RLG00000017431

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000234
Physical Location & Seq
Reverse (-)
16661230 .. 16662631
1402 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017431

Sequence Viewer

Length: 621 bp
ATGAAAAGTAATACGAATTACGAGTATTTACTCACCGGCAGTGCTAAAAAGAAGTGCTTCTCGCTCTTTTCTGCTGAAACATATGCCAAGTGCTTGGAATTAGAGCTTCTGATTCTGGAGGACAAGTTAGGGTCATACCTCAAGATTGAGGGTTCGTGCAATGGACTGCTCTGCATCTCTACTCGTAACTTCTCTTCGAGTTGTAACAGTCCCATATATTTATGGAACCCATCCAGCAATAAATTTCGACAACTTCCTGAACGCTTAATCACTGCTCGCAGCTGTACTTATATATATCGGATTAGGGTTCCAACCTGGGGAAATGACTACAAAGTTGTGAGGATTATTGTGAAGCACGCAGAAAGTACCGGTTTTTACTGCCAAGTTGAGCTTCTGCACGTGCTCAAGTACTCAACTGATAGCCTCAGTCTTGCTAATTATGTAATGGCCGGTTACATCATTCGTAAGGGCTTTGAGGAAGATCTGGTTATCAGTAATGCACTGATAGATTTGCATTTAAGAAGTGGAAACATATCGATTGCTAGAAAGCTGTTTGATGTTAAGAAAGGTAGTGGGTCTTGGAGTGTGATAAATGGGTATAGCTTGAAATGGGAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

207

Amino Acids

23.52

Weight (kDa)

9.09

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 447
AcsI RAATTY 1 cut(s) 242
AcvI CACGTG 1 cut(s) 400
AfaI GTAC 3 cut(s) 286, 367, 410
AfiI CCNNNNNNNGG 1 cut(s) 317
AgeI ACCGGT 1 cut(s) 368
AgsI TTSAA 1 cut(s) 607
AjnI CCWGG 1 cut(s) 314
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AluBI AGCT 5 cut(s) 106, 282, 391, 550, 603
AluI AGCT 5 cut(s) 106, 282, 391, 550, 603
Alw21I GWGCWC 1 cut(s) 405
AoxI GGCC 1 cut(s) 447
ApeKI GCWGC 1 cut(s) 279
ApoI RAATTY 1 cut(s) 242
AsiGI ACCGGT 1 cut(s) 368
Asp700I GAANNNNTTC 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 25
BarI GAAGNNNNNNTAC 2 cut(s) 178, 210
BbrPI CACGTG 1 cut(s) 400
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 1 cut(s) 291
BccI CCATC 1 cut(s) 238
BciT130I CCWGG 1 cut(s) 316
BfaI CTAG 1 cut(s) 543
BglII AGATCT 1 cut(s) 481
BisI GCNGC 1 cut(s) 280
BlsI GCNGC 1 cut(s) 281
BmcAI AGTACT 1 cut(s) 410
Bme1390I CCNGG 1 cut(s) 316
BmiI GGNNCC 2 cut(s) 227, 309
BmrFI CCNGG 1 cut(s) 316
BmsI GCATC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 137
BpuEI CTTGAG 2 cut(s) 125, 389
Bsa29I ATCGAT 1 cut(s) 536
BsaAI YACGTR 1 cut(s) 400
BsaJI CCNNGG 1 cut(s) 315
BsaWI WCCGGW 1 cut(s) 368
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse118I RCCGGY 3 cut(s) 35, 368, 449
Bse3DI GCAATG 1 cut(s) 166
BseBI CCWGG 1 cut(s) 316
BseCI ATCGAT 1 cut(s) 536
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 1 cut(s) 230
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 439
BseXI GCAGC 1 cut(s) 291
BsgI GTGCAG 1 cut(s) 380
BshFI GGCC 1 cut(s) 449
BshTI ACCGGT 1 cut(s) 368
BshVI ATCGAT 1 cut(s) 536
BsiHKAI GWGCWC 1 cut(s) 405
BsiSI CCGG 3 cut(s) 36, 369, 450
BslFI GGGAC 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 317
BsmFI GGGAC 1 cut(s) 195
BsnI GGCC 1 cut(s) 449
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 1 cut(s) 481
BspANI GGCC 1 cut(s) 449
BspCNI CTCAG 1 cut(s) 438
BspDI ATCGAT 1 cut(s) 536
BspLI GGNNCC 2 cut(s) 227, 309
BsrDI GCAATG 1 cut(s) 166
BsrFI RCCGGY 3 cut(s) 35, 368, 449
BssAI RCCGGY 3 cut(s) 35, 368, 449
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 1 cut(s) 481
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 1 cut(s) 199
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 2 cut(s) 277, 357
BstDEI CTNAG 1 cut(s) 425
BstF5I GGATG 1 cut(s) 230
BstKTI GATC 1 cut(s) 484
BstMBI GATC 1 cut(s) 481
BstNI CCWGG 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 291
BstX2I RGATCY 1 cut(s) 481
BstXI CCANNNNNNTGG 1 cut(s) 94
BstYI RGATCY 1 cut(s) 481
Bsu15I ATCGAT 1 cut(s) 536
BsuRI GGCC 1 cut(s) 449
BsuTUI ATCGAT 1 cut(s) 536
BtsCI GGATG 1 cut(s) 230
BtsI GCAGTG 2 cut(s) 46, 270
BtsIMutI CAGTG 3 cut(s) 46, 270, 500
Cac8I GCNNGC 2 cut(s) 277, 357
Cfr10I RCCGGY 3 cut(s) 35, 368, 449
ClaI ATCGAT 1 cut(s) 536
Csp6I GTAC 3 cut(s) 285, 366, 409
CspAI ACCGGT 1 cut(s) 368
CviJI RGCY 8 cut(s) 106, 282, 391, 423, 449, 471, 550, 603
CviKI_1 RGCY 8 cut(s) 106, 282, 391, 423, 449, 471, 550, 603
CviQI GTAC 3 cut(s) 285, 366, 409
DdeI CTNAG 1 cut(s) 425
DpnI GATC 1 cut(s) 483
DpnII GATC 1 cut(s) 481
EaeI YGGCCR 1 cut(s) 447
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
Eco72I CACGTG 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 314
FalI AAGNNNNNCTT 4 cut(s) 41, 73, 375, 407
FaqI GGGAC 1 cut(s) 195
FauNDI CATATG 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 280
FokI GGATG 1 cut(s) 217
Fsp4HI GCNGC 1 cut(s) 280
FspBI CTAG 1 cut(s) 543
GluI GCNGC 1 cut(s) 280
GsuI CTGGAG 1 cut(s) 137
HaeIII GGCC 1 cut(s) 449
HapII CCGG 3 cut(s) 36, 369, 450
HinfI GANTC 1 cut(s) 112
HpaII CCGG 3 cut(s) 36, 369, 450
HphI GGTGA 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 111, 300
Hpy188III TCNNGA 3 cut(s) 116, 142, 257
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 5 cut(s) 159, 174, 397, 500, 514
HpyF3I CTNAG 1 cut(s) 425
HpySE526I ACGT 1 cut(s) 399
Kzo9I GATC 1 cut(s) 481
LpnPI CCDG 9 cut(s) 49, 101, 247, 270, 301, 328, 382, 463, 470
Lsp1109I GCAGC 1 cut(s) 291
LweI GCATC 1 cut(s) 183
MaeI CTAG 1 cut(s) 543
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 3 cut(s) 185, 203, 452
MalI GATC 1 cut(s) 483
MboI GATC 1 cut(s) 481
MboII GAAGA 2 cut(s) 186, 491
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 4 cut(s) 16, 98, 242, 436
MmeI TCCRAC 1 cut(s) 335
MnlI CCTC 6 cut(s) 112, 142, 149, 333, 434, 469
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 3 cut(s) 266, 518, 561
MspA1I CMGCKG 1 cut(s) 282
MspI CCGG 3 cut(s) 36, 369, 450
MspR9I CCNGG 1 cut(s) 316
MvaI CCWGG 1 cut(s) 316
NdeI CATATG 1 cut(s) 82
NdeII GATC 1 cut(s) 481
NlaIV GGNNCC 2 cut(s) 227, 309
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 112
PinAI ACCGGT 1 cut(s) 368
PkrI GCNGC 1 cut(s) 281
PmaCI CACGTG 1 cut(s) 400
PmlI CACGTG 1 cut(s) 400
Ppu21I YACGTR 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 314
PspCI CACGTG 1 cut(s) 400
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 2 cut(s) 227, 309
PsuI RGATCY 1 cut(s) 481
PvuII CAGCTG 1 cut(s) 282
RsaI GTAC 3 cut(s) 286, 367, 410
RsaNI GTAC 3 cut(s) 285, 366, 409
SaqAI TTAA 3 cut(s) 266, 518, 561
SatI GCNGC 1 cut(s) 280
Sau3AI GATC 1 cut(s) 481
ScaI AGTACT 1 cut(s) 410
ScrFI CCNGG 1 cut(s) 316
SduI GDGCHC 1 cut(s) 405
SetI ASST 9 cut(s) 108, 141, 284, 317, 393, 402, 552, 571, 605
SfaNI GCATC 1 cut(s) 183
SmlI CTYRAG 2 cut(s) 140, 404
SmoI CTYRAG 2 cut(s) 140, 404
Sse9I AATT 4 cut(s) 16, 98, 242, 436
SspMI CTAG 1 cut(s) 543
StyD4I CCNGG 1 cut(s) 314
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 1 cut(s) 402
TaqI TCGA 3 cut(s) 197, 247, 536
TasI AATT 4 cut(s) 16, 98, 242, 436
TatI WGTACW 2 cut(s) 284, 408
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 3 cut(s) 266, 518, 561
Tru9I TTAA 3 cut(s) 266, 518, 561
TscAI CASTG 3 cut(s) 46, 277, 507
TseI GCWGC 1 cut(s) 279
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 3 cut(s) 46, 277, 507
XapI RAATTY 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 1 cut(s) 543
ZrmI AGTACT 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.