Rroxscaffold_7G00163600

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000234
Physical Location & Seq
Reverse (-)
5790626 .. 5791576
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00163600.1

Sequence Viewer

Length: 924 bp
ATGAAAAATTCTTCCGATTATCTACTTATCCGCAGTACGGAGATTGATTGCATGTCACGCATTTGTGCTAGAACATTTGCTAGGGATTTGGATATAAAGCTTCCTGAGAATGCTGTGTACGAGTTGGGTTCTGAATTAACTGTTTATGGTTCATACAATGGGTTGCTTTGCATATCCAACAGGTATCTGTGTGTAGATAGTCCTATATACTTGTGGAGTCCATCAATTAGAAAAATCAGAAGACTTCCCTATGGCCTCATCACAAGCACCATTAATGACCACGATTATCAAGTTACTCTTGGGATGGGGTTCCGTTCTGCAGGTGGGAATGACTATAAGGTTATAAAGTTTGTGCACCATGATACTGACTCTGAAAATACTTTTCAAGTTGAGGTATACAGTCTTAATTCAAATTCTTGGAAAAGAATAAGCAGAGTTCCCCCTGTTCCACGAGATGCTTATTTTCGCCCCAAATGTGCATATTTGAACGGAGTTGTGTATTGGATTCTTTATGAGGACCTCTTGTCCATCATTTCTTTTGATGTGCACAACGAGTCATTTCGAACCAGGAGCTATAGTAGGGACTTGTTCCCACTTATGCCAACCAAACTGTATGCAAGTGCCAAAGTCGCTGAATATGATCGGAAGAATACAAGCTGCTGTGAGATATACATTCTGAACATGGTAACAAGTAAATTGGAACTATCCAGGACTCTTTGTATGGAAAGTTTTGTATCTATAGCATGGCCATTGGGGTTCAACACAAGTGGCAGTGGGAAAGACATTGATATGGTTATCAGGACTGATAGTCGACCACCAATACATGTTTCATGTACTCCTCGAGGGCACAAAATTGAACTAGGTATGTTCGAAGATTGCTGGTACGTTGATGTTTATAGAGAGAGTCTGCTTCTACTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

307

Amino Acids

35.39

Weight (kDa)

6.6

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 44 - 196 1.6e-11 F-box associated beta propeller domain
FBA_1 PF07734 51 - 190 1e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 344
AarI CACCTGC 1 cut(s) 311
AbsI CCTCGAGG 1 cut(s) 840
Acc36I ACCTGC 1 cut(s) 311
AccI GTMKAC 2 cut(s) 396, 811
AciI CCGC 1 cut(s) 31
AcoI YGGCCR 1 cut(s) 746
AcsI RAATTY 2 cut(s) 7, 412
AfaI GTAC 4 cut(s) 37, 119, 835, 884
AfiI CCNNNNNNNGG 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 823
AgsI TTSAA 5 cut(s) 386, 411, 487, 760, 857
AhdI GACNNNNNGTC 2 cut(s) 523, 807
AjnI CCWGG 2 cut(s) 566, 707
AjuI GAANNNNNNNTTGG 2 cut(s) 811, 843
AluBI AGCT 3 cut(s) 100, 573, 657
AluI AGCT 3 cut(s) 100, 573, 657
Alw21I GWGCWC 2 cut(s) 357, 549
Alw44I GTGCAC 2 cut(s) 353, 545
Ama87I CYCGRG 1 cut(s) 840
AoxI GGCC 2 cut(s) 253, 746
ApaLI GTGCAC 2 cut(s) 353, 545
ApeKI GCWGC 1 cut(s) 657
ApoI RAATTY 2 cut(s) 7, 412
AseI ATTAAT 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 517
AsuII TTCGAA 2 cut(s) 562, 870
AvaI CYCGRG 1 cut(s) 840
AvaII GGWCC 1 cut(s) 517
BaeGI GKGCMC 3 cut(s) 357, 549, 849
BalI TGGCCA 1 cut(s) 748
BauI CACGAG 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 247
Bbv12I GWGCWC 2 cut(s) 357, 549
BbvI GCAGC 1 cut(s) 644
BccI CCATC 3 cut(s) 229, 298, 536
BciT130I CCWGG 2 cut(s) 568, 709
BfaI CTAG 3 cut(s) 69, 81, 860
BfmI CTRYAG 3 cut(s) 318, 574, 738
BfuAI ACCTGC 1 cut(s) 311
BisI GCNGC 1 cut(s) 658
BlsI GCNGC 1 cut(s) 659
Bme1390I CCNGG 2 cut(s) 568, 709
Bme18I GGWCC 1 cut(s) 517
BmeRI GACNNNNNGTC 2 cut(s) 523, 807
BmeT110I CYCGRG 1 cut(s) 840
BmgT120I GGNCC 1 cut(s) 517
BmiI GGNNCC 1 cut(s) 311
BmrFI CCNGG 2 cut(s) 568, 709
BmsI GCATC 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 247
Bpu14I TTCGAA 2 cut(s) 562, 870
BsaXI ACNNNNNCTCC 2 cut(s) 562, 592
Bsc4I CCNNNNNNNGG 1 cut(s) 37
BseBI CCWGG 2 cut(s) 568, 709
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 96
BseRI GAGGAG 1 cut(s) 828
BseSI GKGCMC 3 cut(s) 357, 549, 849
BseXI GCAGC 1 cut(s) 644
BshFI GGCC 2 cut(s) 255, 748
BsiHKAI GWGCWC 2 cut(s) 357, 549
BsiHKCI CYCGRG 1 cut(s) 840
BslFI GGGAC 1 cut(s) 596
BslI CCNNNNNNNGG 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 596
BsmI GAATGC 1 cut(s) 115
BsnI GGCC 2 cut(s) 255, 748
BsoBI CYCGRG 1 cut(s) 840
Bsp119I TTCGAA 2 cut(s) 562, 870
Bsp1286I GDGCHC 3 cut(s) 357, 549, 849
Bsp143I GATC 1 cut(s) 640
BspACI CCGC 1 cut(s) 31
BspANI GGCC 2 cut(s) 255, 748
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 311
BspMAI CTGCAG 1 cut(s) 322
BspMI ACCTGC 1 cut(s) 311
BspT104I TTCGAA 2 cut(s) 562, 870
BssMI GATC 1 cut(s) 640
BssNAI GTATAC 1 cut(s) 397
BssSI CACGAG 1 cut(s) 450
Bst1107I GTATAC 1 cut(s) 397
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 2 cut(s) 568, 709
Bst4CI ACNGT 3 cut(s) 142, 401, 612
BstBI TTCGAA 2 cut(s) 562, 870
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 1 cut(s) 643
BstMBI GATC 1 cut(s) 640
BstMWI GCNNNNNNNGC 2 cut(s) 57, 629
BstNI CCWGG 2 cut(s) 568, 709
BstNSI RCATGY 2 cut(s) 55, 827
BstSCI CCNGG 2 cut(s) 566, 707
BstSFI CTRYAG 3 cut(s) 318, 574, 738
BstSLI GKGCMC 3 cut(s) 357, 549, 849
BstV1I GCAGC 1 cut(s) 644
BstV2I GAAGAC 1 cut(s) 247
BstZ17I GTATAC 1 cut(s) 397
BsuRI GGCC 2 cut(s) 255, 748
BtsCI GGATG 1 cut(s) 309
BtsI GCAGTG 1 cut(s) 778
BtsIMutI CAGTG 1 cut(s) 778
BveI ACCTGC 1 cut(s) 311
Cfr13I GGNCC 1 cut(s) 517
Csp6I GTAC 4 cut(s) 36, 118, 834, 883
CspCI CAANNNNNGTGG 2 cut(s) 748, 783
CviAII CATG 6 cut(s) 52, 359, 682, 744, 824, 831
CviJI RGCY 5 cut(s) 100, 255, 573, 657, 748
CviKI_1 RGCY 5 cut(s) 100, 255, 573, 657, 748
CviQI GTAC 4 cut(s) 36, 118, 834, 883
DdeI CTNAG 1 cut(s) 105
DpnI GATC 1 cut(s) 642
DpnII GATC 1 cut(s) 640
DriI GACNNNNNGTC 2 cut(s) 523, 807
EaeI YGGCCR 1 cut(s) 746
Eam1105I GACNNNNNGTC 2 cut(s) 523, 807
Eco47I GGWCC 1 cut(s) 517
Eco88I CYCGRG 1 cut(s) 840
EcoO109I RGGNCCY 1 cut(s) 517
EcoRII CCWGG 2 cut(s) 566, 707
FaeI CATG 6 cut(s) 55, 362, 685, 747, 827, 834
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 1 cut(s) 596
FatI CATG 6 cut(s) 51, 358, 681, 743, 823, 830
FblI GTMKAC 2 cut(s) 396, 811
Fnu4HI GCNGC 1 cut(s) 658
FokI GGATG 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 658
FspBI CTAG 3 cut(s) 69, 81, 860
GluI GCNGC 1 cut(s) 658
HaeIII GGCC 2 cut(s) 255, 748
Hin1II CATG 6 cut(s) 55, 362, 685, 747, 827, 834
HincII GTYRAC 1 cut(s) 812
HindII GTYRAC 1 cut(s) 812
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 6 cut(s) 217, 368, 505, 554, 712, 904
Hpy166II GTNNAC 5 cut(s) 118, 355, 397, 547, 812
Hpy188I TCNGA 6 cut(s) 16, 133, 239, 373, 645, 678
Hpy188III TCNNGA 2 cut(s) 104, 799
Hpy8I GTNNAC 5 cut(s) 118, 355, 397, 547, 812
HpyCH4III ACNGT 3 cut(s) 142, 401, 612
HpyCH4IV ACGT 1 cut(s) 885
HpyCH4V TGCA 7 cut(s) 51, 171, 320, 355, 479, 547, 617
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 629
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 885
Hsp92II CATG 6 cut(s) 55, 362, 685, 747, 827, 834
Kzo9I GATC 1 cut(s) 640
LmnI GCTCC 1 cut(s) 570
Lsp1109I GCAGC 1 cut(s) 644
LweI GCATC 1 cut(s) 445
MaeI CTAG 3 cut(s) 69, 81, 860
MaeII ACGT 1 cut(s) 885
MaeIII GTNAC 3 cut(s) 54, 292, 685
MalI GATC 1 cut(s) 642
MboI GATC 1 cut(s) 640
MboII GAAGA 4 cut(s) 3, 252, 658, 884
MhlI GDGCHC 3 cut(s) 357, 549, 849
MlsI TGGCCA 1 cut(s) 748
MluCI AATT 7 cut(s) 7, 134, 225, 406, 412, 695, 852
MluNI TGGCCA 1 cut(s) 748
MlyI GAGTC 5 cut(s) 226, 362, 563, 706, 913
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 6 cut(s) 266, 385, 508, 530, 836, 849
Mox20I TGGCCA 1 cut(s) 748
MscI TGGCCA 1 cut(s) 748
MseI TTAA 3 cut(s) 137, 273, 405
MslI CAYNNNNRTG 1 cut(s) 788
Msp20I TGGCCA 1 cut(s) 748
MspR9I CCNGG 2 cut(s) 568, 709
Mva1269I GAATGC 1 cut(s) 115
MvaI CCWGG 2 cut(s) 568, 709
MwoI GCNNNNNNNGC 2 cut(s) 57, 629
NdeII GATC 1 cut(s) 640
NlaIII CATG 6 cut(s) 55, 362, 685, 747, 827, 834
NlaIV GGNNCC 1 cut(s) 311
NmuCI GTSAC 1 cut(s) 54
NspI RCATGY 2 cut(s) 55, 827
NspV TTCGAA 2 cut(s) 562, 870
PaeR7I CTCGAG 1 cut(s) 840
PaqCI CACCTGC 1 cut(s) 311
PciI ACATGT 1 cut(s) 823
PctI GAATGC 1 cut(s) 115
PfeI GAWTC 1 cut(s) 505
PfoI TCCNGGA 1 cut(s) 707
PkrI GCNGC 1 cut(s) 659
PleI GAGTC 5 cut(s) 225, 362, 562, 706, 912
PpsI GAGTC 5 cut(s) 225, 362, 562, 706, 912
PpuMI RGGWCCY 1 cut(s) 517
PscI ACATGT 1 cut(s) 823
PshBI ATTAAT 1 cut(s) 273
PsiI TTATAA 1 cut(s) 344
Psp5II RGGWCCY 1 cut(s) 517
Psp6I CCWGG 2 cut(s) 566, 707
PspGI CCWGG 2 cut(s) 566, 707
PspN4I GGNNCC 1 cut(s) 311
PspPI GGNCC 1 cut(s) 517
PspPPI RGGWCCY 1 cut(s) 517
PspXI VCTCGAGB 1 cut(s) 840
PstI CTGCAG 1 cut(s) 322
RsaI GTAC 4 cut(s) 37, 119, 835, 884
RsaNI GTAC 4 cut(s) 36, 118, 834, 883
RseI CAYNNNNRTG 1 cut(s) 788
SalI GTCGAC 1 cut(s) 810
SaqAI TTAA 3 cut(s) 137, 273, 405
SatI GCNGC 1 cut(s) 658
Sau3AI GATC 1 cut(s) 640
Sau96I GGNCC 1 cut(s) 517
SchI GAGTC 5 cut(s) 226, 362, 563, 706, 913
ScrFI CCNGG 2 cut(s) 568, 709
SduI GDGCHC 3 cut(s) 357, 549, 849
SfaNI GCATC 1 cut(s) 445
SfcI CTRYAG 3 cut(s) 318, 574, 738
Sfr274I CTCGAG 1 cut(s) 840
SfuI TTCGAA 2 cut(s) 562, 870
SinI GGWCC 1 cut(s) 517
SlaI CTCGAG 1 cut(s) 840
SmiMI CAYNNNNRTG 1 cut(s) 788
SmlI CTYRAG 1 cut(s) 840
SmoI CTYRAG 1 cut(s) 840
Sse9I AATT 7 cut(s) 7, 134, 225, 406, 412, 695, 852
SsiI CCGC 1 cut(s) 31
SspMI CTAG 3 cut(s) 69, 81, 860
StyD4I CCNGG 2 cut(s) 566, 707
TaaI ACNGT 3 cut(s) 142, 401, 612
TaiI ACGT 1 cut(s) 888
TaqI TCGA 5 cut(s) 562, 811, 841, 870, 918
TasI AATT 7 cut(s) 7, 134, 225, 406, 412, 695, 852
TatI WGTACW 1 cut(s) 833
TfiI GAWTC 1 cut(s) 505
Tru1I TTAA 3 cut(s) 137, 273, 405
Tru9I TTAA 3 cut(s) 137, 273, 405
TscAI CASTG 1 cut(s) 778
TseFI GTSAC 1 cut(s) 54
TseI GCWGC 1 cut(s) 657
Tsp45I GTSAC 1 cut(s) 54
TspDTI ATGAA 3 cut(s) 17, 141, 819
TspGWI ACGGA 3 cut(s) 53, 302, 504
TspRI CASTG 1 cut(s) 778
VneI GTGCAC 2 cut(s) 353, 545
VpaK11BI GGWCC 1 cut(s) 517
VspI ATTAAT 1 cut(s) 273
XapI RAATTY 2 cut(s) 7, 412
XceI RCATGY 2 cut(s) 55, 827
XhoI CTCGAG 1 cut(s) 840
XmiI GTMKAC 2 cut(s) 396, 811
XspI CTAG 3 cut(s) 69, 81, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.