Rw2G014090

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000234
Physical Location & Seq
Reverse (-)
15551396 .. 15557035
5640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G014090.1

Sequence Viewer

Length: 783 bp
ATGAAAAAAAGTAGTGCGAATTATGAGTATCTACTTATCGGCACTGACCAGAGAGTGTGCTTGTCCCTCTTTTGTGCTGAGACATACACCAAGTGCTTGGATTTAGAGTTTCCTGAGCACGAACTCGGTCCAACCTTCTATGTCCATGGTTCATGTAATAGAGTGCTTTGCATCTCTAATAAACCACTAACTGTTACTTTAAGTAGTCCTCCCATATATCTATGGAATCCATCCATTAGAAGATTCAAGGAACTACCTAAAGGCCTCCTCCGTGAGTATGACTATGGAGGATTCCCGGAATATAAGGGGAAATTGTTTTATGATGAAGTTGAGGTTTATAGCCTTAGATTGAATTCGTGGAGAAGAACTAAATGCGGGGTACATCGATCTGTACACTTGAATGGAGTTGTATTTTGGAAAGTATTTGATTATTCTACGTATAATCATTCCATCCTTTCTTTTGACATGAAAAGCGAGGTTTTCAGTAGGATTTTAGGGCAAGTTTACTTACTTGGAAGGAAAGGGAATGATTACGGGACTTGGAAAATGATTCACACCATTCGTCTGCCTGCTAGAAAGATAAAAGGAGAAATACCACAGCCTTTGTGCTTTGCTAAAAATGGTGGAGTTCATGTAGCTACATCAGCAAAGGGAGGGGAGAGTGGTTATTATTTGGGTGTATATGATCCTAAATCTCCTCATGCTATGGATACTAAAATAGGTATCGATTATCAAAGCATGTACATTGATTCCTATAAAGAGAGTCTCCTTTTACTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

29.87

Weight (kDa)

8.9

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 30 - 165 2.2e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 375
AclWI GGATC 1 cut(s) 680
AcsI RAATTY 1 cut(s) 352
AdeI CACNNNGTG 1 cut(s) 93
AfaI GTAC 3 cut(s) 381, 393, 743
AgsI TTSAA 3 cut(s) 247, 352, 400
AluBI AGCT 1 cut(s) 638
AluI AGCT 1 cut(s) 638
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 2 cut(s) 74, 770
AlwI GGATC 1 cut(s) 680
AoxI GGCC 1 cut(s) 262
ApoI RAATTY 1 cut(s) 352
AspS9I GGNCC 1 cut(s) 128
AsuC2I CCSGG 1 cut(s) 296
AvaII GGWCC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 120
BccI CCATC 2 cut(s) 238, 458
BciVI GTATCC 1 cut(s) 703
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 74, 770
BfaI CTAG 1 cut(s) 573
BfuI GTATCC 1 cut(s) 703
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 296
Bsa29I ATCGAT 2 cut(s) 385, 726
BsaAI YACGTR 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 145
BsaXI ACNNNNNCTCC 2 cut(s) 618, 648
BseCI ATCGAT 2 cut(s) 385, 726
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 2 cut(s) 230, 450
BseMII CTCAG 2 cut(s) 69, 105
BseRI GAGGAG 2 cut(s) 257, 687
BshFI GGCC 1 cut(s) 264
BshVI ATCGAT 2 cut(s) 385, 726
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 2 cut(s) 49, 550
BsmAI GTCTC 2 cut(s) 74, 770
BsmFI GGGAC 2 cut(s) 49, 550
BsnI GGCC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 120
Bsp1407I TGTACA 2 cut(s) 391, 741
Bsp143I GATC 2 cut(s) 386, 685
Bsp19I CCATGG 1 cut(s) 145
BspACI CCGC 1 cut(s) 375
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 2 cut(s) 70, 106
BspDI ATCGAT 2 cut(s) 385, 726
BspPI GGATC 1 cut(s) 680
BsrGI TGTACA 2 cut(s) 391, 741
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 2 cut(s) 386, 685
BssT1I CCWWGG 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 193
BstAUI TGTACA 2 cut(s) 391, 741
BstBAI YACGTR 1 cut(s) 438
BstC8I GCNNGC 1 cut(s) 570
BstDEI CTNAG 3 cut(s) 78, 114, 344
BstDSI CCRYGG 1 cut(s) 145
BstF5I GGATG 2 cut(s) 230, 450
BstKTI GATC 2 cut(s) 389, 688
BstMAI GTCTC 2 cut(s) 74, 770
BstMBI GATC 2 cut(s) 386, 685
BstMWI GCNNNNNNNGC 1 cut(s) 644
BstNSI RCATGY 1 cut(s) 742
BstSCI CCNGG 1 cut(s) 294
BstSNI TACGTA 1 cut(s) 438
BstXI CCANNNNNNTGG 1 cut(s) 97
Bsu15I ATCGAT 2 cut(s) 385, 726
BsuI GTATCC 1 cut(s) 703
BsuRI GGCC 1 cut(s) 264
BsuTUI ATCGAT 2 cut(s) 385, 726
BtgI CCRYGG 1 cut(s) 145
BtsCI GGATG 2 cut(s) 230, 450
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 570
Cfr13I GGNCC 1 cut(s) 128
ClaI ATCGAT 2 cut(s) 385, 726
Csp6I GTAC 3 cut(s) 380, 392, 742
CspCI CAANNNNNGTGG 2 cut(s) 585, 620
CviAII CATG 6 cut(s) 146, 153, 466, 632, 701, 739
CviJI RGCY 4 cut(s) 264, 342, 601, 638
CviKI_1 RGCY 4 cut(s) 264, 342, 601, 638
CviQI GTAC 3 cut(s) 380, 392, 742
DdeI CTNAG 3 cut(s) 78, 114, 344
DpnI GATC 2 cut(s) 388, 687
DpnII GATC 2 cut(s) 386, 685
DraIII CACNNNGTG 1 cut(s) 93
Eco105I TACGTA 1 cut(s) 438
Eco130I CCWWGG 1 cut(s) 145
Eco147I AGGCCT 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 128
EcoRI GAATTC 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 6 cut(s) 149, 156, 469, 635, 704, 742
FaqI GGGAC 2 cut(s) 49, 550
FatI CATG 6 cut(s) 145, 152, 465, 631, 700, 738
FauI CCCGC 1 cut(s) 368
FokI GGATG 2 cut(s) 217, 437
FspBI CTAG 1 cut(s) 573
HaeIII GGCC 1 cut(s) 264
HapII CCGG 1 cut(s) 296
Hin1II CATG 6 cut(s) 149, 156, 469, 635, 704, 742
HinfI GANTC 6 cut(s) 226, 243, 291, 550, 749, 763
HpaII CCGG 1 cut(s) 296
Hpy166II GTNNAC 2 cut(s) 394, 505
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 2 cut(s) 394, 505
HpyAV CCTTC 2 cut(s) 145, 510
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 437
HpyCH4V TGCA 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 1 cut(s) 644
HpyF3I CTNAG 3 cut(s) 78, 114, 344
HpySE526I ACGT 1 cut(s) 437
Hsp92II CATG 6 cut(s) 149, 156, 469, 635, 704, 742
Kzo9I GATC 2 cut(s) 386, 685
LpnPI CCDG 4 cut(s) 62, 126, 309, 582
LweI GCATC 1 cut(s) 180
MaeI CTAG 1 cut(s) 573
MaeII ACGT 1 cut(s) 437
MaeIII GTNAC 1 cut(s) 193
MalI GATC 2 cut(s) 388, 687
MboI GATC 2 cut(s) 386, 685
MboII GAAGA 2 cut(s) 252, 375
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 3 cut(s) 19, 311, 352
MlyI GAGTC 1 cut(s) 772
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 9 cut(s) 77, 219, 275, 278, 281, 325, 469, 647, 708
MseI TTAA 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 399
MspI CCGG 1 cut(s) 296
MspR9I CCNGG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 644
NciI CCSGG 1 cut(s) 296
NcoI CCATGG 1 cut(s) 145
NdeII GATC 2 cut(s) 386, 685
NlaIII CATG 6 cut(s) 149, 156, 469, 635, 704, 742
NspI RCATGY 1 cut(s) 742
PceI AGGCCT 1 cut(s) 264
PfeI GAWTC 5 cut(s) 226, 243, 291, 550, 749
PfoI TCCNGGA 1 cut(s) 294
PleI GAGTC 1 cut(s) 771
PpsI GAGTC 1 cut(s) 771
Ppu21I YACGTR 1 cut(s) 438
PspPI GGNCC 1 cut(s) 128
RsaI GTAC 3 cut(s) 381, 393, 743
RsaNI GTAC 3 cut(s) 380, 392, 742
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 1 cut(s) 200
Sau3AI GATC 2 cut(s) 386, 685
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 772
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 1 cut(s) 120
SetI ASST 7 cut(s) 137, 259, 336, 440, 480, 640, 724
SfaNI GCATC 1 cut(s) 180
SinI GGWCC 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 399
SnaBI TACGTA 1 cut(s) 438
Sse9I AATT 3 cut(s) 19, 311, 352
SseBI AGGCCT 1 cut(s) 264
SsiI CCGC 1 cut(s) 375
SspMI CTAG 1 cut(s) 573
StuI AGGCCT 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 440
TaqI TCGA 3 cut(s) 385, 726, 777
TaqII GACCGA 1 cut(s) 116
TasI AATT 3 cut(s) 19, 311, 352
TatI WGTACW 2 cut(s) 391, 741
TfiI GAWTC 5 cut(s) 226, 243, 291, 550, 749
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 1 cut(s) 49
TspDTI ATGAA 5 cut(s) 17, 141, 339, 482, 620
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 1 cut(s) 352
XceI RCATGY 1 cut(s) 742
XspI CTAG 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.