Rh2AG180100

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000234
Physical Location & Seq
Reverse (-)
17278219 .. 17278623
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG180100.1

Sequence Viewer

Length: 405 bp
ATGAAAAGCGAAGTTTTCAGTAGGATTTTACTTCCTAGACTGCAAACTCCCAATGTGATTTGTTCCTATATTAGTCTTCAAGTGTTCAAGAAATCGCTGGCAGTGTTTCACTTCGATCGGTGCCCTTCCACTATTGACATATGGGTTCTGGAAACGGAGACTTGGAAAATGATTCACACCATTCGTCTGCCTGCTAGAAAGATAAAAGGAGAAATACCACAGCCTTTGTGCTTTGCTAAAAATGGTGGAGTTCATGTAGCTACATCAGCAAAGGGAGGGGAGAGTGGTTATTATTTGGGTGTATATGATCCTAAATCTCCTCGTGCTAAGGATACTAAAATAGGTATCGATTATCAAAGCATGTACATTGATTCCTATAAAGAGAGTCTCCTTTTACTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

134

Amino Acids

15.21

Weight (kDa)

9.13

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 120
AclWI GGATC 1 cut(s) 302
AfaI GTAC 1 cut(s) 365
AgsI TTSAA 2 cut(s) 80, 88
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
Alw26I GTCTC 2 cut(s) 152, 392
AlwI GGATC 1 cut(s) 302
BaeGI GKGCMC 1 cut(s) 125
BanI GGYRCC 1 cut(s) 120
BauI CACGAG 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 68
BciVI GTATCC 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 152, 392
BfaI CTAG 2 cut(s) 36, 195
BfuI GTATCC 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 68
Bpu10I CCTNAGC 1 cut(s) 327
Bsa29I ATCGAT 1 cut(s) 348
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
BseCI ATCGAT 1 cut(s) 348
BseRI GAGGAG 1 cut(s) 309
BseSI GKGCMC 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 118
BshNI GGYRCC 1 cut(s) 120
BshVI ATCGAT 1 cut(s) 348
BsiEI CGRYCG 1 cut(s) 118
BsmAI GTCTC 2 cut(s) 152, 392
Bsp1286I GDGCHC 1 cut(s) 125
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 2 cut(s) 115, 307
BspDI ATCGAT 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 122
BspPI GGATC 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 120
BsrGI TGTACA 1 cut(s) 363
BssMI GATC 2 cut(s) 115, 307
BssSI CACGAG 1 cut(s) 321
Bst2BI CACGAG 1 cut(s) 321
BstAUI TGTACA 1 cut(s) 363
BstC8I GCNNGC 2 cut(s) 99, 192
BstDEI CTNAG 1 cut(s) 327
BstKTI GATC 2 cut(s) 118, 310
BstMAI GTCTC 2 cut(s) 152, 392
BstMBI GATC 2 cut(s) 115, 307
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNSI RCATGY 1 cut(s) 364
BstSLI GKGCMC 1 cut(s) 125
BstV2I GAAGAC 1 cut(s) 68
Bsu15I ATCGAT 1 cut(s) 348
BsuI GTATCC 1 cut(s) 325
BsuTUI ATCGAT 1 cut(s) 348
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 2 cut(s) 99, 192
ClaI ATCGAT 1 cut(s) 348
Csp6I GTAC 1 cut(s) 364
CspCI CAANNNNNGTGG 2 cut(s) 207, 242
CviAII CATG 2 cut(s) 254, 361
CviJI RGCY 2 cut(s) 223, 260
CviKI_1 RGCY 2 cut(s) 223, 260
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 1 cut(s) 327
DpnI GATC 2 cut(s) 117, 309
DpnII GATC 2 cut(s) 115, 307
FaeI CATG 2 cut(s) 257, 364
FaiI YATR 8 cut(s) 69, 140, 142, 255, 304, 306, 362, 378
FatI CATG 2 cut(s) 253, 360
FauNDI CATATG 1 cut(s) 140
FspBI CTAG 2 cut(s) 36, 195
Hin1II CATG 2 cut(s) 257, 364
HinfI GANTC 3 cut(s) 172, 371, 385
Hpy188III TCNNGA 2 cut(s) 88, 149
HpyAV CCTTC 1 cut(s) 135
HpyCH4V TGCA 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 1 cut(s) 327
Hsp92II CATG 2 cut(s) 257, 364
Kzo9I GATC 2 cut(s) 115, 307
LpnPI CCDG 3 cut(s) 83, 134, 204
MaeI CTAG 2 cut(s) 36, 195
MalI GATC 2 cut(s) 117, 309
MboI GATC 2 cut(s) 115, 307
MboII GAAGA 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 125
MlyI GAGTC 1 cut(s) 394
MnlI CCTC 2 cut(s) 269, 330
MwoI GCNNNNNNNGC 1 cut(s) 266
NdeI CATATG 1 cut(s) 140
NdeII GATC 2 cut(s) 115, 307
NlaIII CATG 2 cut(s) 257, 364
NlaIV GGNNCC 1 cut(s) 122
NspI RCATGY 1 cut(s) 364
PfeI GAWTC 2 cut(s) 172, 371
Ple19I CGATCG 1 cut(s) 118
PleI GAGTC 1 cut(s) 393
PpsI GAGTC 1 cut(s) 393
PspN4I GGNNCC 1 cut(s) 122
PvuI CGATCG 1 cut(s) 118
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
Sau3AI GATC 2 cut(s) 115, 307
SchI GAGTC 1 cut(s) 394
SduI GDGCHC 1 cut(s) 125
SetI ASST 2 cut(s) 262, 346
SspMI CTAG 2 cut(s) 36, 195
TaqI TCGA 3 cut(s) 114, 348, 399
TatI WGTACW 1 cut(s) 363
TfiI GAWTC 2 cut(s) 172, 371
TscAI CASTG 1 cut(s) 108
TspDTI ATGAA 2 cut(s) 17, 242
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 1 cut(s) 108
XceI RCATGY 1 cut(s) 364
XspI CTAG 2 cut(s) 36, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.