pycom11g17570

F-box protein CPR30-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000234
Physical Location & Seq
Reverse (-)
19798639 .. 19799338
700 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g17570.2

Sequence Viewer

Length: 657 bp
ATGAGAAATCTACGCTGGAAGGCCTTCAATCACATTCCCGAAAAAACCTTGATCGGTATACTAGTAAGACTACCCGTAAAATCCCTTTTTCGGTTTTTGTGTGTATGTAAGTTATGGGGTAGTTTGATTGGAAGCTCAGGTTTTATTGGCACCCATCTTAATAGTAATGTCACAAAGCATGCCCATACTTTTCGTATCATTGGACATTCCTTGGGGATGAAAAAACGTTTTCAGATACACGGTTCAAGTAATGGTTTATTATGTCCGTCAGATGATCCATTGCGATATTACAGTCCTATATGGATATGCAACCCATCAATAAAGAAATTTGTGCACCTTCCTACAGCCACCATTCCATTCCGAATCCTTTCGAGGAATTCCAATGTTCTTGCATTCGGGTTCCATTCCAGGCTTAATGATTGCAAGGTGGTTAGGATGGTGAACTTTCAGGATTATAAGAAAAGTTGCTTTGAAGTGGAAATTTACTGTATAAGCACGAACTCGTGGAAGAGGATTCAGGCAATTCCTCATTTGATAAAGACCATGTGGTGGCATTCTGGTTCTGCATTTCACAATGGAGTAGCATATAGAATTATGGCTAAGGCAATTTCCATCTTGTGTCTTTTGATACAGGGACTGAAGTTTTCGAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

219

Amino Acids

25.02

Weight (kDa)

10.26

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 456
AccB1I GGYRCC 1 cut(s) 149
AccB7I CCANNNNNTGG 1 cut(s) 549
AccI GTMKAC 1 cut(s) 58
AclI AACGTT 1 cut(s) 226
AclWI GGATC 1 cut(s) 269
AcsI RAATTY 3 cut(s) 326, 376, 480
AfiI CCNNNNNNNGG 2 cut(s) 90, 549
AgsI TTSAA 3 cut(s) 28, 246, 473
AhlI ACTAGT 1 cut(s) 61
AjnI CCWGG 1 cut(s) 407
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
Alw21I GWGCWC 1 cut(s) 336
Alw44I GTGCAC 1 cut(s) 332
AlwI GGATC 1 cut(s) 269
AlwNI CAGNNNCTG 1 cut(s) 637
AoxI GGCC 1 cut(s) 21
ApaLI GTGCAC 1 cut(s) 332
ApoI RAATTY 3 cut(s) 326, 376, 480
Asp700I GAANNNNTTC 2 cut(s) 23, 367
AsuHPI GGTGA 1 cut(s) 451
AsuII TTCGAA 1 cut(s) 647
BaeGI GKGCMC 1 cut(s) 336
BanI GGYRCC 1 cut(s) 149
BauI CACGAG 1 cut(s) 502
Bbv12I GWGCWC 1 cut(s) 336
BccI CCATC 4 cut(s) 162, 322, 430, 620
BciT130I CCWGG 1 cut(s) 409
BcuI ACTAGT 1 cut(s) 61
BfaI CTAG 1 cut(s) 62
BfmI CTRYAG 1 cut(s) 342
Bme1390I CCNGG 1 cut(s) 409
BmiI GGNNCC 2 cut(s) 151, 401
BmrFI CCNGG 1 cut(s) 409
Bpu10I CCTNAGC 2 cut(s) 136, 600
Bpu14I TTCGAA 1 cut(s) 647
BsaJI CCNNGG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 549
Bse3DI GCAATG 1 cut(s) 278
BseBI CCWGG 1 cut(s) 409
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 2 cut(s) 222, 441
BseLI CCNNNNNNNGG 2 cut(s) 90, 549
BseMI GCAATG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 150
BseSI GKGCMC 1 cut(s) 336
BshFI GGCC 1 cut(s) 23
BshNI GGYRCC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 336
BslFI GGGAC 1 cut(s) 648
BslI CCNNNNNNNGG 2 cut(s) 90, 549
BsmFI GGGAC 1 cut(s) 648
BsmI GAATGC 2 cut(s) 392, 553
BsnI GGCC 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 647
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 2 cut(s) 51, 274
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 149
BspLI GGNNCC 2 cut(s) 151, 401
BspPI GGATC 1 cut(s) 269
BspT104I TTCGAA 1 cut(s) 647
BspT107I GGYRCC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 51, 274
BssNAI GTATAC 1 cut(s) 59
BssSI CACGAG 1 cut(s) 502
BssT1I CCWWGG 1 cut(s) 210
Bst1107I GTATAC 1 cut(s) 59
Bst2BI CACGAG 1 cut(s) 502
Bst2UI CCWGG 1 cut(s) 409
Bst4CI ACNGT 3 cut(s) 242, 293, 488
Bst6I CTCTTC 1 cut(s) 503
BstBI TTCGAA 1 cut(s) 647
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 136, 600
BstF5I GGATG 2 cut(s) 222, 441
BstKTI GATC 2 cut(s) 54, 277
BstMBI GATC 2 cut(s) 51, 274
BstNI CCWGG 1 cut(s) 409
BstNSI RCATGY 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 407
BstSFI CTRYAG 1 cut(s) 342
BstSLI GKGCMC 1 cut(s) 336
BstZ17I GTATAC 1 cut(s) 59
BsuRI GGCC 1 cut(s) 23
BtsCI GGATG 2 cut(s) 222, 441
Cac8I GCNNGC 1 cut(s) 180
CaiI CAGNNNCTG 1 cut(s) 637
CviAII CATG 2 cut(s) 179, 544
CviJI RGCY 5 cut(s) 23, 135, 347, 412, 599
CviKI_1 RGCY 5 cut(s) 23, 135, 347, 412, 599
DdeI CTNAG 2 cut(s) 136, 600
DpnI GATC 2 cut(s) 53, 276
DpnII GATC 2 cut(s) 51, 274
Eam1104I CTCTTC 1 cut(s) 503
EarI CTCTTC 1 cut(s) 503
Eco130I CCWWGG 1 cut(s) 210
Eco147I AGGCCT 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 407
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 2 cut(s) 182, 547
FaqI GGGAC 1 cut(s) 648
FatI CATG 2 cut(s) 178, 543
FblI GTMKAC 1 cut(s) 58
FokI GGATG 2 cut(s) 229, 448
FspBI CTAG 1 cut(s) 62
HaeIII GGCC 1 cut(s) 23
Hin1II CATG 2 cut(s) 182, 547
HinfI GANTC 2 cut(s) 363, 514
HphI GGTGA 1 cut(s) 451
Hpy166II GTNNAC 3 cut(s) 59, 334, 442
Hpy188I TCNGA 3 cut(s) 234, 271, 362
Hpy188III TCNNGA 2 cut(s) 38, 449
Hpy8I GTNNAC 3 cut(s) 59, 334, 442
HpyAV CCTTC 3 cut(s) 13, 34, 347
HpyCH4III ACNGT 3 cut(s) 242, 293, 488
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 5 cut(s) 309, 334, 392, 423, 566
HpyF3I CTNAG 2 cut(s) 136, 600
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 2 cut(s) 182, 547
Kzo9I GATC 2 cut(s) 51, 274
LpnPI CCDG 7 cut(s) 123, 394, 421, 434, 503, 543, 617
MaeI CTAG 1 cut(s) 62
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 1 cut(s) 169
MalI GATC 2 cut(s) 53, 276
MboI GATC 2 cut(s) 51, 274
MboII GAAGA 1 cut(s) 520
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 7 cut(s) 326, 376, 480, 522, 591, 606, 652
MnlI CCTC 3 cut(s) 366, 504, 537
MroXI GAANNNNTTC 2 cut(s) 23, 367
MseI TTAA 2 cut(s) 159, 414
MspR9I CCNGG 1 cut(s) 409
Mva1269I GAATGC 2 cut(s) 392, 553
MvaI CCWGG 1 cut(s) 409
NdeII GATC 2 cut(s) 51, 274
NlaIII CATG 2 cut(s) 182, 547
NlaIV GGNNCC 2 cut(s) 151, 401
NmuCI GTSAC 1 cut(s) 169
NspI RCATGY 1 cut(s) 182
NspV TTCGAA 1 cut(s) 647
PaeI GCATGC 1 cut(s) 182
PceI AGGCCT 1 cut(s) 23
PctI GAATGC 2 cut(s) 392, 553
PdmI GAANNNNTTC 2 cut(s) 23, 367
PfeI GAWTC 2 cut(s) 363, 514
PflMI CCANNNNNTGG 1 cut(s) 549
PsiI TTATAA 1 cut(s) 456
Psp1406I AACGTT 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 407
PspGI CCWGG 1 cut(s) 407
PspN4I GGNNCC 2 cut(s) 151, 401
PstNI CAGNNNCTG 1 cut(s) 637
SaqAI TTAA 2 cut(s) 159, 414
Sau3AI GATC 2 cut(s) 51, 274
ScrFI CCNGG 1 cut(s) 409
SduI GDGCHC 1 cut(s) 336
SetI ASST 6 cut(s) 50, 137, 142, 229, 339, 429
SfcI CTRYAG 1 cut(s) 342
SfuI TTCGAA 1 cut(s) 647
SpeI ACTAGT 1 cut(s) 61
SphI GCATGC 1 cut(s) 182
Sse9I AATT 7 cut(s) 326, 376, 480, 522, 591, 606, 652
SseBI AGGCCT 1 cut(s) 23
SspMI CTAG 1 cut(s) 62
StuI AGGCCT 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 407
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 3 cut(s) 242, 293, 488
TaiI ACGT 1 cut(s) 229
TaqI TCGA 2 cut(s) 371, 647
TasI AATT 7 cut(s) 326, 376, 480, 522, 591, 606, 652
TfiI GAWTC 2 cut(s) 363, 514
Tru1I TTAA 2 cut(s) 159, 414
Tru9I TTAA 2 cut(s) 159, 414
TseFI GTSAC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 1 cut(s) 233
TspGWI ACGGA 1 cut(s) 255
Van91I CCANNNNNTGG 1 cut(s) 549
VneI GTGCAC 1 cut(s) 332
XapI RAATTY 3 cut(s) 326, 376, 480
XceI RCATGY 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 58
XmnI GAANNNNTTC 2 cut(s) 23, 367
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.