Rorug01G0174400

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000234
Physical Location & Seq
Forward (+)
23789043 .. 23789279
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0174400.1

Sequence Viewer

Length: 237 bp
ATGGATCCGCAAACCAGAGACGTCGCCGAGCTGCAGTCCCCCAGTCCAGAAATTAGTCTCTCTCGTCAAGGCTCTGAGAAGAAAGCCGAATCCTCGACTCCCCCTAATCGCCGGTGCCAATCTGTCCTCAAAACATGTGCACTGCCCTACGCAAACCTTGCCCTGACGAAGAATCTTGCCGGTATTAGATCAGCCAGCCATCGAAGGGAGCCCGCCGCCGTTCTGCTCAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.47

Weight (kDa)

9.78

Isoelectric Point (pI)

86.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
AccB1I GGYRCC 1 cut(s) 114
AciI CCGC 3 cut(s) 8, 213, 216
AclWI GGATC 1 cut(s) 12
AcyI GRCGYC 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 205
AflIII ACRYGT 1 cut(s) 134
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw21I GWGCWC 1 cut(s) 142
Alw26I GTCTC 2 cut(s) 12, 62
Alw44I GTGCAC 1 cut(s) 138
AlwI GGATC 1 cut(s) 12
ApaLI GTGCAC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 31
BaeGI GKGCMC 1 cut(s) 142
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 114
BanII GRGCYC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 18
BccI CCATC 1 cut(s) 207
BceAI ACGGC 1 cut(s) 203
BcoDI GTCTC 2 cut(s) 12, 62
BfaI CTAG 1 cut(s) 235
BfmI CTRYAG 1 cut(s) 32
BisI GCNGC 2 cut(s) 32, 216
BlsI GCNGC 2 cut(s) 33, 217
BmiI GGNNCC 3 cut(s) 6, 116, 210
BmrI ACTGGG 1 cut(s) 36
BmuI ACTGGG 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse118I RCCGGY 2 cut(s) 111, 179
Bse1I ACTGG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 42
BseSI GKGCMC 1 cut(s) 142
BseXI GCAGC 1 cut(s) 18
BshNI GGYRCC 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 142
BsiSI CCGG 2 cut(s) 112, 180
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 2 cut(s) 12, 62
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 22
Bsp1286I GDGCHC 2 cut(s) 142, 213
Bsp143I GATC 2 cut(s) 4, 188
BspACI CCGC 3 cut(s) 8, 213, 216
BspCNI CTCAG 1 cut(s) 67
BspLI GGNNCC 3 cut(s) 6, 116, 210
BspMAI CTGCAG 1 cut(s) 36
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 114
BsrFI RCCGGY 2 cut(s) 111, 179
BsrI ACTGG 1 cut(s) 42
BssAI RCCGGY 2 cut(s) 111, 179
BssMI GATC 2 cut(s) 4, 188
BssNI GRCGYC 1 cut(s) 21
BstACI GRCGYC 1 cut(s) 21
BstAPI GCANNNNNTGC 1 cut(s) 158
BstC8I GCNNGC 2 cut(s) 196, 213
BstDEI CTNAG 1 cut(s) 75
BstKTI GATC 2 cut(s) 7, 191
BstMAI GTCTC 2 cut(s) 12, 62
BstMBI GATC 2 cut(s) 4, 188
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 140
Cac8I GCNNGC 2 cut(s) 196, 213
Cfr10I RCCGGY 2 cut(s) 111, 179
CviAII CATG 1 cut(s) 135
CviJI RGCY 6 cut(s) 31, 72, 86, 194, 198, 211
CviKI_1 RGCY 6 cut(s) 31, 72, 86, 194, 198, 211
DdeI CTNAG 1 cut(s) 75
DpnI GATC 2 cut(s) 6, 190
DpnII GATC 2 cut(s) 4, 188
Eco24I GRGCYC 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 213
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 1 cut(s) 138
FaiI YATR 1 cut(s) 136
FaqI GGGAC 1 cut(s) 22
FatI CATG 1 cut(s) 134
FauI CCCGC 1 cut(s) 220
Fnu4HI GCNGC 2 cut(s) 32, 216
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 2 cut(s) 32, 216
FspBI CTAG 1 cut(s) 235
GluI GCNGC 2 cut(s) 32, 216
HapII CCGG 2 cut(s) 112, 180
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 1 cut(s) 138
HinfI GANTC 3 cut(s) 89, 97, 172
HpaII CCGG 2 cut(s) 112, 180
Hpy166II GTNNAC 1 cut(s) 140
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 1 cut(s) 140
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 198
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 2 cut(s) 34, 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 1 cut(s) 138
Kzo9I GATC 2 cut(s) 4, 188
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 7 cut(s) 28, 55, 60, 125, 176, 193, 208
Lsp1109I GCAGC 1 cut(s) 18
MaeI CTAG 1 cut(s) 235
MaeII ACGT 1 cut(s) 21
MalI GATC 2 cut(s) 6, 190
MboI GATC 2 cut(s) 4, 188
MboII GAAGA 2 cut(s) 91, 181
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 142, 213
MluCI AATT 1 cut(s) 51
MlyI GAGTC 1 cut(s) 91
MnlI CCTC 2 cut(s) 103, 137
MspI CCGG 2 cut(s) 112, 180
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 2 cut(s) 4, 188
NlaIII CATG 1 cut(s) 138
NlaIV GGNNCC 3 cut(s) 6, 116, 210
NmeAIII GCCGAG 1 cut(s) 52
NspI RCATGY 1 cut(s) 138
PciI ACATGT 1 cut(s) 134
PfeI GAWTC 2 cut(s) 89, 172
PkrI GCNGC 2 cut(s) 33, 217
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PscI ACATGT 1 cut(s) 134
PspN4I GGNNCC 3 cut(s) 6, 116, 210
PstI CTGCAG 1 cut(s) 36
PsuI RGATCY 1 cut(s) 4
SatI GCNGC 2 cut(s) 32, 216
Sau3AI GATC 2 cut(s) 4, 188
SchI GAGTC 1 cut(s) 91
SduI GDGCHC 2 cut(s) 142, 213
SetI ASST 3 cut(s) 24, 33, 159
SfcI CTRYAG 1 cut(s) 32
SgrAI CRCCGGYG 1 cut(s) 111
Sse9I AATT 1 cut(s) 51
SsiI CCGC 3 cut(s) 8, 213, 216
SspMI CTAG 1 cut(s) 235
TaiI ACGT 1 cut(s) 24
TaqI TCGA 2 cut(s) 95, 202
TasI AATT 1 cut(s) 51
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 2 cut(s) 89, 172
TscAI CASTG 1 cut(s) 147
TseI GCWGC 1 cut(s) 31
TspRI CASTG 1 cut(s) 147
VneI GTGCAC 1 cut(s) 138
XceI RCATGY 1 cut(s) 138
XspI CTAG 1 cut(s) 235
ZraI GACGTC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.