1850, 2191, 2269
MmeI TCCRAC 1 cut(s) 1474
Mph1103I ATGCAT 6 cut(s) 591, 657, 1039, 1451, 1776, 1821
MroXI GAANNNNTTC 3 cut(s) 1167, 1479, 1723
MseI TTAA 6 cut(s) 222, 419, 974, 1376, 1863, 2866
MslI CAYNNNNRTG 3 cut(s) 84, 1176, 1412
MspA1I CMGCKG 3 cut(s) 381, 1018, 1730
MspI CCGG 2 cut(s) 476, 2612
MspR9I CCNGG 8 cut(s) 476, 569, 896, 1095, 1578, 1835, 1971, 2195
MunI CAATTG 3 cut(s) 432, 1395, 1466
Mva1269I GAATGC 5 cut(s) 510, 1270, 1776, 1913, 1963
MvaI CCWGG 7 cut(s) 569, 896, 1095, 1578, 1835, 1971, 2195
MvnI CGCG 1 cut(s) 2252
NciI CCSGG 1 cut(s) 476
NcoI CCATGG 2 cut(s) 809, 1119
NdeI CATATG 2 cut(s) 1434, 2813
NheI GCTAGC 2 cut(s) 407, 1010
NlaIV GGNNCC 7 cut(s) 309, 573, 1797, 1832, 2051, 2160, 2821
NmuCI GTSAC 4 cut(s) 770, 1359, 1853, 2507
NsiI ATGCAT 6 cut(s) 591, 657, 1039, 1451, 1776, 1821
NspI RCATGY 7 cut(s) 485, 778, 1679, 1778, 1819, 1909, 2429
PaeI GCATGC 1 cut(s) 1778
PaeR7I CTCGAG 2 cut(s) 2055, 2222
PagI TCATGA 2 cut(s) 1171, 1803
PaqCI CACCTGC 1 cut(s) 2131
PceI AGGCCT 2 cut(s) 1669, 2350
PciI ACATGT 2 cut(s) 1905, 2425
PctI GAATGC 5 cut(s) 510, 1270, 1776, 1913, 1963
PdmI GAANNNNTTC 3 cut(s) 1167, 1479, 1723
PfeI GAWTC 5 cut(s) 23, 749, 980, 1244, 2269
PflMI CCANNNNNTGG 1 cut(s) 1840
PfoI TCCNGGA 1 cut(s) 1969
PinAI ACCGGT 1 cut(s) 2611
PleI GAGTC 6 cut(s) 1366, 1550, 1628, 1850, 2190, 2269
PpsI GAGTC 6 cut(s) 1366, 1550, 1628, 1850, 2190, 2269
Ppu21I YACGTR 1 cut(s) 1301
PscI ACATGT 2 cut(s) 1905, 2425
PsiI TTATAA 1 cut(s) 216
Psp124BI GAGCTC 1 cut(s) 893
Psp6I CCWGG 7 cut(s) 567, 894, 1093, 1576, 1833, 1969, 2193
PspGI CCWGG 7 cut(s) 567, 894, 1093, 1576, 1833, 1969, 2193
PspN4I GGNNCC 7 cut(s) 309, 573, 1797, 1832, 2051, 2160, 2821
PspPI GGNCC 3 cut(s) 164, 462, 2049
PspXI VCTCGAGB 2 cut(s) 2055, 2222
PstI CTGCAG 1 cut(s) 1684
PstNI CAGNNNCTG 4 cut(s) 1100, 1688, 1937, 2138
PsuI RGATCY 5 cut(s) 275, 307, 695, 1890, 2158
PvuII CAGCTG 2 cut(s) 1018, 1730
RsaI GTAC 4 cut(s) 723, 2239, 2767, 2810
RsaNI GTAC 4 cut(s) 722, 2238, 2766, 2809
RseI CAYNNNNRTG 3 cut(s) 84, 1176, 1412
Rsr2I CGGWCCG 1 cut(s) 164
RsrII CGGWCCG 1 cut(s) 164
SacI GAGCTC 1 cut(s) 893
SaqAI TTAA 6 cut(s) 222, 419, 974, 1376, 1863, 2866
Sau96I GGNCC 3 cut(s) 164, 462, 2049
SchI GAGTC 6 cut(s) 1367, 1550, 1628, 1850, 2191, 2269
ScrFI CCNGG 8 cut(s) 476, 569, 896, 1095, 1578, 1835, 1971, 2195
SduI GDGCHC 4 cut(s) 893, 1158, 1183, 1212
SexAI ACCWGGT 1 cut(s) 1576
SfaNI GCATC 6 cut(s) 178, 664, 724, 1024, 1458, 1737
SfcI CTRYAG 3 cut(s) 691, 1137, 1680
Sfr274I CTCGAG 2 cut(s) 2055, 2222
SinI GGWCC 1 cut(s) 164
SlaI CTCGAG 2 cut(s) 2055, 2222
SmiMI CAYNNNNRTG 3 cut(s) 84, 1176, 1412
SmlI CTYRAG 4 cut(s) 1157, 2055, 2222, 2707
SmoI CTYRAG 4 cut(s) 1157, 2055, 2222, 2707
SphI GCATGC 1 cut(s) 1778
SseBI AGGCCT 2 cut(s) 1669, 2350
SspI AATATT 1 cut(s) 2502
SspMI CTAG 7 cut(s) 408, 492, 537, 1011, 1518, 1665, 2792
SstI GAGCTC 1 cut(s) 893
StuI AGGCCT 2 cut(s) 1669, 2350
StyD4I CCNGG 8 cut(s) 474, 567, 894, 1093, 1576, 1833, 1969, 2193
StyI CCWWGG 3 cut(s) 809, 1119, 2531
TaaI ACNGT 5 cut(s) 164, 290, 529, 1141, 1260
TaiI ACGT 1 cut(s) 1303
TaqI TCGA 7 cut(s) 885, 1222, 1333, 1452, 2056, 2223, 2313
TatI WGTACW 3 cut(s) 721, 2237, 2808
TauI GCSGC 3 cut(s) 2065, 2152, 2255
TfiI GAWTC 5 cut(s) 23, 749, 980, 1244, 2269
Tru1I TTAA 6 cut(s) 222, 419, 974, 1376, 1863, 2866
Tru9I TTAA 6 cut(s) 222, 419, 974, 1376, 1863, 2866
TscAI CASTG 4 cut(s) 249, 1689, 2386, 2647
TseFI GTSAC 4 cut(s) 770, 1359, 1853, 2507
TseI GCWGC 8 cut(s) 1232, 1679, 1922, 2255, 2450, 2514, 2584, 2759
Tsp45I GTSAC 4 cut(s) 770, 1359, 1853, 2507
TspGWI ACGGA 2 cut(s) 2495, 2825
TspRI CASTG 4 cut(s) 249, 1689, 2386, 2647
Van91I CCANNNNNTGG 1 cut(s) 1840
VneI GTGCAC 1 cut(s) 1179
VpaK11BI GGWCC 1 cut(s) 164
XagI CCTNNNNNAGG 1 cut(s) 843
XapI RAATTY 4 cut(s) 623, 916, 1478, 2092
XceI RCATGY 7 cut(s) 485, 778, 1679, 1778, 1819, 1909, 2429
XcmI CCANNNNNNNNNTGG 1 cut(s) 816
XhoI CTCGAG 2 cut(s) 2055, 2222
XmnI GAANNNNTTC 3 cut(s) 1167, 1479, 1723
XspI CTAG 7 cut(s) 408, 492, 537, 1011, 1518, 1665, 2792
Zsp2I ATGCAT 6 cut(s) 591, 657, 1039, 1451, 1776, 1821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.