FvH4_2g37110

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000234
Physical Location & Seq
Reverse (-)
27068193 .. 27069215
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37110.t1

Sequence Viewer

Length: 1023 bp
ATGCCAACCATCAAACTACCGGATGAACTATTGGATTATGTCTTTGCAAGATTACCTGTGAAGTCTGCTGTAGTGCTAACATGTGTTTGCAAATCTTTCAAGACTTTAATTACCAGTTCTAGATTCATACACCTTCATCGTGAAAGGAATATGAAAACTGCTTCCAATTATCTACTTGTCCGCAGTGCCGCCAGTACGGAGATTGGTTCCATGTCACGCATTTGTGCTAGAACATTTGCCGGGGAGTCGGACATACAGCTTCTTGAGGATGCAGAGAGGGAGTTTCGTTTTGAATTACCTGTTTACGGATCATACGATGGGTTGCTTTGCTTATCCAGCATGAATCTGTTTGTAGATACCCCTATATACTTGTGGAATCCATCAATGAGAAAAGTCAGAAGACTTCCCCACGGCCTCATCCCAAGCACCTCTGGTACTGTGCATAATCGCCATGGGTATCGAGTTACTCTCGGATTCGGGTTCCACTTTGATATCGATGGCGGGAATGACTACAAGGTTATAAAGTTTTTACGCCATGCAACTGACTCTGGCAATGCTTTTAAACTCGAGGTATACAGTCTTAATTTGAATTCTTGGAAAACAGTAAGCAGAGTTCCCCATGTTCCAAAAAATGCTACATTTCGCCCCAAATGTGCATGCTTGAATGGAGTTGTGTATTGGCTTCTAAATGACGTCAGATTTACCATTGTTTCTTTTGATATGCGGCATGAGTCATTTCAAATCAGGAGGTTTAGTTGTGACTTTTACCCAGTTATGTATCCAAACTGTATGCAAGCGTTGAACAATTCGCTTTCTTTGTTTCGTGTTAGACATGTGGGGGAGATGCGCTACCGTGACGTATACATTCTGAACATGAAACAGAGCAGATTGGATCTATCCAGGACTCTTCGTATGGAATGGACATCTATAGCATGGTCACTGGGGTTCAACACAGGTGGCAGAGGGCAAGGCATTGATGTGATTATCAGGACTGATACTCAAGTGCAAGACTTGTTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

341

Amino Acids

39.21

Weight (kDa)

9.47

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 43 2.5e-09 F-box domain
FBA_1 PF07734 96 - 249 8.4e-16 F-box associated beta propeller domain
FBA_3 PF08268 99 - 251 2e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 521
AatII GACGTC 1 cut(s) 696
AccI GTMKAC 2 cut(s) 573, 861
AciI CCGC 4 cut(s) 181, 189, 501, 724
AclWI GGATC 2 cut(s) 316, 900
AcsI RAATTY 1 cut(s) 589
AcyI GRCGYC 1 cut(s) 693
AfaI GTAC 2 cut(s) 196, 436
AfiI CCNNNNNNNGG 1 cut(s) 305
AflIII ACRYGT 2 cut(s) 80, 832
AgsI TTSAA 7 cut(s) 100, 293, 589, 664, 740, 802, 949
AjnI CCWGG 1 cut(s) 899
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
AlwI GGATC 2 cut(s) 316, 900
Ama87I CYCGRG 1 cut(s) 566
AoxI GGCC 1 cut(s) 412
ApoI RAATTY 1 cut(s) 589
AspLEI GCGC 1 cut(s) 849
AsuC2I CCSGG 1 cut(s) 241
AvaI CYCGRG 1 cut(s) 566
BaeI ACNNNNGTAYC 2 cut(s) 987, 1020
BbsI GAAGAC 1 cut(s) 406
BccI CCATC 4 cut(s) 17, 311, 388, 491
BceAI ACGGC 1 cut(s) 427
BciT130I CCWGG 1 cut(s) 901
BciVI GTATCC 1 cut(s) 789
BcnI CCSGG 1 cut(s) 241
BfaI CTAG 2 cut(s) 120, 228
BfmI CTRYAG 2 cut(s) 69, 927
BfuI GTATCC 1 cut(s) 789
BisI GCNGC 2 cut(s) 189, 725
BlsI GCNGC 2 cut(s) 190, 726
Bme1390I CCNGG 2 cut(s) 241, 901
BmeT110I CYCGRG 1 cut(s) 566
BmiI GGNNCC 2 cut(s) 208, 482
BmrFI CCNGG 2 cut(s) 241, 901
BmrI ACTGGG 2 cut(s) 764, 950
BmsI GCATC 2 cut(s) 259, 834
BmuI ACTGGG 2 cut(s) 764, 950
BpiI GAAGAC 1 cut(s) 406
BplI GAGNNNNNCTC 2 cut(s) 453, 485
BpuEI CTTGAG 2 cut(s) 284, 984
BpuMI CCSGG 1 cut(s) 241
Bsa29I ATCGAT 1 cut(s) 495
BsaHI GRCGYC 1 cut(s) 693
BsaJI CCNNGG 3 cut(s) 240, 409, 451
BsaWI WCCGGW 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 739, 769
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse1I ACTGG 4 cut(s) 114, 192, 770, 945
Bse3DI GCAATG 1 cut(s) 559
BseBI CCWGG 1 cut(s) 901
BseCI ATCGAT 1 cut(s) 495
BseDI CCNNGG 3 cut(s) 240, 409, 451
BseGI GGATG 3 cut(s) 28, 274, 417
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMI GCAATG 1 cut(s) 559
BseNI ACTGG 4 cut(s) 114, 192, 770, 945
BshFI GGCC 1 cut(s) 414
BshVI ATCGAT 1 cut(s) 495
BsiHKCI CYCGRG 1 cut(s) 566
BsiSI CCGG 2 cut(s) 20, 240
BslI CCNNNNNNNGG 1 cut(s) 305
BsnI GGCC 1 cut(s) 414
BsoBI CYCGRG 1 cut(s) 566
Bsp143I GATC 2 cut(s) 308, 892
Bsp19I CCATGG 1 cut(s) 451
BspACI CCGC 4 cut(s) 181, 189, 501, 724
BspANI GGCC 1 cut(s) 414
BspDI ATCGAT 1 cut(s) 495
BspLI GGNNCC 2 cut(s) 208, 482
BspPI GGATC 2 cut(s) 316, 900
BsrDI GCAATG 1 cut(s) 559
BsrI ACTGG 4 cut(s) 114, 192, 770, 945
BssECI CCNNGG 3 cut(s) 240, 409, 451
BssMI GATC 2 cut(s) 308, 892
BssNAI GTATAC 2 cut(s) 574, 862
BssNI GRCGYC 1 cut(s) 693
BssT1I CCWWGG 1 cut(s) 451
Bst1107I GTATAC 2 cut(s) 574, 862
Bst2UI CCWGG 1 cut(s) 901
Bst4CI ACNGT 5 cut(s) 439, 578, 604, 788, 854
Bst6I CTCTTC 1 cut(s) 912
BstACI GRCGYC 1 cut(s) 693
BstC8I GCNNGC 2 cut(s) 658, 795
BstDSI CCRYGG 2 cut(s) 409, 451
BstF5I GGATG 3 cut(s) 28, 274, 417
BstHHI GCGC 1 cut(s) 849
BstKTI GATC 2 cut(s) 311, 895
BstMBI GATC 2 cut(s) 308, 892
BstMWI GCNNNNNNNGC 1 cut(s) 336
BstNI CCWGG 1 cut(s) 901
BstNSI RCATGY 3 cut(s) 84, 660, 836
BstSCI CCNGG 2 cut(s) 239, 899
BstSFI CTRYAG 2 cut(s) 69, 927
BstV2I GAAGAC 1 cut(s) 406
BstX2I RGATCY 1 cut(s) 892
BstYI RGATCY 1 cut(s) 892
BstZ17I GTATAC 2 cut(s) 574, 862
Bsu15I ATCGAT 1 cut(s) 495
BsuI GTATCC 1 cut(s) 789
BsuRI GGCC 1 cut(s) 414
BsuTUI ATCGAT 1 cut(s) 495
BtgI CCRYGG 2 cut(s) 409, 451
BtsCI GGATG 3 cut(s) 28, 274, 417
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 2 cut(s) 190, 938
Cac8I GCNNGC 2 cut(s) 658, 795
CfoI GCGC 1 cut(s) 849
ClaI ATCGAT 1 cut(s) 495
Csp6I GTAC 2 cut(s) 195, 435
CspCI CAANNNNNGTGG 2 cut(s) 937, 972
CviJI RGCY 3 cut(s) 259, 414, 682
CviKI_1 RGCY 3 cut(s) 259, 414, 682
CviQI GTAC 2 cut(s) 195, 435
DpnI GATC 2 cut(s) 310, 894
DpnII GATC 2 cut(s) 308, 892
DraI TTTAAA 1 cut(s) 562
Eam1104I CTCTTC 1 cut(s) 912
EarI CTCTTC 1 cut(s) 912
Eco130I CCWWGG 1 cut(s) 451
Eco32I GATATC 1 cut(s) 493
Eco88I CYCGRG 1 cut(s) 566
EcoRI GAATTC 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 899
EcoRV GATATC 1 cut(s) 493
EcoT14I CCWWGG 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 451
FauI CCCGC 1 cut(s) 494
FblI GTMKAC 2 cut(s) 573, 861
Fnu4HI GCNGC 2 cut(s) 189, 725
FokI GGATG 3 cut(s) 35, 281, 404
Fsp4HI GCNGC 2 cut(s) 189, 725
FspBI CTAG 2 cut(s) 120, 228
GlaI GCGC 1 cut(s) 848
GluI GCNGC 2 cut(s) 189, 725
HaeIII GGCC 1 cut(s) 414
HapII CCGG 2 cut(s) 20, 240
HhaI GCGC 1 cut(s) 849
Hin1I GRCGYC 1 cut(s) 693
Hin6I GCGC 1 cut(s) 847
HinP1I GCGC 1 cut(s) 847
HinfI GANTC 8 cut(s) 123, 245, 343, 376, 474, 545, 731, 904
HpaII CCGG 2 cut(s) 20, 240
Hpy166II GTNNAC 3 cut(s) 304, 574, 862
Hpy188I TCNGA 5 cut(s) 250, 398, 473, 698, 870
Hpy188III TCNNGA 6 cut(s) 100, 120, 140, 263, 745, 988
Hpy8I GTNNAC 3 cut(s) 304, 574, 862
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 5 cut(s) 439, 578, 604, 788, 854
HpyCH4IV ACGT 2 cut(s) 693, 858
HpyCH4V TGCA 8 cut(s) 47, 90, 272, 442, 539, 656, 793, 1006
HpyF10VI GCNNNNNNNGC 1 cut(s) 336
HpySE526I ACGT 2 cut(s) 693, 858
Hsp92I GRCGYC 1 cut(s) 693
HspAI GCGC 1 cut(s) 847
Kzo9I GATC 2 cut(s) 308, 892
LweI GCATC 2 cut(s) 259, 834
MaeI CTAG 2 cut(s) 120, 228
MaeII ACGT 2 cut(s) 693, 858
MaeIII GTNAC 5 cut(s) 213, 463, 758, 854, 936
MalI GATC 2 cut(s) 310, 894
MboI GATC 2 cut(s) 308, 892
MboII GAAGA 2 cut(s) 411, 899
MflI RGATCY 1 cut(s) 892
MluCI AATT 6 cut(s) 108, 166, 293, 583, 589, 805
MlyI GAGTC 4 cut(s) 254, 539, 740, 898
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 7 cut(s) 259, 270, 425, 439, 562, 741, 956
MseI TTAA 4 cut(s) 107, 561, 582, 1021
MslI CAYNNNNRTG 1 cut(s) 977
MspI CCGG 2 cut(s) 20, 240
MspR9I CCNGG 2 cut(s) 241, 901
MvaI CCWGG 1 cut(s) 901
MwoI GCNNNNNNNGC 1 cut(s) 336
NciI CCSGG 1 cut(s) 241
NcoI CCATGG 1 cut(s) 451
NdeII GATC 2 cut(s) 308, 892
NlaIV GGNNCC 2 cut(s) 208, 482
NmuCI GTSAC 4 cut(s) 213, 758, 854, 936
NspI RCATGY 3 cut(s) 84, 660, 836
PaeI GCATGC 1 cut(s) 660
PaeR7I CTCGAG 1 cut(s) 566
PciI ACATGT 2 cut(s) 80, 832
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PfeI GAWTC 4 cut(s) 123, 343, 376, 474
PfoI TCCNGGA 1 cut(s) 899
PkrI GCNGC 2 cut(s) 190, 726
PleI GAGTC 4 cut(s) 253, 539, 739, 898
PpsI GAGTC 4 cut(s) 253, 539, 739, 898
PscI ACATGT 2 cut(s) 80, 832
PsiI TTATAA 1 cut(s) 521
Psp6I CCWGG 1 cut(s) 899
PspGI CCWGG 1 cut(s) 899
PspN4I GGNNCC 2 cut(s) 208, 482
PspXI VCTCGAGB 1 cut(s) 566
PsrI GAACNNNNNNTAC 2 cut(s) 597, 629
PsuI RGATCY 1 cut(s) 892
RsaI GTAC 2 cut(s) 196, 436
RsaNI GTAC 2 cut(s) 195, 435
RseI CAYNNNNRTG 1 cut(s) 977
SaqAI TTAA 4 cut(s) 107, 561, 582, 1021
SatI GCNGC 2 cut(s) 189, 725
Sau3AI GATC 2 cut(s) 308, 892
SchI GAGTC 4 cut(s) 254, 539, 740, 898
ScrFI CCNGG 2 cut(s) 241, 901
SfaNI GCATC 2 cut(s) 259, 834
SfcI CTRYAG 2 cut(s) 69, 927
Sfr274I CTCGAG 1 cut(s) 566
SlaI CTCGAG 1 cut(s) 566
SmiMI CAYNNNNRTG 1 cut(s) 977
SmlI CTYRAG 3 cut(s) 263, 566, 999
SmoI CTYRAG 3 cut(s) 263, 566, 999
SphI GCATGC 1 cut(s) 660
Sse9I AATT 6 cut(s) 108, 166, 293, 583, 589, 805
SsiI CCGC 4 cut(s) 181, 189, 501, 724
SspMI CTAG 2 cut(s) 120, 228
StyD4I CCNGG 2 cut(s) 239, 899
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 5 cut(s) 439, 578, 604, 788, 854
TaiI ACGT 2 cut(s) 696, 861
TaqI TCGA 3 cut(s) 460, 495, 567
TasI AATT 6 cut(s) 108, 166, 293, 583, 589, 805
TauI GCSGC 2 cut(s) 191, 727
TfiI GAWTC 4 cut(s) 123, 343, 376, 474
Tru1I TTAA 4 cut(s) 107, 561, 582, 1021
Tru9I TTAA 4 cut(s) 107, 561, 582, 1021
TscAI CASTG 2 cut(s) 190, 945
TseFI GTSAC 4 cut(s) 213, 758, 854, 936
Tsp45I GTSAC 4 cut(s) 213, 758, 854, 936
TspDTI ATGAA 7 cut(s) 39, 115, 125, 167, 356, 890, 1007
TspGWI ACGGA 2 cut(s) 212, 321
TspRI CASTG 2 cut(s) 190, 945
XapI RAATTY 1 cut(s) 589
XbaI TCTAGA 1 cut(s) 119
XceI RCATGY 3 cut(s) 84, 660, 836
XhoI CTCGAG 1 cut(s) 566
XmiI GTMKAC 2 cut(s) 573, 861
XspI CTAG 2 cut(s) 120, 228
ZraI GACGTC 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.