Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000234

Physical Location & Seq

Genomic Coordinates Forward (+)

31729731 .. 31730582

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0301100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAACACAAACAAAGACAATGGCAAGAAGCCAACCGCCGCCTCCGGGCAGAACTCCACCGACGTCAACCTCAAAGTCAAGAACCAGAAATTGAAAACAATGTACTTCAGGATGAGGCGCAATACTCCGCTCCAGGAGCTTATTGATGTTTACTGTAAGAAAAACGACGTGTACCACTTCCGATTCCTCTTTGATGGCCATGGGATTAATCCCAAGCTCACTGCACTCCAGTCTGGAATGAAAGATGGGGATGAAATTTCTGCAATGTTGCACGTTGACGGAGGTGGTCGACGTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

99

Amino Acids

11.17

Weight (kDa)

9.76

Isoelectric Point (pI)

27.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	23 - 90	5e-15	Ubiquitin-2 like Rad60 SUMO-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica	MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica	Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis	pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis	RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata	RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora	Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii	Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa	Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha	Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana	Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	66
AccBSI	CCGCTC	1 cut(s)	130
AccI	GTMKAC	1 cut(s)	289
AciI	CCGC	3 cut(s)	36, 39, 128
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	91
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	2 cut(s)	104, 173
AfiI	CCNNNNNNNGG	1 cut(s)	45
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	94
AjiI	CACGTC	2 cut(s)	169, 293
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	2 cut(s)	139, 217
AluI	AGCT	2 cut(s)	139, 217
AoxI	GGCC	1 cut(s)	196
ApoI	RAATTY	1 cut(s)	255
AseI	ATTAAT	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	120
AsuC2I	CCSGG	1 cut(s)	46
BalI	TGGCCA	1 cut(s)	198
BccI	CCATC	2 cut(s)	188, 239
BciT130I	CCWGG	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	46
BfaI	CTAG	1 cut(s)	298
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	2 cut(s)	46, 134
BmgBI	CACGTC	2 cut(s)	169, 293
BmrFI	CCNGG	2 cut(s)	46, 134
BpmI	CTGGAG	2 cut(s)	116, 212
BpuMI	CCSGG	1 cut(s)	46
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	2 cut(s)	117, 256
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	45
BsnI	GGCC	1 cut(s)	198
Bsp19I	CCATGG	1 cut(s)	199
BspACI	CCGC	3 cut(s)	36, 39, 128
BspANI	GGCC	1 cut(s)	198
BsrBI	CCGCTC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	199
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	117, 256
BstHHI	GCGC	1 cut(s)	120
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	44, 132
BsuRI	GGCC	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	199
BtrI	CACGTC	2 cut(s)	169, 293
BtsCI	GGATG	2 cut(s)	117, 256
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
CfoI	GCGC	1 cut(s)	120
Csp6I	GTAC	2 cut(s)	103, 172
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	5 cut(s)	31, 139, 198, 217, 297
CviKI_1	RGCY	5 cut(s)	31, 139, 198, 217, 297
CviQI	GTAC	2 cut(s)	103, 172
EaeI	YGGCCR	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	1 cut(s)	203
FaiI	YATR	1 cut(s)	201
FatI	CATG	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	2 cut(s)	124, 263
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	1 cut(s)	298
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	1 cut(s)	39
GsuI	CTGGAG	2 cut(s)	116, 212
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	1 cut(s)	120
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	203
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	3 cut(s)	67, 277, 290
HindII	GTYRAC	3 cut(s)	67, 277, 290
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	1 cut(s)	45
Hpy166II	GTNNAC	5 cut(s)	67, 151, 172, 277, 290
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	3 cut(s)	79, 109, 234
Hpy8I	GTNNAC	5 cut(s)	67, 151, 172, 277, 290
Hpy99I	CGWCG	3 cut(s)	65, 170, 294
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	4 cut(s)	63, 168, 273, 292
HpyCH4V	TGCA	3 cut(s)	224, 263, 271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpySE526I	ACGT	4 cut(s)	63, 168, 273, 292
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	203
HspAI	GCGC	1 cut(s)	118
LmnI	GCTCC	2 cut(s)	135, 136
LpnPI	CCDG	7 cut(s)	58, 94, 98, 119, 146, 219, 242
MaeI	CTAG	1 cut(s)	298
MaeII	ACGT	4 cut(s)	63, 168, 273, 292
MbiI	CCGCTC	1 cut(s)	130
MlsI	TGGCCA	1 cut(s)	198
MluCI	AATT	2 cut(s)	89, 255
MluNI	TGGCCA	1 cut(s)	198
MnlI	CCTC	5 cut(s)	52, 80, 108, 197, 275
Mox20I	TGGCCA	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	198
MseI	TTAA	1 cut(s)	207
Msp20I	TGGCCA	1 cut(s)	198
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	46, 134
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	136
NciI	CCSGG	1 cut(s)	46
NcoI	CCATGG	1 cut(s)	199
NlaIII	CATG	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	183
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	40
PshBI	ATTAAT	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
RsaI	GTAC	2 cut(s)	104, 173
RsaNI	GTAC	2 cut(s)	103, 172
SalI	GTCGAC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	46, 134
SetI	ASST	8 cut(s)	66, 72, 141, 171, 219, 276, 286, 295
Sse9I	AATT	2 cut(s)	89, 255
SsiI	CCGC	3 cut(s)	36, 39, 128
SspMI	CTAG	1 cut(s)	298
StyD4I	CCNGG	2 cut(s)	44, 132
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	4 cut(s)	66, 171, 276, 295
TaqI	TCGA	1 cut(s)	289
TasI	AATT	2 cut(s)	89, 255
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	226
TspDTI	ATGAA	3 cut(s)	17, 254, 267
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	1 cut(s)	226
VspI	ATTAAT	1 cut(s)	207
XapI	RAATTY	1 cut(s)	255
XmiI	GTMKAC	1 cut(s)	289
XspI	CTAG	1 cut(s)	298
ZraI	GACGTC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.