Rw1G015790

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000234
Physical Location & Seq
Reverse (-)
35186834 .. 35187556
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G015790.1

Sequence Viewer

Length: 723 bp
ATGTTGAGCCGCCAGAACAAAATGAAACGACGAAGGGATGCTCTAGTGTTCATAGGCATGCCCCAAGAAATCTTGTTTGAAATCCTTGCAAGATTACCTGTGAAATCTCTGTTAAGGTTCCGATGTGTTTGCAAATATTGGAAGACTCTGATTAGTACCCCAGATTTCATTAATGCCCATCTAGAGAGGACTTCCATGAAAAGTACTCATGATCGTTTGCTTATCCAAACTAGGGAGCGTAGGATGGATAGAAAGTGCTTGTCACTCTTCTGTGCTGATACATTTGCCAAGATTTCGGAGATAGAGCTTCCTATGATCAAAATTGAATCACATTTCCGCGTTATGGTGGGTTCCTACAATGGAGTGGTTTGCTTATATGATAGTGATTTTGAAACTTATCTATGGAATCCATCAATCAGAAAATTCAAGAGACTTCCCCAGGTCCTCAATGATAGAAGGGGGCAATTAGCTCACTTTGCTATCTCGTTCGGGTTCCATCCTGAAGGTGATGACTATAAAGTTGTGAGAATTTTGACATTTGAACGTCGTTATATGATTGAGGTTGAGGTTTACAGCCATAGGTTGGAGTCTTGGAGAAGAATTAATGCAGTTCCCCCTAATTCACATGAACTGTATATTCAGGGAGAAGGCACATGTGTGAATGGAGTTGTGTACTGGGTCATAAAAGAGTCTTTCTCAAAGCTGCTCATAATGTTTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

28.55

Weight (kDa)

9.62

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 19 - 56 4.2e-12 F-box domain
F-box-like PF12937 20 - 54 1.2e-09 F-box-like
FBA_3 PF08268 106 - 234 9.7e-15 F-box associated beta propeller domain
FBA_1 PF07734 116 - 237 3.6e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 583
AccII CGCG 1 cut(s) 339
AciI CCGC 2 cut(s) 10, 337
AcsI RAATTY 2 cut(s) 422, 528
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 3 cut(s) 157, 205, 674
AfiI CCNNNNNNNGG 3 cut(s) 232, 343, 583
AflIII ACRYGT 1 cut(s) 653
AgsI TTSAA 5 cut(s) 80, 326, 392, 427, 542
AjnI CCWGG 1 cut(s) 438
AleI CACNNNNGTG 1 cut(s) 656
AluBI AGCT 3 cut(s) 307, 470, 703
AluI AGCT 3 cut(s) 307, 470, 703
Alw26I GTCTC 1 cut(s) 424
ApeKI GCWGC 1 cut(s) 703
ApoI RAATTY 2 cut(s) 422, 528
AseI ATTAAT 2 cut(s) 171, 603
AspS9I GGNCC 1 cut(s) 442
AsuHPI GGTGA 1 cut(s) 518
AvaII GGWCC 1 cut(s) 442
BbsI GAAGAC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 690
BccI CCATC 4 cut(s) 186, 238, 418, 504
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BciT130I CCWGG 1 cut(s) 440
BclI TGATCA 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 424
BfaI CTAG 3 cut(s) 44, 182, 231
BisI GCNGC 2 cut(s) 10, 704
BlsI GCNGC 2 cut(s) 11, 705
BmcAI AGTACT 1 cut(s) 205
Bme1390I CCNGG 1 cut(s) 440
Bme18I GGWCC 1 cut(s) 442
BmgT120I GGNCC 1 cut(s) 442
BmiI GGNNCC 3 cut(s) 119, 352, 494
BmrFI CCNGG 1 cut(s) 440
BmrI ACTGGG 1 cut(s) 685
BmsI GCATC 1 cut(s) 28
BmuI ACTGGG 1 cut(s) 685
BpiI GAAGAC 1 cut(s) 149
BplI GAGNNNNNCTC 2 cut(s) 680, 712
BsaJI CCNNGG 1 cut(s) 438
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 343, 583
Bse1I ACTGG 1 cut(s) 680
BseBI CCWGG 1 cut(s) 440
BseDI CCNNGG 1 cut(s) 438
BseGI GGATG 3 cut(s) 43, 249, 496
BseLI CCNNNNNNNGG 3 cut(s) 232, 343, 583
BseNI ACTGG 1 cut(s) 680
BseXI GCAGC 1 cut(s) 690
Bsh1236I CGCG 1 cut(s) 339
BslI CCNNNNNNNGG 3 cut(s) 232, 343, 583
BsmAI GTCTC 1 cut(s) 424
Bsp143I GATC 2 cut(s) 211, 315
BspACI CCGC 2 cut(s) 10, 337
BspFNI CGCG 1 cut(s) 339
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 3 cut(s) 119, 352, 494
BsrI ACTGG 1 cut(s) 680
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 2 cut(s) 211, 315
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 1 cut(s) 633
Bst6I CTCTTC 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 59
BstF5I GGATG 3 cut(s) 43, 249, 496
BstFNI CGCG 1 cut(s) 339
BstKTI GATC 2 cut(s) 214, 318
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 2 cut(s) 211, 315
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNI CCWGG 1 cut(s) 440
BstNSI RCATGY 2 cut(s) 61, 657
BstSCI CCNGG 1 cut(s) 438
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 1 cut(s) 690
BstV2I GAAGAC 1 cut(s) 149
BtsCI GGATG 3 cut(s) 43, 249, 496
Cac8I GCNNGC 1 cut(s) 59
CciI TCATGA 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 442
Csp6I GTAC 3 cut(s) 156, 204, 673
CviAII CATG 5 cut(s) 58, 196, 209, 626, 654
CviJI RGCY 5 cut(s) 9, 307, 470, 576, 703
CviKI_1 RGCY 5 cut(s) 9, 307, 470, 576, 703
CviQI GTAC 3 cut(s) 156, 204, 673
DpnI GATC 2 cut(s) 213, 317
DpnII GATC 2 cut(s) 211, 315
DraI TTTAAA 1 cut(s) 718
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 522
EcoO109I RGGNCCY 1 cut(s) 442
EcoRII CCWGG 1 cut(s) 438
FaeI CATG 5 cut(s) 61, 199, 212, 629, 657
FatI CATG 5 cut(s) 57, 195, 208, 625, 653
FbaI TGATCA 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 10, 704
FokI GGATG 3 cut(s) 50, 256, 483
Fsp4HI GCNGC 2 cut(s) 10, 704
FspBI CTAG 3 cut(s) 44, 182, 231
GluI GCNGC 2 cut(s) 10, 704
Hin1II CATG 5 cut(s) 61, 199, 212, 629, 657
HinfI GANTC 5 cut(s) 145, 326, 406, 587, 689
HphI GGTGA 1 cut(s) 518
Hpy166II GTNNAC 2 cut(s) 571, 673
Hpy188I TCNGA 4 cut(s) 122, 150, 298, 419
Hpy188III TCNNGA 4 cut(s) 182, 209, 427, 500
Hpy8I GTNNAC 2 cut(s) 571, 673
Hpy99I CGWCG 2 cut(s) 33, 549
HpyAV CCTTC 4 cut(s) 27, 450, 497, 641
HpyCH4III ACNGT 1 cut(s) 633
HpyCH4IV ACGT 1 cut(s) 544
HpyCH4V TGCA 3 cut(s) 89, 132, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 5 cut(s) 61, 199, 212, 629, 657
Ksp22I TGATCA 1 cut(s) 315
Kzo9I GATC 2 cut(s) 211, 315
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 8 cut(s) 26, 111, 174, 425, 452, 513, 626, 661
Lsp1109I GCAGC 1 cut(s) 690
LweI GCATC 1 cut(s) 28
MaeI CTAG 3 cut(s) 44, 182, 231
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 1 cut(s) 261
MalI GATC 2 cut(s) 213, 317
MboI GATC 2 cut(s) 211, 315
MboII GAAGA 3 cut(s) 154, 259, 609
MluCI AATT 6 cut(s) 321, 422, 464, 528, 600, 619
MlyI GAGTC 3 cut(s) 139, 596, 698
MmeI TCCRAC 1 cut(s) 564
MnlI CCTC 4 cut(s) 180, 455, 553, 559
MseI TTAA 4 cut(s) 113, 171, 603, 717
MslI CAYNNNNRTG 2 cut(s) 56, 656
MspR9I CCNGG 1 cut(s) 440
MvaI CCWGG 1 cut(s) 440
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 476
NdeII GATC 2 cut(s) 211, 315
NlaIII CATG 5 cut(s) 61, 199, 212, 629, 657
NlaIV GGNNCC 3 cut(s) 119, 352, 494
NmuCI GTSAC 1 cut(s) 261
NspI RCATGY 2 cut(s) 61, 657
OliI CACNNNNGTG 1 cut(s) 656
PaeI GCATGC 1 cut(s) 61
PagI TCATGA 1 cut(s) 208
PciI ACATGT 1 cut(s) 653
PfeI GAWTC 2 cut(s) 326, 406
PflMI CCANNNNNTGG 1 cut(s) 583
PkrI GCNGC 2 cut(s) 11, 705
PleI GAGTC 3 cut(s) 139, 595, 697
PpsI GAGTC 3 cut(s) 139, 595, 697
PpuMI RGGWCCY 1 cut(s) 442
PscI ACATGT 1 cut(s) 653
PshBI ATTAAT 2 cut(s) 171, 603
Psp5II RGGWCCY 1 cut(s) 442
Psp6I CCWGG 1 cut(s) 438
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 3 cut(s) 119, 352, 494
PspPI GGNCC 1 cut(s) 442
PspPPI RGGWCCY 1 cut(s) 442
RsaI GTAC 3 cut(s) 157, 205, 674
RsaNI GTAC 3 cut(s) 156, 204, 673
RseI CAYNNNNRTG 2 cut(s) 56, 656
SaqAI TTAA 4 cut(s) 113, 171, 603, 717
SatI GCNGC 2 cut(s) 10, 704
Sau3AI GATC 2 cut(s) 211, 315
Sau96I GGNCC 1 cut(s) 442
ScaI AGTACT 1 cut(s) 205
SchI GAGTC 3 cut(s) 139, 596, 698
ScrFI CCNGG 1 cut(s) 440
SfaNI GCATC 1 cut(s) 28
SinI GGWCC 1 cut(s) 442
SmiMI CAYNNNNRTG 2 cut(s) 56, 656
SphI GCATGC 1 cut(s) 61
Sse9I AATT 6 cut(s) 321, 422, 464, 528, 600, 619
SsiI CCGC 2 cut(s) 10, 337
SspI AATATT 1 cut(s) 137
SspMI CTAG 3 cut(s) 44, 182, 231
StyD4I CCNGG 1 cut(s) 438
TaaI ACNGT 1 cut(s) 633
TaiI ACGT 1 cut(s) 547
TasI AATT 6 cut(s) 321, 422, 464, 528, 600, 619
TatI WGTACW 2 cut(s) 203, 672
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 2 cut(s) 326, 406
Tru1I TTAA 4 cut(s) 113, 171, 603, 717
Tru9I TTAA 4 cut(s) 113, 171, 603, 717
TseFI GTSAC 1 cut(s) 261
TseI GCWGC 1 cut(s) 703
Tsp45I GTSAC 1 cut(s) 261
TspDTI ATGAA 5 cut(s) 38, 40, 157, 212, 642
Van91I CCANNNNNTGG 1 cut(s) 583
VpaK11BI GGWCC 1 cut(s) 442
VspI ATTAAT 2 cut(s) 171, 603
XapI RAATTY 2 cut(s) 422, 528
XbaI TCTAGA 1 cut(s) 181
XceI RCATGY 2 cut(s) 61, 657
XspI CTAG 3 cut(s) 44, 182, 231
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.