RLG00000028884

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000234
Physical Location & Seq
Forward (+)
29758984 .. 29762435
3452 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028884

Sequence Viewer

Length: 1092 bp
ATGCCCCAAGAAATCTTGTTTGAAATCCTTGCAAGATTACCTGTGAAATCTCTATTAAGGTTCAGATGTGTTTGCAAATATTGGAAGACTCTGATTAGTACCCCAGATTTCATTAATGCCCATCTAGAGAGGACTTCCATGAAAAGTACTCATGATCGTTTGCTTATCCAAACTAGGGAGCGTGGGATGGATAGGAAGTGCATGTCACTCTTCTGTGCCGATACATTTGCCAAGTTTTCGGAGATAGAGCTTCCTATGATCAAAATTGAATCACGTTTCCGCGTTGTGGTGGGTTCCTACAATGGAGTGGTTTGCTTATATGATAGTGATTTTGAAACTTATCTATGGAATCCATCAATCAGAAAATTCAAGAGACTTCCCCAGGTCCTCAATGATAGAAGGGGGCAATTAGCTCACTTTGCTATCTCGTTCGGGTTCCATCCTGAAGGTGATGACTATAAAGTTGTGAGAATTTTGACATTTGAACGTCGTTATATGATTGAGGTTGAGGTTTACAGCCATAGGTTGGAGTCTTGGAGAAGAATTAATGCAGTTCCCCCTAATTCTCATGAACTGTATATTCAGGGAGAAGGCACATGTGTGAATGGAGTTGTGTACTGGGTCATAAAAGAGTCTTTCTCATCTTGCAACTCCGTCCTTTCTTTTGATCTGGGCAATGAGATTTTTCAAACAGTGAGGCTTTCTGATAGTCTGCTCAGGGCGATTGGTGATCCACGGCGTTTTCCAGTGAATCTAGGTACCTTCTTTACTATCCCGCTTCACTCCTGCAATCTTGTTATTCCGTTTATGGTTGGACCTCAGCGGAATTTGGAACATTGTTGGCAATTGGTGTTGCGATGCTCGAAGATACACATTGAAGGTCTAGATTGCTTATGCTTTTATGCAATTAGGCTTAATGTGGTGGCTAGTACTCTTAACTGCGGTGGAGACGCGGACCATCTACTTGATTGGTATTGGCGTTGGTATAGGGAGGCTGATATCTCATTGCTTAGCGGCGATAGTGAGGCTACAGCTGCAGTTGTCTATGATGGAGGTGATCCTGGCGAATATGGTGATAGCGGCAGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

364

Amino Acids

41.87

Weight (kDa)

6.56

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 1 - 37 2.2e-11 F-box domain
F-box-like PF12937 2 - 35 3.8e-09 F-box-like
FBA_3 PF08268 92 - 236 7.7e-19 F-box associated beta propeller domain
FBA_1 PF07734 100 - 232 5.6e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 758
AccB1I GGYRCC 1 cut(s) 758
AccB7I CCANNNNNTGG 1 cut(s) 526
AccII CGCG 2 cut(s) 282, 953
AciI CCGC 7 cut(s) 280, 776, 823, 942, 953, 1014, 1080
AclWI GGATC 2 cut(s) 725, 1052
AcsI RAATTY 3 cut(s) 365, 471, 826
AcuI CTGAAG 1 cut(s) 465
AfaI GTAC 5 cut(s) 100, 148, 617, 760, 931
AfiI CCNNNNNNNGG 3 cut(s) 175, 286, 526
AflIII ACRYGT 1 cut(s) 596
AgsI TTSAA 7 cut(s) 23, 269, 335, 370, 485, 689, 878
AjnI CCWGG 2 cut(s) 381, 1060
AleI CACNNNNGTG 1 cut(s) 599
AluBI AGCT 3 cut(s) 250, 413, 1034
AluI AGCT 3 cut(s) 250, 413, 1034
Alw26I GTCTC 2 cut(s) 367, 942
AlwI GGATC 2 cut(s) 725, 1052
ApeKI GCWGC 2 cut(s) 1034, 1083
ApoI RAATTY 3 cut(s) 365, 471, 826
AseI ATTAAT 2 cut(s) 114, 546
Asp718I GGTACC 1 cut(s) 758
AspS9I GGNCC 3 cut(s) 385, 815, 955
AsuHPI GGTGA 4 cut(s) 461, 740, 1067, 1085
AvaII GGWCC 3 cut(s) 385, 815, 955
BanI GGYRCC 1 cut(s) 758
BbsI GAAGAC 1 cut(s) 92
BbvCI CCTCAGC 1 cut(s) 819
BbvI GCAGC 1 cut(s) 1021
BccI CCATC 6 cut(s) 129, 181, 361, 447, 966, 1043
BceAI ACGGC 1 cut(s) 752
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 2 cut(s) 383, 1062
BclI TGATCA 1 cut(s) 258
BcoDI GTCTC 2 cut(s) 367, 942
BfaI CTAG 5 cut(s) 125, 174, 755, 884, 927
BfmI CTRYAG 2 cut(s) 1029, 1035
BisI GCNGC 4 cut(s) 1015, 1035, 1081, 1084
BlpI GCTNAGC 1 cut(s) 1010
BlsI GCNGC 4 cut(s) 1016, 1036, 1082, 1085
BmcAI AGTACT 2 cut(s) 148, 931
Bme1390I CCNGG 2 cut(s) 383, 1062
Bme18I GGWCC 3 cut(s) 385, 815, 955
BmgT120I GGNCC 3 cut(s) 385, 815, 955
BmiI GGNNCC 3 cut(s) 295, 437, 760
BmrFI CCNGG 2 cut(s) 383, 1062
BmrI ACTGGG 1 cut(s) 628
BmsI GCATC 1 cut(s) 848
BmuI ACTGGG 1 cut(s) 628
BpiI GAAGAC 1 cut(s) 92
BplI GAGNNNNNCTC 2 cut(s) 623, 655
Bpu10I CCTNAGC 2 cut(s) 716, 819
Bpu1102I GCTNAGC 1 cut(s) 1010
BsaJI CCNNGG 2 cut(s) 381, 734
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 286, 526
Bse1I ACTGG 2 cut(s) 623, 746
Bse3DI GCAATG 2 cut(s) 682, 1004
BseBI CCWGG 2 cut(s) 383, 1062
BseDI CCNNGG 2 cut(s) 381, 734
BseGI GGATG 2 cut(s) 192, 439
BseLI CCNNNNNNNGG 3 cut(s) 175, 286, 526
BseMI GCAATG 2 cut(s) 682, 1004
BseMII CTCAG 2 cut(s) 730, 833
BseNI ACTGG 2 cut(s) 623, 746
BseXI GCAGC 1 cut(s) 1021
Bsh1236I CGCG 2 cut(s) 282, 953
BshNI GGYRCC 1 cut(s) 758
BslI CCNNNNNNNGG 3 cut(s) 175, 286, 526
BsmAI GTCTC 2 cut(s) 367, 942
BsmBI CGTCTC 1 cut(s) 942
Bsp143I GATC 5 cut(s) 154, 258, 667, 730, 1057
Bsp1720I GCTNAGC 1 cut(s) 1010
BspACI CCGC 7 cut(s) 280, 776, 823, 942, 953, 1014, 1080
BspCNI CTCAG 2 cut(s) 729, 832
BspFNI CGCG 2 cut(s) 282, 953
BspHI TCATGA 2 cut(s) 151, 568
BspLI GGNNCC 3 cut(s) 295, 437, 760
BspMAI CTGCAG 1 cut(s) 1039
BspPI GGATC 2 cut(s) 725, 1052
BspT107I GGYRCC 1 cut(s) 758
BsrDI GCAATG 2 cut(s) 682, 1004
BsrI ACTGG 2 cut(s) 623, 746
BssECI CCNNGG 2 cut(s) 381, 734
BssMI GATC 5 cut(s) 154, 258, 667, 730, 1057
Bst2UI CCWGG 2 cut(s) 383, 1062
Bst4CI ACNGT 2 cut(s) 576, 694
Bst6I CTCTTC 1 cut(s) 215
BstDEI CTNAG 3 cut(s) 716, 819, 1010
BstDSI CCRYGG 1 cut(s) 734
BstF5I GGATG 2 cut(s) 192, 439
BstFNI CGCG 2 cut(s) 282, 953
BstKTI GATC 5 cut(s) 157, 261, 670, 733, 1060
BstMAI GTCTC 2 cut(s) 367, 942
BstMBI GATC 5 cut(s) 154, 258, 667, 730, 1057
BstMWI GCNNNNNNNGC 2 cut(s) 419, 1034
BstNI CCWGG 2 cut(s) 383, 1062
BstNSI RCATGY 2 cut(s) 205, 600
BstSCI CCNGG 2 cut(s) 381, 1060
BstSFI CTRYAG 2 cut(s) 1029, 1035
BstUI CGCG 2 cut(s) 282, 953
BstV1I GCAGC 1 cut(s) 1021
BstV2I GAAGAC 1 cut(s) 92
BtgI CCRYGG 1 cut(s) 734
BtgZI GCGATG 1 cut(s) 871
BtsCI GGATG 2 cut(s) 192, 439
BtsIMutI CAGTG 2 cut(s) 699, 753
CciI TCATGA 2 cut(s) 151, 568
Cfr13I GGNCC 3 cut(s) 385, 815, 955
CseI GACGC 1 cut(s) 959
Csp6I GTAC 5 cut(s) 99, 147, 616, 759, 930
CviAII CATG 5 cut(s) 139, 152, 202, 569, 597
CviJI RGCY 9 cut(s) 250, 413, 519, 700, 913, 926, 995, 1028, 1034
CviKI_1 RGCY 9 cut(s) 250, 413, 519, 700, 913, 926, 995, 1028, 1034
CviQI GTAC 5 cut(s) 99, 147, 616, 759, 930
DdeI CTNAG 3 cut(s) 716, 819, 1010
DpnI GATC 5 cut(s) 156, 260, 669, 732, 1059
DpnII GATC 5 cut(s) 154, 258, 667, 730, 1057
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco32I GATATC 1 cut(s) 1000
Eco47I GGWCC 3 cut(s) 385, 815, 955
Eco57I CTGAAG 1 cut(s) 465
EcoO109I RGGNCCY 1 cut(s) 385
EcoRII CCWGG 2 cut(s) 381, 1060
EcoRV GATATC 1 cut(s) 1000
Esp3I CGTCTC 1 cut(s) 942
FaeI CATG 5 cut(s) 142, 155, 205, 572, 600
FatI CATG 5 cut(s) 138, 151, 201, 568, 596
FauI CCCGC 1 cut(s) 783
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 4 cut(s) 1015, 1035, 1081, 1084
FokI GGATG 2 cut(s) 199, 426
Fsp4HI GCNGC 4 cut(s) 1015, 1035, 1081, 1084
FspBI CTAG 5 cut(s) 125, 174, 755, 884, 927
GluI GCNGC 4 cut(s) 1015, 1035, 1081, 1084
HgaI GACGC 1 cut(s) 959
Hin1II CATG 5 cut(s) 142, 155, 205, 572, 600
HinfI GANTC 6 cut(s) 88, 269, 349, 530, 632, 751
HphI GGTGA 4 cut(s) 461, 740, 1067, 1085
Hpy166II GTNNAC 2 cut(s) 514, 616
Hpy188I TCNGA 5 cut(s) 65, 93, 241, 362, 706
Hpy188III TCNNGA 6 cut(s) 125, 152, 370, 443, 569, 884
Hpy8I GTNNAC 2 cut(s) 514, 616
Hpy99I CGWCG 1 cut(s) 492
HpyAV CCTTC 5 cut(s) 393, 440, 584, 772, 872
HpyCH4III ACNGT 2 cut(s) 576, 694
HpyCH4IV ACGT 2 cut(s) 274, 487
HpyCH4V TGCA 8 cut(s) 32, 75, 201, 551, 648, 789, 905, 1037
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 1034
HpyF3I CTNAG 3 cut(s) 716, 819, 1010
HpySE526I ACGT 2 cut(s) 274, 487
Hsp92II CATG 5 cut(s) 142, 155, 205, 572, 600
KpnI GGTACC 1 cut(s) 762
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 5 cut(s) 154, 258, 667, 730, 1057
LmnI GCTCC 1 cut(s) 178
Lsp1109I GCAGC 1 cut(s) 1021
LweI GCATC 1 cut(s) 848
MaeI CTAG 5 cut(s) 125, 174, 755, 884, 927
MaeII ACGT 2 cut(s) 274, 487
MaeIII GTNAC 1 cut(s) 204
MalI GATC 5 cut(s) 156, 260, 669, 732, 1059
MboI GATC 5 cut(s) 154, 258, 667, 730, 1057
MboII GAAGA 4 cut(s) 97, 202, 552, 877
MfeI CAATTG 1 cut(s) 845
MlyI GAGTC 3 cut(s) 82, 539, 641
MmeI TCCRAC 2 cut(s) 507, 793
MnlI CCTC 9 cut(s) 123, 398, 496, 502, 690, 828, 985, 1018, 1046
MseI TTAA 5 cut(s) 56, 114, 546, 915, 936
MslI CAYNNNNRTG 1 cut(s) 599
MspA1I CMGCKG 2 cut(s) 823, 1034
MspR9I CCNGG 2 cut(s) 383, 1062
MunI CAATTG 1 cut(s) 845
MvaI CCWGG 2 cut(s) 383, 1062
MvnI CGCG 2 cut(s) 282, 953
MwoI GCNNNNNNNGC 2 cut(s) 419, 1034
NdeII GATC 5 cut(s) 154, 258, 667, 730, 1057
NlaIII CATG 5 cut(s) 142, 155, 205, 572, 600
NlaIV GGNNCC 3 cut(s) 295, 437, 760
NmuCI GTSAC 1 cut(s) 204
NspI RCATGY 2 cut(s) 205, 600
OliI CACNNNNGTG 1 cut(s) 599
PagI TCATGA 2 cut(s) 151, 568
PciI ACATGT 1 cut(s) 596
PfeI GAWTC 3 cut(s) 269, 349, 751
PflMI CCANNNNNTGG 1 cut(s) 526
PkrI GCNGC 4 cut(s) 1016, 1036, 1082, 1085
PleI GAGTC 3 cut(s) 82, 538, 640
PpsI GAGTC 3 cut(s) 82, 538, 640
PpuMI RGGWCCY 1 cut(s) 385
PscI ACATGT 1 cut(s) 596
PshBI ATTAAT 2 cut(s) 114, 546
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 2 cut(s) 381, 1060
PspGI CCWGG 2 cut(s) 381, 1060
PspN4I GGNNCC 3 cut(s) 295, 437, 760
PspPI GGNCC 3 cut(s) 385, 815, 955
PspPPI RGGWCCY 1 cut(s) 385
PstI CTGCAG 1 cut(s) 1039
PvuII CAGCTG 1 cut(s) 1034
RsaI GTAC 5 cut(s) 100, 148, 617, 760, 931
RsaNI GTAC 5 cut(s) 99, 147, 616, 759, 930
RseI CAYNNNNRTG 1 cut(s) 599
SaqAI TTAA 5 cut(s) 56, 114, 546, 915, 936
SatI GCNGC 4 cut(s) 1015, 1035, 1081, 1084
Sau3AI GATC 5 cut(s) 154, 258, 667, 730, 1057
Sau96I GGNCC 3 cut(s) 385, 815, 955
ScaI AGTACT 2 cut(s) 148, 931
SchI GAGTC 3 cut(s) 82, 539, 641
ScrFI CCNGG 2 cut(s) 383, 1062
SfaNI GCATC 1 cut(s) 848
SfcI CTRYAG 2 cut(s) 1029, 1035
SinI GGWCC 3 cut(s) 385, 815, 955
SmiMI CAYNNNNRTG 1 cut(s) 599
SsiI CCGC 7 cut(s) 280, 776, 823, 942, 953, 1014, 1080
SspI AATATT 1 cut(s) 80
SspMI CTAG 5 cut(s) 125, 174, 755, 884, 927
StyD4I CCNGG 2 cut(s) 381, 1060
TaaI ACNGT 2 cut(s) 576, 694
TaiI ACGT 2 cut(s) 277, 490
TaqI TCGA 1 cut(s) 863
TatI WGTACW 3 cut(s) 146, 615, 929
TauI GCSGC 2 cut(s) 1017, 1083
TfiI GAWTC 3 cut(s) 269, 349, 751
Tru1I TTAA 5 cut(s) 56, 114, 546, 915, 936
Tru9I TTAA 5 cut(s) 56, 114, 546, 915, 936
TscAI CASTG 2 cut(s) 699, 753
TseFI GTSAC 1 cut(s) 204
TseI GCWGC 2 cut(s) 1034, 1083
Tsp45I GTSAC 1 cut(s) 204
TspDTI ATGAA 3 cut(s) 100, 155, 585
TspGWI ACGGA 2 cut(s) 643, 792
TspRI CASTG 2 cut(s) 699, 753
Van91I CCANNNNNTGG 1 cut(s) 526
VpaK11BI GGWCC 3 cut(s) 385, 815, 955
VspI ATTAAT 2 cut(s) 114, 546
XapI RAATTY 3 cut(s) 365, 471, 826
XbaI TCTAGA 2 cut(s) 124, 883
XceI RCATGY 2 cut(s) 205, 600
XspI CTAG 5 cut(s) 125, 174, 755, 884, 927
ZrmI AGTACT 2 cut(s) 148, 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.