Rmu_sc0001942.1_g000032

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001942.1
OG0000234
Physical Location & Seq
Forward (+)
122750 .. 123916
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001942.1_g000032.1.cds

Sequence Viewer

Length: 1167 bp
atgtttcctacccctacaaaaaaagttacagctgcaagagtgacgtcgtttgaagacctaccccaagaaataaagtttgaaatctttgaaaaactacctgctgtgaaatatgtactgcggtcaacatgcgtttgcaaatcttggaatacgttgatttgcagcccaagtttcataaacgctcatcataagaaaaacgtcttgatgaaaggtaatacgaattacgagtatttactcaccggcagtgctaaacagaagtgcttctcactcttttctgctgaaacatatgccaagtgcttggaattagagcttctgattccggaagacaaattagggtcatacctcaagattgagggttcgtgcaatggactgctttgcgtctctactcgtaactttccttcgagttgtaaaattcccatatatttatggaatccatccatcagaaaatttcgacaacttcctgaacccttaatcactgctcgcagctgtacttatattggattagggttccaacctggggaagatgactacaaagttgtgaagattattgtgatgagcgcagaaagtaccggtttttactgccaagttgaggtttacagcgtcagattgaactcgtggagaagaattaatactgcagttccgttgtcacgtgtctcatttcagttgcaggaaaaaagcatatacttcaatggagttgtctattgggttgcagcagagcatccgacctcgttttttactgcaggccataaagtaaaggttagtcctatccgtcgttgcatccttgcttttgatatgagcagtgaaatttttcgaaaaattgtacttcctaatgaattggtgaatccgtatccaaatctggatccgattcatattcgggtgcttgagaatgcactttctgtgttccacttggattgggaatctttctccgctgacatatgggttctggaaaaagataatacttggaaaaatgttcgcactattcggcagccatcaaaggattacatagcttggcctctgggctttaataaaaatggtgaagttcatattacaagaagaaactcttgtttggtcttgtacgatactaaatcgcgtcctgtcaaggagattgagatacctcatatagccaggtacatcgacgcctatagagagagtttaattttactccattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

388

Amino Acids

44.68

Weight (kDa)

9.06

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 47
Acc36I ACCTGC 1 cut(s) 106
AccII CGCG 1 cut(s) 1087
AccIII TCCGGA 1 cut(s) 316
AciI CCGC 2 cut(s) 118, 924
AclWI GGATC 2 cut(s) 851, 864
AcsI RAATTY 3 cut(s) 408, 443, 801
AcvI CACGTG 1 cut(s) 647
AcyI GRCGYC 2 cut(s) 44, 1134
AfaI GTAC 6 cut(s) 114, 487, 565, 819, 1073, 1127
AfiI CCNNNNNNNGG 2 cut(s) 514, 586
AflIII ACRYGT 1 cut(s) 646
AgeI ACCGGT 1 cut(s) 566
AgsI TTSAA 5 cut(s) 53, 80, 89, 607, 685
AjnI CCWGG 2 cut(s) 511, 1121
AluBI AGCT 4 cut(s) 32, 307, 483, 1004
AluI AGCT 4 cut(s) 32, 307, 483, 1004
Alw26I GTCTC 2 cut(s) 382, 655
AlwI GGATC 2 cut(s) 851, 864
Aor13HI TCCGGA 1 cut(s) 316
AoxI GGCC 2 cut(s) 739, 1007
ApeKI GCWGC 5 cut(s) 32, 159, 480, 707, 982
ApoI RAATTY 3 cut(s) 408, 443, 801
AseI ATTAAT 1 cut(s) 624
AsiGI ACCGGT 1 cut(s) 566
Asp700I GAANNNNTTC 2 cut(s) 257, 804
AspLEI GCGC 1 cut(s) 557
AsuHPI GGTGA 3 cut(s) 226, 847, 1043
AsuII TTCGAA 1 cut(s) 808
BamHI GGATCC 1 cut(s) 856
BarI GAAGNNNNNNTAC 4 cut(s) 379, 411, 610, 642
BauI CACGAG 1 cut(s) 610
BbrPI CACGTG 1 cut(s) 647
BbsI GAAGAC 2 cut(s) 60, 327
BbvI GCAGC 5 cut(s) 19, 171, 492, 719, 994
BccI CCATC 3 cut(s) 439, 443, 994
BciT130I CCWGG 2 cut(s) 513, 1123
BciVI GTATCC 1 cut(s) 855
BcoDI GTCTC 2 cut(s) 382, 655
BfmI CTRYAG 3 cut(s) 630, 735, 1138
BfuAI ACCTGC 1 cut(s) 106
BfuI GTATCC 1 cut(s) 855
BisI GCNGC 5 cut(s) 33, 160, 481, 708, 983
BlsI GCNGC 5 cut(s) 34, 161, 482, 709, 984
Bme1390I CCNGG 2 cut(s) 513, 1123
BmiI GGNNCC 2 cut(s) 506, 858
BmrFI CCNGG 2 cut(s) 513, 1123
BmsI GCATC 2 cut(s) 724, 783
BpiI GAAGAC 2 cut(s) 60, 327
Bpu14I TTCGAA 1 cut(s) 808
BpuEI CTTGAG 2 cut(s) 326, 899
BsaAI YACGTR 1 cut(s) 647
BsaHI GRCGYC 2 cut(s) 44, 1134
BsaJI CCNNGG 1 cut(s) 512
BsaWI WCCGGW 2 cut(s) 316, 566
Bsc4I CCNNNNNNNGG 2 cut(s) 514, 586
Bse118I RCCGGY 2 cut(s) 236, 566
Bse3DI GCAATG 1 cut(s) 367
BseAI TCCGGA 1 cut(s) 316
BseBI CCWGG 2 cut(s) 513, 1123
BseDI CCNNGG 1 cut(s) 512
BseGI GGATG 3 cut(s) 431, 715, 774
BseLI CCNNNNNNNGG 2 cut(s) 514, 586
BseMI GCAATG 1 cut(s) 367
BseXI GCAGC 5 cut(s) 19, 171, 492, 719, 994
Bsh1236I CGCG 1 cut(s) 1087
BshFI GGCC 2 cut(s) 741, 1009
BshTI ACCGGT 1 cut(s) 566
BsiSI CCGG 3 cut(s) 237, 317, 567
BslI CCNNNNNNNGG 2 cut(s) 514, 586
BsmAI GTCTC 2 cut(s) 382, 655
BsmBI CGTCTC 1 cut(s) 382
BsmI GAATGC 1 cut(s) 889
BsnI GGCC 2 cut(s) 741, 1009
Bsp119I TTCGAA 1 cut(s) 808
Bsp13I TCCGGA 1 cut(s) 316
Bsp143I GATC 1 cut(s) 856
BspACI CCGC 2 cut(s) 118, 924
BspANI GGCC 2 cut(s) 741, 1009
BspEI TCCGGA 1 cut(s) 316
BspFNI CGCG 1 cut(s) 1087
BspLI GGNNCC 2 cut(s) 506, 858
BspMAI CTGCAG 2 cut(s) 634, 739
BspMI ACCTGC 1 cut(s) 106
BspPI GGATC 2 cut(s) 851, 864
BspT104I TTCGAA 1 cut(s) 808
BsrDI GCAATG 1 cut(s) 367
BsrFI RCCGGY 2 cut(s) 236, 566
BssAI RCCGGY 2 cut(s) 236, 566
BssECI CCNNGG 1 cut(s) 512
BssMI GATC 1 cut(s) 856
BssNI GRCGYC 2 cut(s) 44, 1134
BssSI CACGAG 1 cut(s) 610
Bst2BI CACGAG 1 cut(s) 610
Bst2UI CCWGG 2 cut(s) 513, 1123
BstACI GRCGYC 2 cut(s) 44, 1134
BstBAI YACGTR 1 cut(s) 647
BstBI TTCGAA 1 cut(s) 808
BstC8I GCNNGC 2 cut(s) 478, 739
BstF5I GGATG 3 cut(s) 431, 715, 774
BstFNI CGCG 1 cut(s) 1087
BstHHI GCGC 1 cut(s) 557
BstKTI GATC 1 cut(s) 859
BstMAI GTCTC 2 cut(s) 382, 655
BstMBI GATC 1 cut(s) 856
BstNI CCWGG 2 cut(s) 513, 1123
BstNSI RCATGY 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 511, 1121
BstSFI CTRYAG 3 cut(s) 630, 735, 1138
BstUI CGCG 1 cut(s) 1087
BstV1I GCAGC 5 cut(s) 19, 171, 492, 719, 994
BstV2I GAAGAC 2 cut(s) 60, 327
BstX2I RGATCY 1 cut(s) 856
BstXI CCANNNNNNTGG 1 cut(s) 295
BstYI RGATCY 1 cut(s) 856
BsuI GTATCC 1 cut(s) 855
BsuRI GGCC 2 cut(s) 741, 1009
BtsCI GGATG 3 cut(s) 431, 715, 774
BtsI GCAGTG 3 cut(s) 247, 471, 802
BtsIMutI CAGTG 3 cut(s) 247, 471, 802
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 478, 739
CfoI GCGC 1 cut(s) 557
Cfr10I RCCGGY 2 cut(s) 236, 566
CseI GACGC 4 cut(s) 364, 586, 1076, 1142
Csp6I GTAC 6 cut(s) 113, 486, 564, 818, 1072, 1126
CspAI ACCGGT 1 cut(s) 566
CspCI CAANNNNNGTGG 2 cut(s) 890, 925
CviAII CATG 1 cut(s) 126
CviQI GTAC 6 cut(s) 113, 486, 564, 818, 1072, 1126
DpnI GATC 1 cut(s) 858
DpnII GATC 1 cut(s) 856
Eco72I CACGTG 1 cut(s) 647
EcoRII CCWGG 2 cut(s) 511, 1121
Esp3I CGTCTC 1 cut(s) 382
FaeI CATG 1 cut(s) 129
FalI AAGNNNNNCTT 2 cut(s) 1042, 1074
FatI CATG 1 cut(s) 125
FauNDI CATATG 2 cut(s) 283, 932
Fnu4HI GCNGC 5 cut(s) 33, 160, 481, 708, 983
FokI GGATG 3 cut(s) 418, 702, 761
Fsp4HI GCNGC 5 cut(s) 33, 160, 481, 708, 983
GlaI GCGC 1 cut(s) 556
GluI GCNGC 5 cut(s) 33, 160, 481, 708, 983
HaeIII GGCC 2 cut(s) 741, 1009
HapII CCGG 3 cut(s) 237, 317, 567
HgaI GACGC 4 cut(s) 364, 586, 1076, 1142
HhaI GCGC 1 cut(s) 557
Hin1I GRCGYC 2 cut(s) 44, 1134
Hin1II CATG 1 cut(s) 129
Hin6I GCGC 1 cut(s) 555
HinP1I GCGC 1 cut(s) 555
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HinfI GANTC 5 cut(s) 313, 427, 838, 862, 914
HpaII CCGG 3 cut(s) 237, 317, 567
HphI GGTGA 3 cut(s) 226, 847, 1043
Hpy166II GTNNAC 2 cut(s) 123, 592
Hpy188I TCNGA 5 cut(s) 312, 440, 602, 720, 861
Hpy188III TCNNGA 6 cut(s) 199, 317, 343, 458, 854, 941
Hpy8I GTNNAC 2 cut(s) 123, 592
Hpy99I CGWCG 3 cut(s) 49, 771, 1136
HpyAV CCTTC 1 cut(s) 405
HpyCH4IV ACGT 4 cut(s) 44, 149, 195, 646
HpySE526I ACGT 4 cut(s) 44, 149, 195, 646
Hsp92I GRCGYC 2 cut(s) 44, 1134
Hsp92II CATG 1 cut(s) 129
HspAI GCGC 1 cut(s) 555
Kpn2I TCCGGA 1 cut(s) 316
Kzo9I GATC 1 cut(s) 856
Lsp1109I GCAGC 5 cut(s) 19, 171, 492, 719, 994
LweI GCATC 2 cut(s) 724, 783
MaeII ACGT 4 cut(s) 44, 149, 195, 646
MaeIII GTNAC 4 cut(s) 25, 40, 386, 642
MalI GATC 1 cut(s) 858
MboI GATC 1 cut(s) 856
MboII GAAGA 6 cut(s) 65, 332, 530, 550, 630, 1062
MflI RGATCY 1 cut(s) 856
MmeI TCCRAC 2 cut(s) 532, 743
MnlI CCTC 6 cut(s) 343, 350, 580, 733, 1020, 1122
MroI TCCGGA 1 cut(s) 316
MroXI GAANNNNTTC 2 cut(s) 257, 804
MseI TTAA 4 cut(s) 467, 624, 1020, 1151
MspA1I CMGCKG 3 cut(s) 32, 483, 926
MspI CCGG 3 cut(s) 237, 317, 567
MspR9I CCNGG 2 cut(s) 513, 1123
Mva1269I GAATGC 1 cut(s) 889
MvaI CCWGG 2 cut(s) 513, 1123
MvnI CGCG 1 cut(s) 1087
NdeI CATATG 2 cut(s) 283, 932
NdeII GATC 1 cut(s) 856
NlaIII CATG 1 cut(s) 129
NlaIV GGNNCC 2 cut(s) 506, 858
NmuCI GTSAC 2 cut(s) 40, 642
NspI RCATGY 1 cut(s) 129
NspV TTCGAA 1 cut(s) 808
PctI GAATGC 1 cut(s) 889
PdmI GAANNNNTTC 2 cut(s) 257, 804
PfeI GAWTC 5 cut(s) 313, 427, 838, 862, 914
PinAI ACCGGT 1 cut(s) 566
PkrI GCNGC 5 cut(s) 34, 161, 482, 709, 984
PmaCI CACGTG 1 cut(s) 647
PmlI CACGTG 1 cut(s) 647
Ppu21I YACGTR 1 cut(s) 647
PshBI ATTAAT 1 cut(s) 624
Psp6I CCWGG 2 cut(s) 511, 1121
PspCI CACGTG 1 cut(s) 647
PspGI CCWGG 2 cut(s) 511, 1121
PspN4I GGNNCC 2 cut(s) 506, 858
PstI CTGCAG 2 cut(s) 634, 739
PsuI RGATCY 1 cut(s) 856
PvuII CAGCTG 2 cut(s) 32, 483
RsaI GTAC 6 cut(s) 114, 487, 565, 819, 1073, 1127
RsaNI GTAC 6 cut(s) 113, 486, 564, 818, 1072, 1126
SaqAI TTAA 4 cut(s) 467, 624, 1020, 1151
SatI GCNGC 5 cut(s) 33, 160, 481, 708, 983
Sau3AI GATC 1 cut(s) 856
ScrFI CCNGG 2 cut(s) 513, 1123
SfaNI GCATC 2 cut(s) 724, 783
SfcI CTRYAG 3 cut(s) 630, 735, 1138
SfuI TTCGAA 1 cut(s) 808
SmlI CTYRAG 2 cut(s) 341, 878
SmoI CTYRAG 2 cut(s) 341, 878
SsiI CCGC 2 cut(s) 118, 924
StyD4I CCNGG 2 cut(s) 511, 1121
TaiI ACGT 4 cut(s) 47, 152, 198, 649
TaqI TCGA 4 cut(s) 398, 448, 808, 1131
TatI WGTACW 3 cut(s) 112, 485, 817
TfiI GAWTC 5 cut(s) 313, 427, 838, 862, 914
Tru1I TTAA 4 cut(s) 467, 624, 1020, 1151
Tru9I TTAA 4 cut(s) 467, 624, 1020, 1151
TscAI CASTG 3 cut(s) 247, 478, 802
TseFI GTSAC 2 cut(s) 40, 642
TseI GCWGC 5 cut(s) 32, 159, 480, 707, 982
Tsp45I GTSAC 2 cut(s) 40, 642
TspDTI ATGAA 5 cut(s) 160, 218, 843, 854, 1028
TspGWI ACGGA 3 cut(s) 627, 755, 831
TspRI CASTG 3 cut(s) 247, 478, 802
VspI ATTAAT 1 cut(s) 624
XapI RAATTY 3 cut(s) 408, 443, 801
XceI RCATGY 1 cut(s) 129
XmnI GAANNNNTTC 2 cut(s) 257, 804
ZraI GACGTC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.