Rh2DG461700

lipid metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000234
Physical Location & Seq
Reverse (-)
66674939 .. 66675841
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG461700.1

Sequence Viewer

Length: 447 bp
ATGGGGAGTCCTGGAGTTGAGGTTTATACCACCCTTGGTACAAACTCTTGGAAGAGCATTCGGGTAACCCCTCCTTGGTTAAACTTCAATCGCATTTACTCCACAGCTGCATTTTTAAAGGGAACAGCATATTGGACTGCTAAGGCAGGTTCAGAATATAAGATTGTAGCATTTGATGCGGGAAGTGAAGAATTTCAAGAACTGATTGTGCCAAAGAAAAATTCCTTCACGGCGCTGCTAGTGTGCGAGGAATCACTTTGCCTCTTTCAATACGAGTGGGAATGGCTGGAATGGTCAGGAGAATGGACCATTGACTCATGGATAATGAAAGAGCAGTCTTTGAACAAGGTGGATTCTAGTTCACTCGAGAAAAGCGGATGCTATTTTCCACTCAGCTCTAGCATAGATAATGAACTAGTGAACTACTCATTGCATATATGGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 Retrotran_gag_3 gag_pre-integrs rve zf-CCHC

Protein Analysis

148

Amino Acids

16.96

Weight (kDa)

4.68

Isoelectric Point (pI)

29.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 6 - 117 5.3e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 137
AciI CCGC 2 cut(s) 179, 375
AcsI RAATTY 2 cut(s) 191, 220
AfaI GTAC 1 cut(s) 40
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 4 cut(s) 88, 197, 269, 343
AhlI ACTAGT 1 cut(s) 415
AjnI CCWGG 1 cut(s) 10
AjuI GAANNNNNNNTTGG 4 cut(s) 115, 147, 205, 237
AluBI AGCT 2 cut(s) 107, 396
AluI AGCT 2 cut(s) 107, 396
Ama87I CYCGRG 1 cut(s) 365
ApeKI GCWGC 2 cut(s) 107, 235
ApoI RAATTY 2 cut(s) 191, 220
Asp700I GAANNNNTTC 1 cut(s) 192
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 306
AvaI CYCGRG 1 cut(s) 365
AvaII GGWCC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 94, 222
BceAI ACGGC 1 cut(s) 246
BciT130I CCWGG 1 cut(s) 12
BcuI ACTAGT 1 cut(s) 415
BfaI CTAG 4 cut(s) 239, 357, 399, 416
BfoI RGCGCY 1 cut(s) 236
BfuAI ACCTGC 1 cut(s) 137
BisI GCNGC 2 cut(s) 108, 236
BlsI GCNGC 2 cut(s) 109, 237
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 306
BmeT110I CYCGRG 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 306
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 2 cut(s) 166, 368
BpmI CTGGAG 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 141
BsaJI CCNNGG 2 cut(s) 34, 74
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse3DI GCAATG 1 cut(s) 428
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 34, 74
BseGI GGATG 1 cut(s) 383
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMI GCAATG 1 cut(s) 428
BseMII CTCAG 1 cut(s) 406
BseXI GCAGC 2 cut(s) 94, 222
BsiHKCI CYCGRG 1 cut(s) 365
BslI CCNNNNNNNGG 1 cut(s) 75
BsmI GAATGC 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 365
BspACI CCGC 2 cut(s) 179, 375
BspCNI CTCAG 1 cut(s) 405
BspMI ACCTGC 1 cut(s) 137
BspQI GCTCTTC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 428
BssECI CCNNGG 2 cut(s) 34, 74
BssT1I CCWWGG 2 cut(s) 34, 74
Bst2UI CCWGG 1 cut(s) 12
Bst6I CTCTTC 1 cut(s) 47
BstAPI GCANNNNNTGC 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 141, 392
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 1 cut(s) 383
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 1 cut(s) 235
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 1 cut(s) 12
BstPI GGTNACC 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 10
BstV1I GCAGC 2 cut(s) 94, 222
BtsCI GGATG 1 cut(s) 383
BveI ACCTGC 1 cut(s) 137
CfoI GCGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 306
Csp6I GTAC 1 cut(s) 39
CspCI CAANNNNNGTGG 2 cut(s) 257, 292
CviAII CATG 1 cut(s) 318
CviJI RGCY 3 cut(s) 107, 286, 396
CviKI_1 RGCY 3 cut(s) 107, 286, 396
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 2 cut(s) 141, 392
DraI TTTAAA 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco130I CCWWGG 2 cut(s) 34, 74
Eco47I GGWCC 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 365
Eco91I GGTNACC 1 cut(s) 64
EcoO65I GGTNACC 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 10
EcoT14I CCWWGG 2 cut(s) 34, 74
ErhI CCWWGG 2 cut(s) 34, 74
FaeI CATG 1 cut(s) 321
FaiI YATR 9 cut(s) 27, 130, 159, 319, 404, 435, 437, 439, 445
FatI CATG 1 cut(s) 317
FauI CCCGC 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 108, 236
FokI GGATG 1 cut(s) 390
Fsp4HI GCNGC 2 cut(s) 108, 236
FspBI CTAG 4 cut(s) 239, 357, 399, 416
GlaI GCGC 1 cut(s) 234
GluI GCNGC 2 cut(s) 108, 236
GsuI CTGGAG 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 236
HhaI GCGC 1 cut(s) 235
Hin1II CATG 1 cut(s) 321
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HinfI GANTC 4 cut(s) 7, 251, 314, 353
Hpy166II GTNNAC 2 cut(s) 362, 421
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 3 cut(s) 197, 297, 367
Hpy8I GTNNAC 2 cut(s) 362, 421
HpyAV CCTTC 1 cut(s) 235
HpyCH4V TGCA 2 cut(s) 110, 433
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 2 cut(s) 141, 392
Hsp92II CATG 1 cut(s) 321
HspAI GCGC 1 cut(s) 233
LguI GCTCTTC 1 cut(s) 47
LpnPI CCDG 4 cut(s) 24, 132, 272, 282
Lsp1109I GCAGC 2 cut(s) 94, 222
LweI GCATC 2 cut(s) 166, 368
MaeI CTAG 4 cut(s) 239, 357, 399, 416
MaeIII GTNAC 1 cut(s) 64
MboII GAAGA 2 cut(s) 64, 200
MluCI AATT 2 cut(s) 191, 220
MlyI GAGTC 2 cut(s) 16, 308
MnlI CCTC 4 cut(s) 13, 81, 241, 272
MroXI GAANNNNTTC 1 cut(s) 192
MseI TTAA 2 cut(s) 80, 116
MspA1I CMGCKG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 57
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 176
NlaIII CATG 1 cut(s) 321
PaeR7I CTCGAG 1 cut(s) 365
PciSI GCTCTTC 1 cut(s) 47
PctI GAATGC 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 2 cut(s) 251, 353
PfoI TCCNGGA 1 cut(s) 10
PkrI GCNGC 2 cut(s) 109, 237
PleI GAGTC 2 cut(s) 15, 308
PpsI GAGTC 2 cut(s) 15, 308
Psp6I CCWGG 1 cut(s) 10
PspEI GGTNACC 1 cut(s) 64
PspGI CCWGG 1 cut(s) 10
PspPI GGNCC 1 cut(s) 306
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 2 cut(s) 80, 116
SatI GCNGC 2 cut(s) 108, 236
Sau96I GGNCC 1 cut(s) 306
SchI GAGTC 2 cut(s) 16, 308
ScrFI CCNGG 1 cut(s) 12
SetI ASST 5 cut(s) 24, 109, 151, 351, 398
SfaNI GCATC 2 cut(s) 166, 368
Sfr274I CTCGAG 1 cut(s) 365
SinI GGWCC 1 cut(s) 306
SlaI CTCGAG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SpeI ACTAGT 1 cut(s) 415
Sse9I AATT 2 cut(s) 191, 220
SsiI CCGC 2 cut(s) 179, 375
SspMI CTAG 4 cut(s) 239, 357, 399, 416
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 2 cut(s) 34, 74
TaqI TCGA 1 cut(s) 366
TasI AATT 2 cut(s) 191, 220
TfiI GAWTC 2 cut(s) 251, 353
Tru1I TTAA 2 cut(s) 80, 116
Tru9I TTAA 2 cut(s) 80, 116
TseI GCWGC 2 cut(s) 107, 235
TspDTI ATGAA 2 cut(s) 341, 426
VpaK11BI GGWCC 1 cut(s) 306
XapI RAATTY 2 cut(s) 191, 220
XhoI CTCGAG 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 4 cut(s) 239, 357, 399, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.