MD09G1281000.v1.1

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000234
Physical Location & Seq
Forward (+)
35815145 .. 35816576
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1281000.v1.1.491

Sequence Viewer

Length: 1263 bp
ATGGTTTTAGGGATCTTTGATTTACGCATTTGTTTGGGTTCAAATGTTGGAATAATTGAATCAGAGAAGAGATGCTCAACCTTTGTTGATGAGATCCAGTTTAACGGAAGAAATCTTGTTGACATACTTGCAAGATTACCCGTGAAATCTCTTTTGCGGTTCAGATGCGTTTACAAATCTTGGAACAATTTAATTATCAGCCCTAGTTTCATAAACGCCCATCTTAAAAGTAATGTCGTGCAAAATTTTTGTAATCATCTACTCATCCACACTGACATGAGCAATTGCTTGTCACTCTTTGATGCTGAAACATTTTCCAAGCATTTGGATTTAGAGCTTCCTGGTCATGATTTTGGTTTCGTCGTTCACGGTTCGTGCAATGGATTGGTTTGCATCTCTAATTCTGCATTTATGACCTTGGAGAGTCCGGTATATCTATGGAACCCATCAATCAGAAATTTGAAAAGACTTCCCAATAGCCTTCAACATACAACTGTTTTCGTTCATCTAGGGTTTGGGTTTCATAGTGAGGTTGACAACTATAGGGTTGTGAGGGTTGCGAGATTTCTATGCAACAAAAGTATCTTTGGGATTGAGGTTTACAATATTAGACTGAATTGTTGGAGGACAATTACCACGGTGCCTCCTGTTTCAAATGATGTCAATTTTTTGCAGTCTGCGTGCGTTTTCCTGAACGGAGTTGTCTATTGGATCACAAAGGAGCCATCTCAACATAGCCCTTCCATCCTTACTTTTGATCTCGGCAGCGAGGTTTTTCAAAAGATTCTGCTTCCCGAGACAACGGTCGAAGTGCCCACTGACGTCGGTATTCAAGTGGTTGAGAACTCAGTCTCCTTATTCCAAGTAAGAACAGACAGGCTTGGCTTGTACTGTGACATAAGCGTTTTGGAAGTGAATACTTGGAAAATGATGCAGACAATTATTTTTCCATACTCTAAATTAGCATGGCCATTAGGGATGGAAGCAGATGGCAGACTTCATTTGGCTATAAAAGGCGACAATCCAGATCACCCAGAATTGGTTTTATTTGATCCCAAGTCTATCGAAATTAGGGTTACTGGAATCGGGTTGAATTGCAAGTACTTAGCCTATGTTGATGTCTATATTGAGAGTCTAATTTTACTCAACAGAAGTCTAATTTTGACTTTGGTTCCAAGTCATATTATGTATGCGTGCATATGTTTGGTAGACTATCTTGAACGCTTCATTAGCAAAATTTTAATTCGGTTTGGTGTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

421

Amino Acids

47.67

Weight (kDa)

6.49

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 39 - 70 2.2e-06 F-box domain
FBA_3 PF08268 105 - 268 8.5e-14 F-box associated beta propeller domain
FBA_1 PF07734 121 - 296 1e-21 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 825
AccB1I GGYRCC 1 cut(s) 640
AccI GTMKAC 1 cut(s) 1209
AciI CCGC 1 cut(s) 157
AclWI GGATC 4 cut(s) 20, 88, 719, 1046
AcoI YGGCCR 1 cut(s) 968
AcsI RAATTY 3 cut(s) 244, 457, 1236
AcyI GRCGYC 1 cut(s) 822
AfaI GTAC 2 cut(s) 890, 1103
AfiI CCNNNNNNNGG 1 cut(s) 1039
AgsI TTSAA 9 cut(s) 42, 59, 463, 485, 654, 779, 833, 1093, 1220
AjnI CCWGG 1 cut(s) 340
AloI GAACNNNNNNTCC 2 cut(s) 836, 868
AluBI AGCT 1 cut(s) 337
AluI AGCT 1 cut(s) 337
Alw26I GTCTC 2 cut(s) 791, 856
AlwI GGATC 4 cut(s) 20, 88, 719, 1046
Ama87I CYCGRG 1 cut(s) 794
AoxI GGCC 1 cut(s) 968
ApeKI GCWGC 1 cut(s) 765
ApoI RAATTY 3 cut(s) 244, 457, 1236
AsuHPI GGTGA 1 cut(s) 1022
AvaI CYCGRG 1 cut(s) 794
BaeGI GKGCMC 1 cut(s) 816
BaeI ACNNNNGTAYC 2 cut(s) 565, 598
BalI TGGCCA 1 cut(s) 970
BanI GGYRCC 1 cut(s) 640
BbvI GCAGC 1 cut(s) 777
BccI CCATC 6 cut(s) 228, 454, 733, 752, 973, 983
BciT130I CCWGG 1 cut(s) 342
BcoDI GTCTC 2 cut(s) 791, 856
BfaI CTAG 2 cut(s) 204, 509
BfmI CTRYAG 1 cut(s) 541
BisI GCNGC 1 cut(s) 766
BlsI GCNGC 1 cut(s) 767
BmcAI AGTACT 1 cut(s) 1103
Bme1390I CCNGG 1 cut(s) 342
BmeT110I CYCGRG 1 cut(s) 794
BmiI GGNNCC 4 cut(s) 443, 642, 723, 1173
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 5 cut(s) 62, 155, 292, 402, 921
BoxI GACNNNNGTC 1 cut(s) 803
BsaHI GRCGYC 1 cut(s) 822
BsaJI CCNNGG 2 cut(s) 417, 636
BsaWI WCCGGW 1 cut(s) 427
BsaXI ACNNNNNCTCC 4 cut(s) 628, 658, 836, 866
Bsc4I CCNNNNNNNGG 1 cut(s) 1039
Bse1I ACTGG 2 cut(s) 97, 1084
Bse3DI GCAATG 1 cut(s) 385
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 417, 636
BseGI GGATG 3 cut(s) 264, 744, 984
BseLI CCNNNNNNNGG 1 cut(s) 1039
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 1 cut(s) 861
BseNI ACTGG 2 cut(s) 97, 1084
BseSI GKGCMC 1 cut(s) 816
BseXI GCAGC 1 cut(s) 777
Bsh1285I CGRYCG 1 cut(s) 807
BshFI GGCC 1 cut(s) 970
BshNI GGYRCC 1 cut(s) 640
BsiEI CGRYCG 1 cut(s) 807
BsiHKCI CYCGRG 1 cut(s) 794
BsiSI CCGG 1 cut(s) 428
BslI CCNNNNNNNGG 1 cut(s) 1039
BsmAI GTCTC 2 cut(s) 791, 856
BsnI GGCC 1 cut(s) 970
BsoBI CYCGRG 1 cut(s) 794
Bsp1286I GDGCHC 1 cut(s) 816
Bsp143I GATC 6 cut(s) 12, 93, 711, 757, 1027, 1051
BspACI CCGC 1 cut(s) 157
BspANI GGCC 1 cut(s) 970
BspCNI CTCAG 1 cut(s) 860
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 4 cut(s) 443, 642, 723, 1173
BspPI GGATC 4 cut(s) 20, 88, 719, 1046
BspT107I GGYRCC 1 cut(s) 640
BsrDI GCAATG 1 cut(s) 385
BsrI ACTGG 2 cut(s) 97, 1084
BssECI CCNNGG 2 cut(s) 417, 636
BssMI GATC 6 cut(s) 12, 93, 711, 757, 1027, 1051
BssNI GRCGYC 1 cut(s) 822
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 5 cut(s) 371, 496, 640, 805, 893
Bst6I CTCTTC 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 822
BstC8I GCNNGC 2 cut(s) 682, 1195
BstDEI CTNAG 2 cut(s) 847, 1105
BstDSI CCRYGG 1 cut(s) 636
BstF5I GGATG 3 cut(s) 264, 744, 984
BstKTI GATC 6 cut(s) 15, 96, 714, 760, 1030, 1054
BstMAI GTCTC 2 cut(s) 791, 856
BstMBI GATC 6 cut(s) 12, 93, 711, 757, 1027, 1051
BstMCI CGRYCG 1 cut(s) 807
BstMWI GCNNNNNNNGC 1 cut(s) 1230
BstNI CCWGG 1 cut(s) 342
BstPAI GACNNNNGTC 1 cut(s) 803
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 1 cut(s) 541
BstSLI GKGCMC 1 cut(s) 816
BstV1I GCAGC 1 cut(s) 777
BstX2I RGATCY 2 cut(s) 12, 93
BstXI CCANNNNNNTGG 1 cut(s) 325
BstYI RGATCY 2 cut(s) 12, 93
BsuRI GGCC 1 cut(s) 970
BtgI CCRYGG 1 cut(s) 636
BtsCI GGATG 3 cut(s) 264, 744, 984
BtsIMutI CAGTG 2 cut(s) 270, 816
Cac8I GCNNGC 2 cut(s) 682, 1195
CciI TCATGA 1 cut(s) 346
Csp6I GTAC 2 cut(s) 889, 1102
CviAII CATG 3 cut(s) 277, 347, 966
CviQI GTAC 2 cut(s) 889, 1102
DdeI CTNAG 2 cut(s) 847, 1105
DpnI GATC 6 cut(s) 14, 95, 713, 759, 1029, 1053
DpnII GATC 6 cut(s) 12, 93, 711, 757, 1027, 1051
EaeI YGGCCR 1 cut(s) 968
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 794
EcoRII CCWGG 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 3 cut(s) 280, 350, 969
FatI CATG 3 cut(s) 276, 346, 965
FauNDI CATATG 1 cut(s) 1199
FblI GTMKAC 1 cut(s) 1209
Fnu4HI GCNGC 1 cut(s) 766
FokI GGATG 3 cut(s) 251, 731, 991
Fsp4HI GCNGC 1 cut(s) 766
FspBI CTAG 2 cut(s) 204, 509
GluI GCNGC 1 cut(s) 766
HaeIII GGCC 1 cut(s) 970
HapII CCGG 1 cut(s) 428
Hin1I GRCGYC 1 cut(s) 822
Hin1II CATG 3 cut(s) 280, 350, 969
HincII GTYRAC 2 cut(s) 121, 535
HindII GTYRAC 2 cut(s) 121, 535
HinfI GANTC 5 cut(s) 59, 424, 784, 1083, 1132
HpaII CCGG 1 cut(s) 428
HphI GGTGA 1 cut(s) 1022
Hpy166II GTNNAC 6 cut(s) 121, 172, 367, 535, 601, 1210
Hpy188I TCNGA 3 cut(s) 64, 164, 455
Hpy188III TCNNGA 5 cut(s) 347, 691, 794, 1025, 1217
Hpy8I GTNNAC 6 cut(s) 121, 172, 367, 535, 601, 1210
Hpy99I CGWCG 2 cut(s) 365, 827
HpyAV CCTTC 2 cut(s) 491, 750
HpyCH4III ACNGT 5 cut(s) 371, 496, 640, 805, 893
HpyCH4IV ACGT 1 cut(s) 822
HpyF10VI GCNNNNNNNGC 1 cut(s) 1230
HpyF3I CTNAG 2 cut(s) 847, 1105
HpySE526I ACGT 1 cut(s) 822
Hsp92I GRCGYC 1 cut(s) 822
Hsp92II CATG 3 cut(s) 280, 350, 969
Kzo9I GATC 6 cut(s) 12, 93, 711, 757, 1027, 1051
LmnI GCTCC 1 cut(s) 721
Lsp1109I GCAGC 1 cut(s) 777
LweI GCATC 5 cut(s) 62, 155, 292, 402, 921
MaeI CTAG 2 cut(s) 204, 509
MaeII ACGT 1 cut(s) 822
MaeIII GTNAC 3 cut(s) 291, 893, 1075
MalI GATC 6 cut(s) 14, 95, 713, 759, 1029, 1053
MboI GATC 6 cut(s) 12, 93, 711, 757, 1027, 1051
MboII GAAGA 2 cut(s) 79, 120
MfeI CAATTG 1 cut(s) 283
MflI RGATCY 2 cut(s) 12, 93
MhlI GDGCHC 1 cut(s) 816
MlsI TGGCCA 1 cut(s) 970
MluNI TGGCCA 1 cut(s) 970
MlyI GAGTC 2 cut(s) 433, 1141
MmeI TCCRAC 2 cut(s) 28, 602
MnlI CCTC 6 cut(s) 523, 546, 589, 618, 654, 763
Mox20I TGGCCA 1 cut(s) 970
MscI TGGCCA 1 cut(s) 970
MseI TTAA 4 cut(s) 102, 191, 225, 1241
MslI CAYNNNNRTG 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 970
MspI CCGG 1 cut(s) 428
MspR9I CCNGG 1 cut(s) 342
MunI CAATTG 1 cut(s) 283
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 1230
NdeI CATATG 1 cut(s) 1199
NdeII GATC 6 cut(s) 12, 93, 711, 757, 1027, 1051
NlaIII CATG 3 cut(s) 280, 350, 969
NlaIV GGNNCC 4 cut(s) 443, 642, 723, 1173
NmeAIII GCCGAG 1 cut(s) 741
NmuCI GTSAC 2 cut(s) 291, 893
PagI TCATGA 1 cut(s) 346
PfeI GAWTC 3 cut(s) 59, 784, 1083
PkrI GCNGC 1 cut(s) 767
PleI GAGTC 2 cut(s) 432, 1140
PpsI GAGTC 2 cut(s) 432, 1140
PshAI GACNNNNGTC 1 cut(s) 803
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 4 cut(s) 443, 642, 723, 1173
PsuI RGATCY 2 cut(s) 12, 93
RsaI GTAC 2 cut(s) 890, 1103
RsaNI GTAC 2 cut(s) 889, 1102
RseI CAYNNNNRTG 1 cut(s) 275
SaqAI TTAA 4 cut(s) 102, 191, 225, 1241
SatI GCNGC 1 cut(s) 766
Sau3AI GATC 6 cut(s) 12, 93, 711, 757, 1027, 1051
ScaI AGTACT 1 cut(s) 1103
SchI GAGTC 2 cut(s) 433, 1141
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 1 cut(s) 816
SetI ASST 7 cut(s) 83, 339, 419, 534, 600, 774, 825
SfaNI GCATC 5 cut(s) 62, 155, 292, 402, 921
SfcI CTRYAG 1 cut(s) 541
SmiMI CAYNNNNRTG 1 cut(s) 275
SsiI CCGC 1 cut(s) 157
SspI AATATT 1 cut(s) 607
SspMI CTAG 2 cut(s) 204, 509
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 5 cut(s) 371, 496, 640, 805, 893
TaiI ACGT 1 cut(s) 825
TaqI TCGA 2 cut(s) 807, 1065
TatI WGTACW 2 cut(s) 888, 1101
TfiI GAWTC 3 cut(s) 59, 784, 1083
Tru1I TTAA 4 cut(s) 102, 191, 225, 1241
Tru9I TTAA 4 cut(s) 102, 191, 225, 1241
TscAI CASTG 2 cut(s) 277, 823
TseFI GTSAC 2 cut(s) 291, 893
TseI GCWGC 1 cut(s) 765
Tsp45I GTSAC 2 cut(s) 291, 893
TspDTI ATGAA 5 cut(s) 199, 494, 512, 989, 1216
TspGWI ACGGA 2 cut(s) 120, 711
TspRI CASTG 2 cut(s) 277, 823
XapI RAATTY 3 cut(s) 244, 457, 1236
XmiI GTMKAC 1 cut(s) 1209
XspI CTAG 2 cut(s) 204, 509
ZraI GACGTC 1 cut(s) 823
ZrmI AGTACT 1 cut(s) 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.