Rmu_ssc0000167.1_g000005

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000167.1
OG0000234
Physical Location & Seq
Forward (+)
25603 .. 26742
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000167.1_g000005.1.cds

Sequence Viewer

Length: 1140 bp
atgttgagccgccaaaacaaaatgaaacgacgaagagatgctctagtgttcataggcatgccccaagaaatcttgtttgaaatccttgcaagattacctgtgaaatctctgttaaggttcagatgtgtttgcaaatattggaagactctgattagtaccccagatttcattaatgcccatctagagaggacttccatgaaaagtactcatgatcgtttgcttatccaaactagggagcgtaggatggatagaaagtgcttgtcactcttctgtgctgatacatttgccaagttttcggagatagagcttcctatgatcaaaattgaatcacatttccgcgctgtggtgggttcctacaatggagtggtttgcttatatgatagtgattttgaaacttatctatggaatccatcaatcagaaaattcaagagacttccccaggtcctcaatgatagaagggggcaactagctcactttgctatctcgttcgggttccatcctgaaggtgatgactataaagttgtgagaattttgacatttgaacgtcgttatatgattgaggttgaggtttacagccataggttggagtcttggagaagaattaacgcagttccccctaattcacatgaactgtatattcagggagaaggcacatgtgtgaatggagttgtgtactgggtcataaaagagtctttctcatcttgcaactccatcctttcttttgatctgggcaatgagatttttcaaacagtgaggcttcctgatagtctgctcagggcgattggtgatccacggcgttttccagttagtattcgagtgtttgagaaatccctttctttgtttcatgaaagacgagaggagaacggtaggtactgtgacatatggattctggaaatgggtagttggaaattgtttcacacgatgcttctcccagctcgtggatgtatagcctggccagtgggctttgcatcaaatggtcaagttcatattgtgatgtcaagtagaaagtttagcagcaaaacattggttttatatgatctcaaatcacaacgagtcaaggattttaaaatcaaactgcatgcgtatagaccaggcggatacattgattattttagggagagtttggtgttactcgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

379

Amino Acids

44.59

Weight (kDa)

9.53

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 583, 938
AccII CGCG 1 cut(s) 339
AciI CCGC 3 cut(s) 10, 337, 1095
AclWI GGATC 1 cut(s) 782
AcoI YGGCCR 1 cut(s) 953
AcsI RAATTY 2 cut(s) 422, 528
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 4 cut(s) 157, 205, 674, 872
AfiI CCNNNNNNNGG 4 cut(s) 232, 343, 583, 938
AflIII ACRYGT 1 cut(s) 653
AgsI TTSAA 6 cut(s) 80, 326, 392, 427, 542, 746
AjnI CCWGG 3 cut(s) 438, 950, 1090
AleI CACNNNNGTG 1 cut(s) 656
AluBI AGCT 3 cut(s) 307, 470, 935
AluI AGCT 3 cut(s) 307, 470, 935
Alw26I GTCTC 1 cut(s) 424
AlwI GGATC 1 cut(s) 782
AoxI GGCC 1 cut(s) 953
ApeKI GCWGC 1 cut(s) 1014
ApoI RAATTY 2 cut(s) 422, 528
AseI ATTAAT 1 cut(s) 171
AspLEI GCGC 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 442
AsuHPI GGTGA 2 cut(s) 518, 797
AvaII GGWCC 1 cut(s) 442
BalI TGGCCA 1 cut(s) 955
BauI CACGAG 1 cut(s) 936
BbsI GAAGAC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 1026
BccI CCATC 5 cut(s) 186, 238, 418, 504, 719
BceAI ACGGC 1 cut(s) 809
BciT130I CCWGG 3 cut(s) 440, 952, 1092
BciVI GTATCC 1 cut(s) 1091
BclI TGATCA 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 424
BfaI CTAG 4 cut(s) 44, 182, 231, 467
BfuI GTATCC 1 cut(s) 1091
BisI GCNGC 2 cut(s) 10, 1015
BlsI GCNGC 2 cut(s) 11, 1016
BmcAI AGTACT 1 cut(s) 205
Bme1390I CCNGG 3 cut(s) 440, 952, 1092
Bme18I GGWCC 1 cut(s) 442
BmgT120I GGNCC 1 cut(s) 442
BmiI GGNNCC 2 cut(s) 352, 494
BmrFI CCNGG 3 cut(s) 440, 952, 1092
BmrI ACTGGG 1 cut(s) 685
BmsI GCATC 3 cut(s) 28, 912, 977
BmuI ACTGGG 1 cut(s) 685
BpiI GAAGAC 1 cut(s) 149
BplI GAGNNNNNCTC 2 cut(s) 680, 712
Bpu10I CCTNAGC 1 cut(s) 773
BsaJI CCNNGG 2 cut(s) 438, 791
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 343, 583, 938
Bse1I ACTGG 3 cut(s) 680, 803, 956
Bse3DI GCAATG 1 cut(s) 739
BseBI CCWGG 3 cut(s) 440, 952, 1092
BseDI CCNNGG 2 cut(s) 438, 791
BseGI GGATG 4 cut(s) 249, 496, 711, 947
BseLI CCNNNNNNNGG 4 cut(s) 232, 343, 583, 938
BseMI GCAATG 1 cut(s) 739
BseMII CTCAG 1 cut(s) 787
BseNI ACTGG 3 cut(s) 680, 803, 956
BseRI GAGGAG 1 cut(s) 872
BseXI GCAGC 1 cut(s) 1026
BseYI CCCAGC 1 cut(s) 931
Bsh1236I CGCG 1 cut(s) 339
BshFI GGCC 1 cut(s) 955
BslI CCNNNNNNNGG 4 cut(s) 232, 343, 583, 938
BsmAI GTCTC 1 cut(s) 424
BsnI GGCC 1 cut(s) 955
Bsp143I GATC 5 cut(s) 211, 315, 724, 787, 1036
BspACI CCGC 3 cut(s) 10, 337, 1095
BspANI GGCC 1 cut(s) 955
BspCNI CTCAG 1 cut(s) 786
BspFNI CGCG 1 cut(s) 339
BspHI TCATGA 2 cut(s) 208, 844
BspLI GGNNCC 2 cut(s) 352, 494
BspPI GGATC 1 cut(s) 782
BsrDI GCAATG 1 cut(s) 739
BsrI ACTGG 3 cut(s) 680, 803, 956
BssECI CCNNGG 2 cut(s) 438, 791
BssMI GATC 5 cut(s) 211, 315, 724, 787, 1036
BssSI CACGAG 1 cut(s) 936
Bst2BI CACGAG 1 cut(s) 936
Bst2UI CCWGG 3 cut(s) 440, 952, 1092
Bst4CI ACNGT 4 cut(s) 633, 751, 866, 875
Bst6I CTCTTC 2 cut(s) 28, 272
BstC8I GCNNGC 2 cut(s) 59, 1080
BstDEI CTNAG 1 cut(s) 773
BstDSI CCRYGG 1 cut(s) 791
BstF5I GGATG 4 cut(s) 249, 496, 711, 947
BstFNI CGCG 1 cut(s) 339
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 5 cut(s) 214, 318, 727, 790, 1039
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 5 cut(s) 211, 315, 724, 787, 1036
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNI CCWGG 3 cut(s) 440, 952, 1092
BstNSI RCATGY 3 cut(s) 61, 657, 1082
BstSCI CCNGG 3 cut(s) 438, 950, 1090
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 1 cut(s) 1026
BstV2I GAAGAC 1 cut(s) 149
BsuI GTATCC 1 cut(s) 1091
BsuRI GGCC 1 cut(s) 955
BtgI CCRYGG 1 cut(s) 791
BtsCI GGATG 4 cut(s) 249, 496, 711, 947
BtsIMutI CAGTG 2 cut(s) 756, 963
Cac8I GCNNGC 2 cut(s) 59, 1080
CciI TCATGA 2 cut(s) 208, 844
CfoI GCGC 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 442
Csp6I GTAC 4 cut(s) 156, 204, 673, 871
CviAII CATG 7 cut(s) 58, 196, 209, 626, 654, 845, 1079
CviJI RGCY 9 cut(s) 9, 307, 470, 576, 757, 935, 950, 955, 963
CviKI_1 RGCY 9 cut(s) 9, 307, 470, 576, 757, 935, 950, 955, 963
CviQI GTAC 4 cut(s) 156, 204, 673, 871
DdeI CTNAG 1 cut(s) 773
DpnI GATC 5 cut(s) 213, 317, 726, 789, 1038
DpnII GATC 5 cut(s) 211, 315, 724, 787, 1036
DraI TTTAAA 1 cut(s) 1066
EaeI YGGCCR 1 cut(s) 953
Eam1104I CTCTTC 2 cut(s) 28, 272
EarI CTCTTC 2 cut(s) 28, 272
EciI GGCGGA 1 cut(s) 1110
Eco47I GGWCC 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 522
EcoO109I RGGNCCY 1 cut(s) 442
EcoRII CCWGG 3 cut(s) 438, 950, 1090
FaeI CATG 7 cut(s) 61, 199, 212, 629, 657, 848, 1082
FatI CATG 7 cut(s) 57, 195, 208, 625, 653, 844, 1078
FauNDI CATATG 1 cut(s) 881
FbaI TGATCA 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 10, 1015
FokI GGATG 4 cut(s) 256, 483, 698, 954
Fsp4HI GCNGC 2 cut(s) 10, 1015
FspBI CTAG 4 cut(s) 44, 182, 231, 467
GlaI GCGC 1 cut(s) 340
GluI GCNGC 2 cut(s) 10, 1015
GsaI CCCAGC 1 cut(s) 935
HaeIII GGCC 1 cut(s) 955
HhaI GCGC 1 cut(s) 341
Hin1II CATG 7 cut(s) 61, 199, 212, 629, 657, 848, 1082
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HinfI GANTC 7 cut(s) 145, 326, 406, 587, 689, 886, 1053
HphI GGTGA 2 cut(s) 518, 797
Hpy166II GTNNAC 2 cut(s) 571, 673
Hpy188I TCNGA 4 cut(s) 122, 150, 298, 419
Hpy188III TCNNGA 7 cut(s) 182, 209, 427, 500, 761, 845, 890
Hpy8I GTNNAC 2 cut(s) 571, 673
Hpy99I CGWCG 2 cut(s) 33, 549
HpyAV CCTTC 3 cut(s) 450, 497, 641
HpyCH4III ACNGT 4 cut(s) 633, 751, 866, 875
HpyCH4IV ACGT 1 cut(s) 544
HpyCH4V TGCA 5 cut(s) 89, 132, 705, 968, 1078
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 1 cut(s) 773
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 7 cut(s) 61, 199, 212, 629, 657, 848, 1082
HspAI GCGC 1 cut(s) 339
Ksp22I TGATCA 1 cut(s) 315
Kzo9I GATC 5 cut(s) 211, 315, 724, 787, 1036
LmnI GCTCC 1 cut(s) 235
Lsp1109I GCAGC 1 cut(s) 1026
LweI GCATC 3 cut(s) 28, 912, 977
MaeI CTAG 4 cut(s) 44, 182, 231, 467
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 3 cut(s) 261, 875, 1128
MalI GATC 5 cut(s) 213, 317, 726, 789, 1038
MboI GATC 5 cut(s) 211, 315, 724, 787, 1036
MboII GAAGA 4 cut(s) 45, 154, 259, 609
MlsI TGGCCA 1 cut(s) 955
MluCI AATT 6 cut(s) 321, 422, 528, 600, 619, 908
MluNI TGGCCA 1 cut(s) 955
MlyI GAGTC 4 cut(s) 139, 596, 698, 1062
MmeI TCCRAC 2 cut(s) 564, 884
MnlI CCTC 6 cut(s) 180, 455, 553, 559, 747, 850
Mox20I TGGCCA 1 cut(s) 955
MscI TGGCCA 1 cut(s) 955
MseI TTAA 4 cut(s) 113, 171, 603, 1065
MslI CAYNNNNRTG 2 cut(s) 56, 656
Msp20I TGGCCA 1 cut(s) 955
MspR9I CCNGG 3 cut(s) 440, 952, 1092
MvaI CCWGG 3 cut(s) 440, 952, 1092
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 476
NdeI CATATG 1 cut(s) 881
NdeII GATC 5 cut(s) 211, 315, 724, 787, 1036
NlaIII CATG 7 cut(s) 61, 199, 212, 629, 657, 848, 1082
NlaIV GGNNCC 2 cut(s) 352, 494
NmuCI GTSAC 2 cut(s) 261, 875
NspI RCATGY 3 cut(s) 61, 657, 1082
OliI CACNNNNGTG 1 cut(s) 656
PaeI GCATGC 2 cut(s) 61, 1082
PagI TCATGA 2 cut(s) 208, 844
PciI ACATGT 1 cut(s) 653
PfeI GAWTC 3 cut(s) 326, 406, 886
PflMI CCANNNNNTGG 2 cut(s) 583, 938
PkrI GCNGC 2 cut(s) 11, 1016
PleI GAGTC 4 cut(s) 139, 595, 697, 1061
PpsI GAGTC 4 cut(s) 139, 595, 697, 1061
PpuMI RGGWCCY 1 cut(s) 442
PscI ACATGT 1 cut(s) 653
PshBI ATTAAT 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 442
Psp6I CCWGG 3 cut(s) 438, 950, 1090
PspFI CCCAGC 1 cut(s) 931
PspGI CCWGG 3 cut(s) 438, 950, 1090
PspN4I GGNNCC 2 cut(s) 352, 494
PspPI GGNCC 1 cut(s) 442
PspPPI RGGWCCY 1 cut(s) 442
PsrI GAACNNNNNNTAC 2 cut(s) 854, 886
RsaI GTAC 4 cut(s) 157, 205, 674, 872
RsaNI GTAC 4 cut(s) 156, 204, 673, 871
RseI CAYNNNNRTG 2 cut(s) 56, 656
SaqAI TTAA 4 cut(s) 113, 171, 603, 1065
SatI GCNGC 2 cut(s) 10, 1015
Sau3AI GATC 5 cut(s) 211, 315, 724, 787, 1036
Sau96I GGNCC 1 cut(s) 442
ScaI AGTACT 1 cut(s) 205
SchI GAGTC 4 cut(s) 139, 596, 698, 1062
ScrFI CCNGG 3 cut(s) 440, 952, 1092
SfaNI GCATC 3 cut(s) 28, 912, 977
SinI GGWCC 1 cut(s) 442
SmiMI CAYNNNNRTG 2 cut(s) 56, 656
SphI GCATGC 2 cut(s) 61, 1082
Sse9I AATT 6 cut(s) 321, 422, 528, 600, 619, 908
SsiI CCGC 3 cut(s) 10, 337, 1095
SspI AATATT 1 cut(s) 137
SspMI CTAG 4 cut(s) 44, 182, 231, 467
StyD4I CCNGG 3 cut(s) 438, 950, 1090
TaaI ACNGT 4 cut(s) 633, 751, 866, 875
TaiI ACGT 1 cut(s) 547
TaqI TCGA 2 cut(s) 814, 1134
TasI AATT 6 cut(s) 321, 422, 528, 600, 619, 908
TatI WGTACW 2 cut(s) 203, 672
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 3 cut(s) 326, 406, 886
Tru1I TTAA 4 cut(s) 113, 171, 603, 1065
Tru9I TTAA 4 cut(s) 113, 171, 603, 1065
TscAI CASTG 2 cut(s) 756, 963
TseFI GTSAC 2 cut(s) 261, 875
TseI GCWGC 1 cut(s) 1014
Tsp45I GTSAC 2 cut(s) 261, 875
TspDTI ATGAA 8 cut(s) 38, 40, 157, 212, 642, 833, 861, 974
TspRI CASTG 2 cut(s) 756, 963
Van91I CCANNNNNTGG 2 cut(s) 583, 938
VpaK11BI GGWCC 1 cut(s) 442
VspI ATTAAT 1 cut(s) 171
XapI RAATTY 2 cut(s) 422, 528
XbaI TCTAGA 1 cut(s) 181
XceI RCATGY 3 cut(s) 61, 657, 1082
XspI CTAG 4 cut(s) 44, 182, 231, 467
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.