Rh4AG005900

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000234
Physical Location & Seq
Forward (+)
954231 .. 956162
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG005900.1

Sequence Viewer

Length: 768 bp
ATGTTCTTCAGGATGAGAAACAAATGCAGTAAGGATGTTGCTAGTTCCATCACTGAAGATCCCCACCTAGAAATCTTAGTAAGGCTCCCAGTAAAATCTGTCATTCAGTTTCAATGTGTATGCAAGCGGTGGACGGGTTTGATTCGCAATTCAAGTTTTGTTACAACACATATCAGACAACATTCCCATACCCATCTAATTACGGATGACCGCTCAAGGTTTGACCAAATTGAGCTTTGCTACTCTCTTTTGCCTTTTGAAAGATTTGAGCAGTCCCTGGAGTTAAAACCTCCCTTTCATCCCCAACTAGACTATAAATCCCGACTAGACTACTTCAAGATATATGGTTCAACAAATGGTTTATTGTGTCTTGCTGGGAATGTAATGGATTCAAATAGCCCTATATACATATGGAACCCCTCTGTTAGGAAATTCAGGACTCTTCCACAACCAACATTCGATCATTATTGTGTGGACTATTTTCCCAAGCATGTTGATATGCCTCTCTTATTTGGATTCCACTCAGGTCTAAATGACTATAAGGTAATAAGGATGATGCTGCCTGGTTCCATCAAAATGGAGGTTTATACTCTTAGCACAAATTCTTGGACGATTATTCAAGTCATGCCACCTTGGCTCAATACTACGAAGTTTTCTACTCGATATGAATTTTGGAATGGAATGGAATATTGGCTTGCTACGAGAGATTTAATGGTTAGGGTTGTGTTGTTTGATACTAATAATGAAGAATTTGAAGAAGTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

255

Amino Acids

30.27

Weight (kDa)

7.11

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 87 - 253 2.8e-12 F-box associated beta propeller domain
FBA_3 PF08268 105 - 252 2.1e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 213
AciI CCGC 2 cut(s) 127, 211
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 4 cut(s) 431, 601, 668, 749
AcuI CTGAAG 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 426
AgsI TTSAA 8 cut(s) 113, 153, 260, 337, 351, 393, 620, 755
AjnI CCWGG 2 cut(s) 276, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 673, 705
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
AlwI GGATC 1 cut(s) 53
AlwNI CAGNNNCTG 1 cut(s) 277
ApeKI GCWGC 1 cut(s) 559
ApoI RAATTY 4 cut(s) 431, 601, 668, 749
BbvI GCAGC 1 cut(s) 546
BccI CCATC 3 cut(s) 56, 201, 578
BciT130I CCWGG 2 cut(s) 278, 564
BfaI CTAG 4 cut(s) 42, 68, 308, 326
BglI GCCNNNNNGGC 1 cut(s) 634
BisI GCNGC 1 cut(s) 560
BlsI GCNGC 1 cut(s) 561
Bme1390I CCNGG 2 cut(s) 278, 564
BmiI GGNNCC 3 cut(s) 86, 416, 568
BmrFI CCNGG 2 cut(s) 278, 564
BmrI ACTGGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 546
BmuI ACTGGG 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 276, 632
Bsc4I CCNNNNNNNGG 1 cut(s) 426
Bse1I ACTGG 1 cut(s) 89
BseBI CCWGG 2 cut(s) 278, 564
BseDI CCNNGG 2 cut(s) 276, 632
BseGI GGATG 5 cut(s) 18, 40, 211, 298, 558
BseLI CCNNNNNNNGG 1 cut(s) 426
BseMII CTCAG 1 cut(s) 537
BseNI ACTGG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 546
BseYI CCCAGC 1 cut(s) 374
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 426
BsmFI GGGAC 1 cut(s) 259
Bsp143I GATC 2 cut(s) 58, 460
BspACI CCGC 2 cut(s) 127, 211
BspCNI CTCAG 1 cut(s) 536
BspLI GGNNCC 3 cut(s) 86, 416, 568
BspPI GGATC 1 cut(s) 53
BsrBI CCGCTC 1 cut(s) 213
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 276, 632
BssMI GATC 2 cut(s) 58, 460
BssT1I CCWWGG 1 cut(s) 632
Bst2UI CCWGG 2 cut(s) 278, 564
Bst6I CTCTTC 1 cut(s) 447
BstC8I GCNNGC 2 cut(s) 125, 696
BstDEI CTNAG 3 cut(s) 76, 523, 593
BstENI CCTNNNNNAGG 1 cut(s) 424
BstF5I GGATG 5 cut(s) 18, 40, 211, 298, 558
BstKTI GATC 2 cut(s) 61, 463
BstMBI GATC 2 cut(s) 58, 460
BstMWI GCNNNNNNNGC 1 cut(s) 634
BstNI CCWGG 2 cut(s) 278, 564
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 2 cut(s) 276, 562
BstV1I GCAGC 1 cut(s) 546
BstX2I RGATCY 1 cut(s) 58
BstXI CCANNNNNNTGG 1 cut(s) 577
BstYI RGATCY 1 cut(s) 58
BtsCI GGATG 5 cut(s) 18, 40, 211, 298, 558
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 125, 696
CaiI CAGNNNCTG 1 cut(s) 277
CviAII CATG 2 cut(s) 491, 625
CviJI RGCY 5 cut(s) 85, 235, 399, 637, 694
CviKI_1 RGCY 5 cut(s) 85, 235, 399, 637, 694
DdeI CTNAG 3 cut(s) 76, 523, 593
DpnI GATC 2 cut(s) 60, 462
DpnII GATC 2 cut(s) 58, 460
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
Eco130I CCWWGG 1 cut(s) 632
Eco57I CTGAAG 1 cut(s) 75
EcoNI CCTNNNNNAGG 1 cut(s) 424
EcoRII CCWGG 2 cut(s) 276, 562
EcoT14I CCWWGG 1 cut(s) 632
ErhI CCWWGG 1 cut(s) 632
FaeI CATG 2 cut(s) 494, 628
FaqI GGGAC 1 cut(s) 259
FatI CATG 2 cut(s) 490, 624
FauNDI CATATG 1 cut(s) 410
Fnu4HI GCNGC 1 cut(s) 560
FokI GGATG 5 cut(s) 25, 47, 218, 285, 565
Fsp4HI GCNGC 1 cut(s) 560
FspBI CTAG 4 cut(s) 42, 68, 308, 326
GluI GCNGC 1 cut(s) 560
GsaI CCCAGC 1 cut(s) 378
GsuI CTGGAG 1 cut(s) 299
Hin1II CATG 2 cut(s) 494, 628
HinfI GANTC 4 cut(s) 142, 389, 439, 516
Hpy166II GTNNAC 2 cut(s) 132, 475
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 4 cut(s) 10, 321, 337, 436
Hpy8I GTNNAC 2 cut(s) 132, 475
HpyCH4V TGCA 2 cut(s) 27, 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 634
HpyF3I CTNAG 3 cut(s) 76, 523, 593
Hsp92II CATG 2 cut(s) 494, 628
Kzo9I GATC 2 cut(s) 58, 460
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 8 cut(s) 102, 263, 290, 360, 421, 510, 549, 576
Lsp1109I GCAGC 1 cut(s) 546
LweI GCATC 1 cut(s) 546
MaeI CTAG 4 cut(s) 42, 68, 308, 326
MaeIII GTNAC 1 cut(s) 160
MalI GATC 2 cut(s) 60, 462
MbiI CCGCTC 1 cut(s) 213
MboI GATC 2 cut(s) 58, 460
MboII GAAGA 4 cut(s) 68, 434, 758, 767
MflI RGATCY 1 cut(s) 58
MluCI AATT 7 cut(s) 148, 198, 228, 431, 601, 668, 749
MlyI GAGTC 1 cut(s) 433
MnlI CCTC 4 cut(s) 300, 430, 513, 574
MseI TTAA 2 cut(s) 284, 710
MslI CAYNNNNRTG 2 cut(s) 468, 575
MspR9I CCNGG 2 cut(s) 278, 564
MvaI CCWGG 2 cut(s) 278, 564
MwoI GCNNNNNNNGC 1 cut(s) 634
NdeI CATATG 1 cut(s) 410
NdeII GATC 2 cut(s) 58, 460
NlaIII CATG 2 cut(s) 494, 628
NlaIV GGNNCC 3 cut(s) 86, 416, 568
NspI RCATGY 1 cut(s) 494
PfeI GAWTC 3 cut(s) 142, 389, 516
PkrI GCNGC 1 cut(s) 561
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
Psp6I CCWGG 2 cut(s) 276, 562
PspFI CCCAGC 1 cut(s) 374
PspGI CCWGG 2 cut(s) 276, 562
PspN4I GGNNCC 3 cut(s) 86, 416, 568
PstNI CAGNNNCTG 1 cut(s) 277
PsuI RGATCY 1 cut(s) 58
RseI CAYNNNNRTG 2 cut(s) 468, 575
SaqAI TTAA 2 cut(s) 284, 710
SatI GCNGC 1 cut(s) 560
Sau3AI GATC 2 cut(s) 58, 460
SchI GAGTC 1 cut(s) 433
ScrFI CCNGG 2 cut(s) 278, 564
SetI ASST 8 cut(s) 69, 221, 237, 292, 529, 546, 585, 634
SfaNI GCATC 1 cut(s) 546
SmiMI CAYNNNNRTG 2 cut(s) 468, 575
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 7 cut(s) 148, 198, 228, 431, 601, 668, 749
SsiI CCGC 2 cut(s) 127, 211
SspI AATATT 1 cut(s) 689
SspMI CTAG 4 cut(s) 42, 68, 308, 326
StyD4I CCNGG 2 cut(s) 276, 562
StyI CCWWGG 1 cut(s) 632
TaqI TCGA 2 cut(s) 459, 661
TasI AATT 7 cut(s) 148, 198, 228, 431, 601, 668, 749
TfiI GAWTC 3 cut(s) 142, 389, 516
Tru1I TTAA 2 cut(s) 284, 710
Tru9I TTAA 2 cut(s) 284, 710
TscAI CASTG 1 cut(s) 58
TseI GCWGC 1 cut(s) 559
TspDTI ATGAA 3 cut(s) 287, 681, 759
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 1 cut(s) 58
XagI CCTNNNNNAGG 1 cut(s) 424
XapI RAATTY 4 cut(s) 431, 601, 668, 749
XceI RCATGY 1 cut(s) 494
XspI CTAG 4 cut(s) 42, 68, 308, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.