RchiOBHm_Chr2g0144781

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000234
Physical Location & Seq
Reverse (-)
62372776 .. 62373372
597 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51468

Sequence Viewer

Length: 597 bp
ATGAGTAATTTCAATTACATCCCTGAAGAAATTGTGACCGATATCCTACAGAGACTATCCTCAAAATCCCTTATTCGGTTTAGGTGTGTATGCAAGTCATGGCGAGATTTGATTCGGAGCTCAAGTTTTGCTTGGTCACATCTTAATAGGAATGTAGCGAGACGCTCCAATAGATATCTGTATGCTTACCACCAGTCCTCAATAGATGAACCAGAACATTGGCAGTACTCACTTTTCTCTACTGAAGCATTTGAGCCGTGCTTGAATTTAAGACATCCCTTACGGACCAGAGAAAAATTGAGAATATATGGTTCAAGCAATGGCCTTGTGTGTATCTCTGATGAAAAACTTCATCCAAATAGTCGTATATGCATATGGAATCCATCTATTCGGAAGTCTAGGACTCTTCCGAATATTGAGACGCATTTGTCTGATATAAGTACTACCCATCTCTCATTTGGATTCCATCCAGAGCTTGATGATTACATAGTTGTGAGGATTGTCCATCCTTATATGGGGAGTCCTGGAGTTGAGGTTTATACCCTTGGTACAAACTCTTGGAAGAGCATTCGGGTAACCCCTAGCCTCCTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

198

Amino Acids

23.09

Weight (kDa)

9.18

Isoelectric Point (pI)

49.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 5 - 50 2.6e-10 F-box-like
F-box PF00646 7 - 43 8.4e-12 F-box domain
Beta-prop_KIB1-4 PF03478 90 - 192 1.4e-06 KIB1-4 beta-propeller
FBA_3 PF08268 98 - 191 1.8e-10 F-box associated beta propeller domain
FBA_1 PF07734 105 - 195 1.4e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 427
AcsI RAATTY 1 cut(s) 265
AcuI CTGAAG 2 cut(s) 45, 264
AfaI GTAC 3 cut(s) 227, 442, 550
AfiI CCNNNNNNNGG 2 cut(s) 75, 515
AgsI TTSAA 3 cut(s) 13, 265, 315
AjnI CCWGG 1 cut(s) 523
AluBI AGCT 2 cut(s) 120, 475
AluI AGCT 2 cut(s) 120, 475
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 3 cut(s) 46, 154, 413
AoxI GGCC 1 cut(s) 322
ApoI RAATTY 1 cut(s) 265
Asp700I GAANNNNTTC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 285
AvaII GGWCC 1 cut(s) 285
BanII GRGCYC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 122
BccI CCATC 4 cut(s) 391, 456, 474, 513
BceAI ACGGC 1 cut(s) 241
BciT130I CCWGG 1 cut(s) 525
BcoDI GTCTC 3 cut(s) 46, 154, 413
BfaI CTAG 2 cut(s) 399, 582
BfmI CTRYAG 1 cut(s) 47
BmcAI AGTACT 2 cut(s) 227, 442
Bme1390I CCNGG 1 cut(s) 525
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 285
BmrFI CCNGG 1 cut(s) 525
BpmI CTGGAG 1 cut(s) 546
BpuEI CTTGAG 1 cut(s) 106
BsaJI CCNNGG 2 cut(s) 544, 589
BsaXI ACNNNNNCTCC 4 cut(s) 109, 139, 519, 549
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 515
Bse1I ACTGG 1 cut(s) 193
Bse3DI GCAATG 1 cut(s) 325
BseBI CCWGG 1 cut(s) 525
BseDI CCNNGG 2 cut(s) 544, 589
BseGI GGATG 5 cut(s) 18, 274, 352, 466, 505
BseLI CCNNNNNNNGG 2 cut(s) 75, 515
BseMI GCAATG 1 cut(s) 325
BseNI ACTGG 1 cut(s) 193
BshFI GGCC 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 75, 515
BsmAI GTCTC 3 cut(s) 46, 154, 413
BsmBI CGTCTC 2 cut(s) 154, 413
BsmI GAATGC 1 cut(s) 567
BsnI GGCC 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 122
BspANI GGCC 1 cut(s) 324
BspQI GCTCTTC 1 cut(s) 557
BsrDI GCAATG 1 cut(s) 325
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 2 cut(s) 544, 589
BssT1I CCWWGG 2 cut(s) 544, 589
Bst2UI CCWGG 1 cut(s) 525
Bst6I CTCTTC 2 cut(s) 411, 557
BstEII GGTNACC 1 cut(s) 574
BstF5I GGATG 5 cut(s) 18, 274, 352, 466, 505
BstMAI GTCTC 3 cut(s) 46, 154, 413
BstNI CCWGG 1 cut(s) 525
BstPI GGTNACC 1 cut(s) 574
BstSCI CCNGG 1 cut(s) 523
BstSFI CTRYAG 1 cut(s) 47
BstXI CCANNNNNNTGG 1 cut(s) 219
BsuRI GGCC 1 cut(s) 324
BtsCI GGATG 5 cut(s) 18, 274, 352, 466, 505
Cfr13I GGNCC 1 cut(s) 285
CseI GACGC 2 cut(s) 171, 430
Csp6I GTAC 3 cut(s) 226, 441, 549
CviAII CATG 1 cut(s) 99
CviJI RGCY 5 cut(s) 120, 256, 324, 475, 585
CviKI_1 RGCY 5 cut(s) 120, 256, 324, 475, 585
CviQI GTAC 3 cut(s) 226, 441, 549
DrdI GACNNNNNNGTC 1 cut(s) 427
DseDI GACNNNNNNGTC 1 cut(s) 427
Eam1104I CTCTTC 2 cut(s) 411, 557
EarI CTCTTC 2 cut(s) 411, 557
Ecl136II GAGCTC 1 cut(s) 120
Eco130I CCWWGG 2 cut(s) 544, 589
Eco24I GRGCYC 1 cut(s) 122
Eco32I GATATC 2 cut(s) 43, 176
Eco47I GGWCC 1 cut(s) 285
Eco53kI GAGCTC 1 cut(s) 120
Eco57I CTGAAG 2 cut(s) 45, 264
Eco91I GGTNACC 1 cut(s) 574
EcoICRI GAGCTC 1 cut(s) 120
EcoO65I GGTNACC 1 cut(s) 574
EcoRII CCWGG 1 cut(s) 523
EcoRV GATATC 2 cut(s) 43, 176
EcoT14I CCWWGG 2 cut(s) 544, 589
EcoT22I ATGCAT 1 cut(s) 374
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 2 cut(s) 544, 589
Esp3I CGTCTC 2 cut(s) 154, 413
FaeI CATG 1 cut(s) 102
FalI AAGNNNNNCTT 2 cut(s) 115, 147
FatI CATG 1 cut(s) 98
FauNDI CATATG 1 cut(s) 374
FokI GGATG 5 cut(s) 5, 261, 339, 453, 492
FriOI GRGCYC 1 cut(s) 122
FspBI CTAG 2 cut(s) 399, 582
GsuI CTGGAG 1 cut(s) 546
HaeIII GGCC 1 cut(s) 324
HgaI GACGC 2 cut(s) 171, 430
Hin1II CATG 1 cut(s) 102
HinfI GANTC 5 cut(s) 112, 379, 403, 462, 520
Hpy188I TCNGA 5 cut(s) 117, 340, 393, 411, 433
Hpy188III TCNNGA 1 cut(s) 470
HpyCH4V TGCA 2 cut(s) 93, 372
Hsp92II CATG 1 cut(s) 102
LguI GCTCTTC 1 cut(s) 557
LmnI GCTCC 2 cut(s) 117, 170
LpnPI CCDG 7 cut(s) 36, 206, 225, 301, 483, 510, 537
MaeI CTAG 2 cut(s) 399, 582
MaeIII GTNAC 3 cut(s) 34, 135, 574
MboII GAAGA 3 cut(s) 38, 398, 574
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 5 cut(s) 7, 13, 30, 265, 296
MlyI GAGTC 2 cut(s) 397, 529
MnlI CCTC 5 cut(s) 70, 208, 489, 526, 596
Mph1103I ATGCAT 1 cut(s) 374
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 3 cut(s) 144, 269, 595
MslI CAYNNNNRTG 1 cut(s) 491
MspR9I CCNGG 1 cut(s) 525
Mva1269I GAATGC 1 cut(s) 567
MvaI CCWGG 1 cut(s) 525
NdeI CATATG 1 cut(s) 374
NlaIII CATG 1 cut(s) 102
NmuCI GTSAC 2 cut(s) 34, 135
NsiI ATGCAT 1 cut(s) 374
PciSI GCTCTTC 1 cut(s) 557
PctI GAATGC 1 cut(s) 567
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 3 cut(s) 112, 379, 462
PfoI TCCNGGA 1 cut(s) 523
PleI GAGTC 2 cut(s) 397, 528
PpsI GAGTC 2 cut(s) 397, 528
Psp124BI GAGCTC 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 523
PspEI GGTNACC 1 cut(s) 574
PspGI CCWGG 1 cut(s) 523
PspPI GGNCC 1 cut(s) 285
RsaI GTAC 3 cut(s) 227, 442, 550
RsaNI GTAC 3 cut(s) 226, 441, 549
RseI CAYNNNNRTG 1 cut(s) 491
SacI GAGCTC 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 557
SaqAI TTAA 3 cut(s) 144, 269, 595
Sau96I GGNCC 1 cut(s) 285
ScaI AGTACT 2 cut(s) 227, 442
SchI GAGTC 2 cut(s) 397, 529
ScrFI CCNGG 1 cut(s) 525
SduI GDGCHC 1 cut(s) 122
SetI ASST 4 cut(s) 86, 122, 477, 537
SfcI CTRYAG 1 cut(s) 47
SinI GGWCC 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
Sse9I AATT 5 cut(s) 7, 13, 30, 265, 296
SspI AATATT 1 cut(s) 415
SspMI CTAG 2 cut(s) 399, 582
SstI GAGCTC 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 523
StyI CCWWGG 2 cut(s) 544, 589
TaqII GACCGA 1 cut(s) 53
TasI AATT 5 cut(s) 7, 13, 30, 265, 296
TatI WGTACW 2 cut(s) 225, 440
TfiI GAWTC 3 cut(s) 112, 379, 462
Tru1I TTAA 3 cut(s) 144, 269, 595
Tru9I TTAA 3 cut(s) 144, 269, 595
TseFI GTSAC 2 cut(s) 34, 135
Tsp45I GTSAC 2 cut(s) 34, 135
TspDTI ATGAA 3 cut(s) 222, 341, 357
TspGWI ACGGA 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 285
XapI RAATTY 1 cut(s) 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 2 cut(s) 399, 582
ZrmI AGTACT 2 cut(s) 227, 442
Zsp2I ATGCAT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.