RchiOBHm_Chr1g0321721

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000234
Physical Location & Seq
Forward (+)
9200440 .. 9201571
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55175

Sequence Viewer

Length: 1059 bp
ATGAAGGACTCGCATACGAAAAATTTCATATGTGAAGATATCTTGATTAACATTTTAGCAAGACTGCCTGCCAAATCCCTCGTACGGTTTATGTGTGTATGCAAGTCATGGAGTAATTTGATTGGCAGCTCAAGCTTTATTACCACACATCTCAACAGGAACATCAAAAATCATGATCATCTCTTCCTAATTTCTCACCACTATTATAGAGGCGGCCGCTCACTCATCTCACTTTCTTCTAATGAAACATTTGAGCAGTGCTTGGAGTTACAACATCCCTCGTGGACCAAAGAACGCTGTAGAGTATATGGTTCAAGCAATGGTTTAGTTTGTATTTCTGATCAAAAATTGAGTTCAACGAGTTCTATATGCATATGGAACCCATCTATTAGAAAATCTATATCTCTTCCCAAGACCTGCATCCCAGATCATAGCCGCTTATTTTCAAGAAGCTATCTGTCATTCTGCTTTCACCCAAATCATAATGATTACAAGGTGGTAAAGATGTTGCATGAACGGAAAAAGCGTTCCATGGAAGTTGAGGTGTATAGTCTTAGCACCAACTCCTGGAAGATGATTGAAATTACTCCTTGGTTTAATTCTACATGGAATTTCATAGGTCATGAGGTTTGCAATGGAATAGTATATTGGCTGATTTTTGAAGATTATTATAGGATTGTGTCCTTTGATACAAGGAGCGAAAAATTTGATGAGTTGGTGGTTCCAGATCCCATACCGCCTGTTAAGGGTGATGTCATTATTCAACTGTACAAGGAAACCATATGCCTGCTTCAAGGTCATAAGGACGTTGATTTATGGGTTCTGCAAGAAGGGTCTTTTCAAAGGCTGCGTACTATTTTTCTGCCTGAAGCAAATAATTTCCGACTAATAGGCTTATTTACAGATAATGGACTCTTGGTAAAAGAACAATCAAGATTCACTGACCTCAAGCTACAGTTGTTTGATCTTGAATCCAACCAGCTTAAAAGTACCGGAATCCTTATGTGCGATCGTAAGCGCCATACTTACATAGAAAGTCTAGTTCTACTCGATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

352

Amino Acids

41.14

Weight (kDa)

8.52

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 11 - 46 3e-10 F-box domain
F-box-like PF12937 13 - 43 1.1e-06 F-box-like
FBA_3 PF08268 75 - 333 1.2e-23 F-box associated beta propeller domain
FBA_1 PF07734 85 - 274 1.9e-14 F-box associated beta propeller domain
Beta-prop_KIB1-4 PF03478 85 - 254 9.3e-09 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 425
AccB7I CCANNNNNTGG 1 cut(s) 567
AccBSI CCGCTC 1 cut(s) 219
AciI CCGC 4 cut(s) 213, 217, 436, 737
AclWI GGATC 1 cut(s) 722
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 3 cut(s) 22, 610, 704
AcuI CTGAAG 1 cut(s) 888
AfaI GTAC 4 cut(s) 84, 770, 853, 991
AfiI CCNNNNNNNGG 3 cut(s) 84, 567, 746
AgsI TTSAA 9 cut(s) 315, 357, 447, 581, 662, 764, 794, 842, 971
AjnI CCWGG 1 cut(s) 566
AjuI GAANNNNNNNTTGG 2 cut(s) 631, 663
AloI GAACNNNNNNTCC 2 cut(s) 511, 543
AluBI AGCT 5 cut(s) 129, 135, 453, 952, 982
AluI AGCT 5 cut(s) 129, 135, 453, 952, 982
AlwI GGATC 1 cut(s) 722
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 2 cut(s) 126, 847
ApoI RAATTY 3 cut(s) 22, 610, 704
Asp700I GAANNNNTTC 1 cut(s) 23
AspLEI GCGC 1 cut(s) 1020
AspS9I GGNCC 1 cut(s) 285
AsuHPI GGTGA 3 cut(s) 188, 464, 761
AvaII GGWCC 1 cut(s) 285
BauI CACGAG 1 cut(s) 280
BbvI GCAGC 2 cut(s) 138, 834
BccI CCATC 1 cut(s) 391
BciT130I CCWGG 1 cut(s) 568
BclI TGATCA 2 cut(s) 175, 340
BfaI CTAG 1 cut(s) 1040
BfmI CTRYAG 2 cut(s) 298, 953
BfoI RGCGCY 1 cut(s) 1021
BfuAI ACCTGC 1 cut(s) 425
BisI GCNGC 5 cut(s) 127, 214, 217, 436, 848
BlsI GCNGC 5 cut(s) 128, 215, 218, 437, 849
Bme1390I CCNGG 1 cut(s) 568
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 285
BmiI GGNNCC 2 cut(s) 380, 723
BmrFI CCNGG 1 cut(s) 568
BmsI GCATC 1 cut(s) 429
BpuEI CTTGAG 2 cut(s) 115, 932
BsaJI CCNNGG 2 cut(s) 531, 590
BsaWI WCCGGW 1 cut(s) 992
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 567, 746
Bse3DI GCAATG 2 cut(s) 325, 640
BseBI CCWGG 1 cut(s) 568
BseDI CCNNGG 2 cut(s) 531, 590
BseGI GGATG 2 cut(s) 274, 420
BseLI CCNNNNNNNGG 3 cut(s) 84, 567, 746
BseMI GCAATG 2 cut(s) 325, 640
BseX3I CGGCCG 1 cut(s) 214
BseXI GCAGC 2 cut(s) 138, 834
Bsh1285I CGRYCG 2 cut(s) 217, 1012
BshFI GGCC 1 cut(s) 216
BsiEI CGRYCG 2 cut(s) 217, 1012
BsiSI CCGG 1 cut(s) 993
BsiWI CGTACG 1 cut(s) 82
BslI CCNNNNNNNGG 3 cut(s) 84, 567, 746
BsnI GGCC 1 cut(s) 216
Bsp1407I TGTACA 1 cut(s) 768
Bsp143I GATC 7 cut(s) 175, 340, 427, 727, 964, 1009, 1051
Bsp19I CCATGG 1 cut(s) 531
BspACI CCGC 4 cut(s) 213, 217, 436, 737
BspANI GGCC 1 cut(s) 216
BspHI TCATGA 2 cut(s) 172, 622
BspLI GGNNCC 2 cut(s) 380, 723
BspMI ACCTGC 1 cut(s) 425
BspPI GGATC 1 cut(s) 722
BsrBI CCGCTC 1 cut(s) 219
BsrDI GCAATG 2 cut(s) 325, 640
BsrGI TGTACA 1 cut(s) 768
BssECI CCNNGG 2 cut(s) 531, 590
BssMI GATC 7 cut(s) 175, 340, 427, 727, 964, 1009, 1051
BssSI CACGAG 1 cut(s) 280
BssT1I CCWWGG 2 cut(s) 531, 590
Bst2BI CACGAG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 568
Bst4CI ACNGT 3 cut(s) 87, 768, 957
Bst6I CTCTTC 2 cut(s) 188, 411
BstAUI TGTACA 1 cut(s) 768
BstC8I GCNNGC 2 cut(s) 69, 788
BstDEI CTNAG 1 cut(s) 554
BstDSI CCRYGG 1 cut(s) 531
BstF5I GGATG 2 cut(s) 274, 420
BstH2I RGCGCY 1 cut(s) 1021
BstHHI GCGC 1 cut(s) 1020
BstKTI GATC 7 cut(s) 178, 343, 430, 730, 967, 1012, 1054
BstMBI GATC 7 cut(s) 175, 340, 427, 727, 964, 1009, 1051
BstMCI CGRYCG 2 cut(s) 217, 1012
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 1 cut(s) 568
BstSCI CCNGG 1 cut(s) 566
BstSFI CTRYAG 2 cut(s) 298, 953
BstV1I GCAGC 2 cut(s) 138, 834
BstX2I RGATCY 1 cut(s) 727
BstYI RGATCY 1 cut(s) 727
BstZI CGGCCG 1 cut(s) 214
BsuRI GGCC 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 531
BtsCI GGATG 2 cut(s) 274, 420
BtsI GCAGTG 1 cut(s) 263
BtsIMutI CAGTG 2 cut(s) 263, 939
BveI ACCTGC 1 cut(s) 425
Cac8I GCNNGC 2 cut(s) 69, 788
CciI TCATGA 2 cut(s) 172, 622
CciNI GCGGCCGC 1 cut(s) 214
CfoI GCGC 1 cut(s) 1020
Cfr13I GGNCC 1 cut(s) 285
Csp6I GTAC 4 cut(s) 83, 769, 852, 990
CviAII CATG 6 cut(s) 108, 173, 512, 532, 606, 623
CviQI GTAC 4 cut(s) 83, 769, 852, 990
DdeI CTNAG 1 cut(s) 554
DpnI GATC 7 cut(s) 177, 342, 429, 729, 966, 1011, 1053
DpnII GATC 7 cut(s) 175, 340, 427, 727, 964, 1009, 1051
EaeI YGGCCR 1 cut(s) 214
EagI CGGCCG 1 cut(s) 214
Eam1104I CTCTTC 2 cut(s) 188, 411
EarI CTCTTC 2 cut(s) 188, 411
EclXI CGGCCG 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 531, 590
Eco32I GATATC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 285
Eco52I CGGCCG 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 888
EcoRII CCWGG 1 cut(s) 566
EcoRV GATATC 1 cut(s) 40
EcoT14I CCWWGG 2 cut(s) 531, 590
EcoT22I ATGCAT 1 cut(s) 374
ErhI CCWWGG 2 cut(s) 531, 590
FaeI CATG 6 cut(s) 111, 176, 515, 535, 609, 626
FatI CATG 6 cut(s) 107, 172, 511, 531, 605, 622
FauNDI CATATG 3 cut(s) 29, 374, 782
FbaI TGATCA 2 cut(s) 175, 340
Fnu4HI GCNGC 5 cut(s) 127, 214, 217, 436, 848
FokI GGATG 2 cut(s) 261, 407
Fsp4HI GCNGC 5 cut(s) 127, 214, 217, 436, 848
FspBI CTAG 1 cut(s) 1040
GlaI GCGC 1 cut(s) 1019
GluI GCNGC 5 cut(s) 127, 214, 217, 436, 848
HaeII RGCGCY 1 cut(s) 1021
HaeIII GGCC 1 cut(s) 216
HapII CCGG 1 cut(s) 993
HhaI GCGC 1 cut(s) 1020
Hin1II CATG 6 cut(s) 111, 176, 515, 535, 609, 626
Hin6I GCGC 1 cut(s) 1018
HinP1I GCGC 1 cut(s) 1018
HindIII AAGCTT 1 cut(s) 133
HinfI GANTC 5 cut(s) 8, 912, 936, 971, 996
HpaII CCGG 1 cut(s) 993
HphI GGTGA 3 cut(s) 188, 464, 761
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 2 cut(s) 340, 884
Hpy188III TCNNGA 7 cut(s) 43, 173, 447, 623, 725, 933, 968
Hpy8I GTNNAC 1 cut(s) 285
HpyAV CCTTC 1 cut(s) 824
HpyCH4III ACNGT 3 cut(s) 87, 768, 957
HpyCH4IV ACGT 1 cut(s) 807
HpyCH4V TGCA 6 cut(s) 102, 372, 420, 511, 633, 826
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 1 cut(s) 554
HpySE526I ACGT 1 cut(s) 807
Hsp92II CATG 6 cut(s) 111, 176, 515, 535, 609, 626
HspAI GCGC 1 cut(s) 1018
Ksp22I TGATCA 2 cut(s) 175, 340
Kzo9I GATC 7 cut(s) 175, 340, 427, 727, 964, 1009, 1051
LmnI GCTCC 1 cut(s) 696
Lsp1109I GCAGC 2 cut(s) 138, 834
LweI GCATC 1 cut(s) 429
MaeI CTAG 1 cut(s) 1040
MaeII ACGT 1 cut(s) 807
MaeIII GTNAC 1 cut(s) 267
MalI GATC 7 cut(s) 177, 342, 429, 729, 966, 1011, 1053
MbiI CCGCTC 1 cut(s) 219
MboI GATC 7 cut(s) 175, 340, 427, 727, 964, 1009, 1051
MboII GAAGA 6 cut(s) 47, 175, 228, 398, 583, 674
MflI RGATCY 1 cut(s) 727
MluCI AATT 9 cut(s) 22, 115, 189, 347, 582, 598, 610, 704, 877
MlyI GAGTC 2 cut(s) 2, 906
MmeI TCCRAC 2 cut(s) 907, 999
MnlI CCTC 6 cut(s) 89, 203, 289, 535, 619, 956
Mph1103I ATGCAT 1 cut(s) 374
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 4 cut(s) 48, 597, 744, 984
MspI CCGG 1 cut(s) 993
MspR9I CCNGG 1 cut(s) 568
MvaI CCWGG 1 cut(s) 568
MwoI GCNNNNNNNGC 1 cut(s) 132
NcoI CCATGG 1 cut(s) 531
NdeI CATATG 3 cut(s) 29, 374, 782
NdeII GATC 7 cut(s) 175, 340, 427, 727, 964, 1009, 1051
NlaIII CATG 6 cut(s) 111, 176, 515, 535, 609, 626
NlaIV GGNNCC 2 cut(s) 380, 723
NotI GCGGCCGC 1 cut(s) 214
NsiI ATGCAT 1 cut(s) 374
PagI TCATGA 2 cut(s) 172, 622
PcsI WCGNNNNNNNCGW 1 cut(s) 523
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 3 cut(s) 936, 971, 996
Pfl23II CGTACG 1 cut(s) 82
PflMI CCANNNNNTGG 1 cut(s) 567
PfoI TCCNGGA 1 cut(s) 566
PkrI GCNGC 5 cut(s) 128, 215, 218, 437, 849
Ple19I CGATCG 1 cut(s) 1012
PleI GAGTC 2 cut(s) 2, 906
PpsI GAGTC 2 cut(s) 2, 906
Psp6I CCWGG 1 cut(s) 566
PspGI CCWGG 1 cut(s) 566
PspLI CGTACG 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 380, 723
PspPI GGNCC 1 cut(s) 285
PsuI RGATCY 1 cut(s) 727
PvuI CGATCG 1 cut(s) 1012
RsaI GTAC 4 cut(s) 84, 770, 853, 991
RsaNI GTAC 4 cut(s) 83, 769, 852, 990
SaqAI TTAA 4 cut(s) 48, 597, 744, 984
SatI GCNGC 5 cut(s) 127, 214, 217, 436, 848
Sau3AI GATC 7 cut(s) 175, 340, 427, 727, 964, 1009, 1051
Sau96I GGNCC 1 cut(s) 285
SchI GAGTC 2 cut(s) 2, 906
ScrFI CCNGG 1 cut(s) 568
SfaNI GCATC 1 cut(s) 429
SfcI CTRYAG 2 cut(s) 298, 953
SinI GGWCC 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 130, 947
SmoI CTYRAG 2 cut(s) 130, 947
Sse9I AATT 9 cut(s) 22, 115, 189, 347, 582, 598, 610, 704, 877
SsiI CCGC 4 cut(s) 213, 217, 436, 737
SspMI CTAG 1 cut(s) 1040
StyD4I CCNGG 1 cut(s) 566
StyI CCWWGG 2 cut(s) 531, 590
TaaI ACNGT 3 cut(s) 87, 768, 957
TaiI ACGT 1 cut(s) 810
TaqI TCGA 1 cut(s) 1050
TasI AATT 9 cut(s) 22, 115, 189, 347, 582, 598, 610, 704, 877
TatI WGTACW 1 cut(s) 768
TauI GCSGC 3 cut(s) 216, 219, 438
TfiI GAWTC 3 cut(s) 936, 971, 996
Tru1I TTAA 4 cut(s) 48, 597, 744, 984
Tru9I TTAA 4 cut(s) 48, 597, 744, 984
TscAI CASTG 2 cut(s) 263, 946
TseI GCWGC 2 cut(s) 126, 847
TspDTI ATGAA 5 cut(s) 16, 17, 258, 528, 604
TspGWI ACGGA 1 cut(s) 532
TspRI CASTG 2 cut(s) 263, 946
Van91I CCANNNNNTGG 1 cut(s) 567
VpaK11BI GGWCC 1 cut(s) 285
XapI RAATTY 3 cut(s) 22, 610, 704
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 1 cut(s) 1040
Zsp2I ATGCAT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.