Rmu_sc0003909.1_g000002

F-box protein CPR30-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003909.1
OG0000234
Physical Location & Seq
Forward (+)
16452 .. 18066
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003909.1_g000002.1.cds

Sequence Viewer

Length: 741 bp
atgttgcatgaatggaacaaggtttccatggaagttgaggtgtatagtcttagcaacaactcctggaaggtgattgaaattactccttcgttaaattctggatggtggtatctcacaggttatgaggtttgcaatggaatagtatattggctgatttctggaggtcgttataggattgtgtcctttgatacagggagggaaaaatttggtgagttagtggttccagaacccatattgccggttaagggggctgtcaagattgaagtgtacaaggaaaccatatgcctgcttcaaggtgaaacagatgttgatttatgggttctgcaagaagggtcttttcaaaggctgcgtactattttactgcctcgagcaaatattttcatactaattggcttatttacagataatggactcttggtacaagaacaatcaagattcactgagctagatttgtttgatcttgaatccaaccagcttaaaagtaccggaatccttatgtgccaacgtgagggattagtcggggtaggtggaggggaagagagagaggaagaaaatgacgatggtggcgtttccggaggatgccgaatgatggagataattatgggtcgggtcgggggctgttcgggtctgggtaaaccaatcactacttggctaattcaccgggaaggcttactggagatagatgctacgtgggaggatgcgagatcaatcacaactcgctatcttgagttttgcgcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

246

Amino Acids

27.72

Weight (kDa)

4.65

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 572
AcsI RAATTY 2 cut(s) 94, 203
AfaI GTAC 4 cut(s) 269, 352, 420, 484
AfiI CCNNNNNNNGG 3 cut(s) 245, 508, 589
AgsI TTSAA 5 cut(s) 77, 263, 293, 341, 464
AjnI CCWGG 1 cut(s) 62
AjuI GAANNNNNNNTTGG 2 cut(s) 130, 162
AloI GAACNNNNNNTCC 2 cut(s) 8, 40
AluBI AGCT 2 cut(s) 445, 475
AluI AGCT 2 cut(s) 445, 475
Ama87I CYCGRG 1 cut(s) 366
Aor13HI TCCGGA 1 cut(s) 572
ApeKI GCWGC 1 cut(s) 346
ApoI RAATTY 2 cut(s) 94, 203
AspLEI GCGC 1 cut(s) 737
AsuC2I CCSGG 1 cut(s) 662
AsuHPI GGTGA 4 cut(s) 82, 221, 308, 650
AvaI CYCGRG 1 cut(s) 366
BbvI GCAGC 1 cut(s) 333
BccI CCATC 3 cut(s) 96, 554, 583
BciT130I CCWGG 1 cut(s) 64
BcnI CCSGG 1 cut(s) 662
BfaI CTAG 1 cut(s) 446
BisI GCNGC 1 cut(s) 347
BlsI GCNGC 1 cut(s) 348
Bme1390I CCNGG 2 cut(s) 64, 662
BmeT110I CYCGRG 1 cut(s) 366
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 2 cut(s) 64, 662
BmsI GCATC 3 cut(s) 569, 673, 688
BpmI CTGGAG 2 cut(s) 180, 695
BpuMI CCSGG 1 cut(s) 662
BsaAI YACGTR 1 cut(s) 690
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 2 cut(s) 485, 572
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 508, 589
Bse118I RCCGGY 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 678
Bse3DI GCAATG 1 cut(s) 139
BseAI TCCGGA 1 cut(s) 572
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 3 cut(s) 107, 584, 703
BseLI CCNNNNNNNGG 3 cut(s) 245, 508, 589
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 1 cut(s) 678
BseXI GCAGC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 366
BsiSI CCGG 4 cut(s) 239, 486, 573, 661
BslI CCNNNNNNNGG 3 cut(s) 245, 508, 589
BsoBI CYCGRG 1 cut(s) 366
Bsp13I TCCGGA 1 cut(s) 572
Bsp1407I TGTACA 1 cut(s) 267
Bsp143I GATC 2 cut(s) 457, 704
Bsp19I CCATGG 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 433
BspEI TCCGGA 1 cut(s) 572
BspLI GGNNCC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 139
BsrFI RCCGGY 1 cut(s) 238
BsrGI TGTACA 1 cut(s) 267
BsrI ACTGG 1 cut(s) 678
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 457, 704
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 531
BstAUI TGTACA 1 cut(s) 267
BstBAI YACGTR 1 cut(s) 690
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 2 cut(s) 50, 441
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 3 cut(s) 107, 584, 703
BstHHI GCGC 1 cut(s) 737
BstKTI GATC 2 cut(s) 460, 707
BstMBI GATC 2 cut(s) 457, 704
BstNI CCWGG 1 cut(s) 64
BstSCI CCNGG 2 cut(s) 62, 660
BstV1I GCAGC 1 cut(s) 333
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 3 cut(s) 107, 584, 703
BtsIMutI CAGTG 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 287
CfoI GCGC 1 cut(s) 737
Cfr10I RCCGGY 1 cut(s) 238
Csp6I GTAC 4 cut(s) 268, 351, 419, 483
CviAII CATG 2 cut(s) 8, 28
CviJI RGCY 9 cut(s) 151, 251, 346, 393, 445, 475, 618, 652, 669
CviKI_1 RGCY 9 cut(s) 151, 251, 346, 393, 445, 475, 618, 652, 669
CviQI GTAC 4 cut(s) 268, 351, 419, 483
DdeI CTNAG 2 cut(s) 50, 441
DpnI GATC 2 cut(s) 459, 706
DpnII GATC 2 cut(s) 457, 704
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
Eco130I CCWWGG 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 2 cut(s) 11, 31
FatI CATG 2 cut(s) 7, 27
FauNDI CATATG 1 cut(s) 281
Fnu4HI GCNGC 1 cut(s) 347
FokI GGATG 3 cut(s) 114, 591, 710
Fsp4HI GCNGC 1 cut(s) 347
FspBI CTAG 1 cut(s) 446
GlaI GCGC 1 cut(s) 736
GluI GCNGC 1 cut(s) 347
GsuI CTGGAG 2 cut(s) 180, 695
HapII CCGG 4 cut(s) 239, 486, 573, 661
HhaI GCGC 1 cut(s) 737
Hin1II CATG 2 cut(s) 11, 31
Hin6I GCGC 1 cut(s) 735
HinP1I GCGC 1 cut(s) 735
HinfI GANTC 4 cut(s) 411, 435, 464, 489
HpaII CCGG 4 cut(s) 239, 486, 573, 661
HphI GGTGA 4 cut(s) 82, 221, 308, 650
Hpy166II GTNNAC 2 cut(s) 268, 635
Hpy188III TCNNGA 8 cut(s) 99, 159, 224, 256, 432, 461, 573, 725
Hpy8I GTNNAC 2 cut(s) 268, 635
HpyAV CCTTC 4 cut(s) 61, 96, 323, 659
HpyCH4IV ACGT 2 cut(s) 505, 689
HpyCH4V TGCA 3 cut(s) 7, 132, 325
HpyF3I CTNAG 2 cut(s) 50, 441
HpySE526I ACGT 2 cut(s) 505, 689
Hsp92II CATG 2 cut(s) 11, 31
HspAI GCGC 1 cut(s) 735
Kpn2I TCCGGA 1 cut(s) 572
Kzo9I GATC 2 cut(s) 457, 704
Lsp1109I GCAGC 1 cut(s) 333
LweI GCATC 3 cut(s) 569, 673, 688
MaeI CTAG 1 cut(s) 446
MaeII ACGT 2 cut(s) 505, 689
MalI GATC 2 cut(s) 459, 706
MboI GATC 2 cut(s) 457, 704
MboII GAAGA 2 cut(s) 548, 560
MluCI AATT 6 cut(s) 78, 94, 203, 387, 597, 654
MlyI GAGTC 1 cut(s) 405
MmeI TCCRAC 1 cut(s) 492
MroI TCCGGA 1 cut(s) 572
MseI TTAA 3 cut(s) 92, 243, 477
MspI CCGG 4 cut(s) 239, 486, 573, 661
MspR9I CCNGG 2 cut(s) 64, 662
MvaI CCWGG 1 cut(s) 64
NciI CCSGG 1 cut(s) 662
NcoI CCATGG 1 cut(s) 27
NdeI CATATG 1 cut(s) 281
NdeII GATC 2 cut(s) 457, 704
NlaIII CATG 2 cut(s) 11, 31
NlaIV GGNNCC 1 cut(s) 222
PaeR7I CTCGAG 1 cut(s) 366
PcsI WCGNNNNNNNCGW 1 cut(s) 564
PfeI GAWTC 3 cut(s) 435, 464, 489
PfoI TCCNGGA 1 cut(s) 62
PkrI GCNGC 1 cut(s) 348
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
Ppu21I YACGTR 1 cut(s) 690
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 222
PspXI VCTCGAGB 1 cut(s) 366
RsaI GTAC 4 cut(s) 269, 352, 420, 484
RsaNI GTAC 4 cut(s) 268, 351, 419, 483
SaqAI TTAA 3 cut(s) 92, 243, 477
SatI GCNGC 1 cut(s) 347
Sau3AI GATC 2 cut(s) 457, 704
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 2 cut(s) 64, 662
SfaNI GCATC 3 cut(s) 569, 673, 688
Sfr274I CTCGAG 1 cut(s) 366
SlaI CTCGAG 1 cut(s) 366
SmlI CTYRAG 2 cut(s) 366, 725
SmoI CTYRAG 2 cut(s) 366, 725
Sse9I AATT 6 cut(s) 78, 94, 203, 387, 597, 654
SspI AATATT 1 cut(s) 376
SspMI CTAG 1 cut(s) 446
StyD4I CCNGG 2 cut(s) 62, 660
StyI CCWWGG 1 cut(s) 27
TaiI ACGT 2 cut(s) 508, 692
TaqI TCGA 1 cut(s) 367
TasI AATT 6 cut(s) 78, 94, 203, 387, 597, 654
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 3 cut(s) 435, 464, 489
Tru1I TTAA 3 cut(s) 92, 243, 477
Tru9I TTAA 3 cut(s) 92, 243, 477
TscAI CASTG 1 cut(s) 445
TseI GCWGC 1 cut(s) 346
TspDTI ATGAA 2 cut(s) 24, 370
TspRI CASTG 1 cut(s) 445
XapI RAATTY 2 cut(s) 94, 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 645
XhoI CTCGAG 1 cut(s) 366
XspI CTAG 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.