Rh1CG177700

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000234
Physical Location & Seq
Reverse (-)
39208117 .. 39210132
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG177700.1

Sequence Viewer

Length: 1146 bp
ATGTTGAGCCGCCAAAACAAAATGAAACGACAAAGAGATGCTCTAGTGTTCATAGGCATGCCCCAAGAAATCTTGTTTGAAATCCTTGCAAGATTACCTGTGAAATCTCTGTTAAGGTTCAGATGTGTTTGCAAATATTGGAAGACTCTGATTAGTACCCCAGATTTAATTAATGCCCATCTAGAGAGGACTTCCATGAAAAGTACTCATGATCGTTTGCTTATCCAAACTAGGGAGCGTAGGATGGATGGAAAGTGCTTGTCACTCTTCTGTGCTGATACATTTGCCAAGTTTTCGGAGATAGAGCTTCCTATGATCAAAATTGAATCACATTTCCGTGTTGTGGTGGGTTCCTACAATGGAGTGGTTTGCTTATATGATAGTGATTTTGAAACTTATCTATGGAATCCATCAATCAGAAAATTCAAGAGACTTCCCCAGGTCCTCAATGATAGAAGGGGGCAATTAGCTCACTTTGCTATCTCGTTCGGGTTCCATCCTGAAGGTGATGACTATAAAGTTGTGAGAATTTTGACATTTGAACGTCGTTATATGATTGAGGTTGAGGTTGAGGTTTACAGCCATAGGTTGGAGTCTTGGAGAAGAATTAACGCAGTTCCCCCTAATTCACATGAACTGTATATTCAGGGAGAAGGCACATGTGTGAATGGAGTTGTGTACTGGGTCATAAAAGAGTCTTTCTCATCTTGCAACTCCATCCTTTCTTTTGATCTGGGCAATGAGATTTTTCAAACAGTGAGGCTTCCTGATAGTCTGCTCAGGGCGATTGGTGATCCGCGACGTTTTCCCCTTAGTATTCGAGTGTTTGATAAATCCCTTTCTGTGTTTCATGAAAGACGAGAGGAGAACAGTAGGTACTGTGACATATGGGTTCTGGAAATGGGTAGTTGGAAATTGTTTCACACGATGCTTCTCCCAGCTCGTGGATGTATAGCCTGGCCAGTGGGCTTTGCATCAAATGGTCAAGTTCATATTGTGATGTCAAGTAGAAAGTTTCGCAGCAAAACATTGGCTTTATATGATCTCAAATCACAACGAGTCAAGGATTTTAAAATCAAACTGCATGCGTATAGACCAAGCGGATACATTGATTATTTTAGGGAGAGTTTGGTGTTACTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

381

Amino Acids

44.76

Weight (kDa)

9.43

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 19 - 56 1.2e-11 F-box domain
F-box-like PF12937 20 - 56 1.2e-09 F-box-like
FBA_3 PF08268 111 - 361 1.8e-22 F-box associated beta propeller domain
FBA_1 PF07734 119 - 327 9.4e-20 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 589, 944
AccII CGCG 1 cut(s) 799
AciI CCGC 3 cut(s) 10, 797, 1101
AclWI GGATC 1 cut(s) 788
AcoI YGGCCR 1 cut(s) 959
AcsI RAATTY 2 cut(s) 422, 528
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 4 cut(s) 157, 205, 680, 878
AfiI CCNNNNNNNGG 4 cut(s) 232, 343, 589, 944
AflIII ACRYGT 1 cut(s) 659
AgsI TTSAA 6 cut(s) 80, 326, 392, 427, 542, 752
AjnI CCWGG 2 cut(s) 438, 956
AleI CACNNNNGTG 1 cut(s) 662
AluBI AGCT 3 cut(s) 307, 470, 941
AluI AGCT 3 cut(s) 307, 470, 941
Alw26I GTCTC 1 cut(s) 424
AlwI GGATC 1 cut(s) 788
AoxI GGCC 1 cut(s) 959
ApeKI GCWGC 1 cut(s) 1020
ApoI RAATTY 2 cut(s) 422, 528
AseI ATTAAT 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 442
AsuHPI GGTGA 2 cut(s) 518, 803
AvaII GGWCC 1 cut(s) 442
BalI TGGCCA 1 cut(s) 961
BauI CACGAG 1 cut(s) 942
BbsI GAAGAC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 1032
BccI CCATC 6 cut(s) 186, 238, 242, 418, 504, 725
BciT130I CCWGG 2 cut(s) 440, 958
BciVI GTATCC 1 cut(s) 1097
BclI TGATCA 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 424
BfaI CTAG 3 cut(s) 44, 182, 231
BfuI GTATCC 1 cut(s) 1097
BisI GCNGC 2 cut(s) 10, 1021
BlsI GCNGC 2 cut(s) 11, 1022
BmcAI AGTACT 1 cut(s) 205
Bme1390I CCNGG 2 cut(s) 440, 958
Bme18I GGWCC 1 cut(s) 442
BmgT120I GGNCC 1 cut(s) 442
BmiI GGNNCC 2 cut(s) 352, 494
BmrFI CCNGG 2 cut(s) 440, 958
BmrI ACTGGG 1 cut(s) 691
BmsI GCATC 3 cut(s) 28, 918, 983
BmuI ACTGGG 1 cut(s) 691
BpiI GAAGAC 1 cut(s) 149
BplI GAGNNNNNCTC 2 cut(s) 686, 718
Bpu10I CCTNAGC 1 cut(s) 779
BsaJI CCNNGG 1 cut(s) 438
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 343, 589, 944
Bse1I ACTGG 2 cut(s) 686, 962
Bse3DI GCAATG 1 cut(s) 745
BseBI CCWGG 2 cut(s) 440, 958
BseDI CCNNGG 1 cut(s) 438
BseGI GGATG 5 cut(s) 249, 253, 496, 717, 953
BseLI CCNNNNNNNGG 4 cut(s) 232, 343, 589, 944
BseMI GCAATG 1 cut(s) 745
BseMII CTCAG 1 cut(s) 793
BseNI ACTGG 2 cut(s) 686, 962
BseRI GAGGAG 1 cut(s) 878
BseXI GCAGC 1 cut(s) 1032
BseYI CCCAGC 1 cut(s) 937
Bsh1236I CGCG 1 cut(s) 799
BshFI GGCC 1 cut(s) 961
BslI CCNNNNNNNGG 4 cut(s) 232, 343, 589, 944
BsmAI GTCTC 1 cut(s) 424
BsnI GGCC 1 cut(s) 961
Bsp143I GATC 5 cut(s) 211, 315, 730, 793, 1042
BspACI CCGC 3 cut(s) 10, 797, 1101
BspANI GGCC 1 cut(s) 961
BspCNI CTCAG 1 cut(s) 792
BspFNI CGCG 1 cut(s) 799
BspHI TCATGA 2 cut(s) 208, 850
BspLI GGNNCC 2 cut(s) 352, 494
BspPI GGATC 1 cut(s) 788
BsrDI GCAATG 1 cut(s) 745
BsrI ACTGG 2 cut(s) 686, 962
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 5 cut(s) 211, 315, 730, 793, 1042
BssSI CACGAG 1 cut(s) 942
Bst2BI CACGAG 1 cut(s) 942
Bst2UI CCWGG 2 cut(s) 440, 958
Bst4CI ACNGT 4 cut(s) 639, 757, 872, 881
Bst6I CTCTTC 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 59, 1086
BstDEI CTNAG 2 cut(s) 779, 812
BstF5I GGATG 5 cut(s) 249, 253, 496, 717, 953
BstFNI CGCG 1 cut(s) 799
BstKTI GATC 5 cut(s) 214, 318, 733, 796, 1045
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 5 cut(s) 211, 315, 730, 793, 1042
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNI CCWGG 2 cut(s) 440, 958
BstNSI RCATGY 3 cut(s) 61, 663, 1088
BstSCI CCNGG 2 cut(s) 438, 956
BstUI CGCG 1 cut(s) 799
BstV1I GCAGC 1 cut(s) 1032
BstV2I GAAGAC 1 cut(s) 149
BsuI GTATCC 1 cut(s) 1097
BsuRI GGCC 1 cut(s) 961
BtsCI GGATG 5 cut(s) 249, 253, 496, 717, 953
BtsIMutI CAGTG 2 cut(s) 762, 969
Cac8I GCNNGC 2 cut(s) 59, 1086
CciI TCATGA 2 cut(s) 208, 850
Cfr13I GGNCC 1 cut(s) 442
Csp6I GTAC 4 cut(s) 156, 204, 679, 877
CviAII CATG 7 cut(s) 58, 196, 209, 632, 660, 851, 1085
CviQI GTAC 4 cut(s) 156, 204, 679, 877
DdeI CTNAG 2 cut(s) 779, 812
DpnI GATC 5 cut(s) 213, 317, 732, 795, 1044
DpnII GATC 5 cut(s) 211, 315, 730, 793, 1042
DraI TTTAAA 1 cut(s) 1072
EaeI YGGCCR 1 cut(s) 959
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 522
EcoO109I RGGNCCY 1 cut(s) 442
EcoRII CCWGG 2 cut(s) 438, 956
FaeI CATG 7 cut(s) 61, 199, 212, 635, 663, 854, 1088
FatI CATG 7 cut(s) 57, 195, 208, 631, 659, 850, 1084
FauNDI CATATG 1 cut(s) 887
FbaI TGATCA 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 10, 1021
FokI GGATG 5 cut(s) 256, 260, 483, 704, 960
Fsp4HI GCNGC 2 cut(s) 10, 1021
FspBI CTAG 3 cut(s) 44, 182, 231
GluI GCNGC 2 cut(s) 10, 1021
GsaI CCCAGC 1 cut(s) 941
HaeIII GGCC 1 cut(s) 961
Hin1II CATG 7 cut(s) 61, 199, 212, 635, 663, 854, 1088
HinfI GANTC 6 cut(s) 145, 326, 406, 593, 695, 1059
HphI GGTGA 2 cut(s) 518, 803
Hpy166II GTNNAC 2 cut(s) 577, 679
Hpy188I TCNGA 4 cut(s) 122, 150, 298, 419
Hpy188III TCNNGA 7 cut(s) 182, 209, 427, 500, 767, 851, 896
Hpy8I GTNNAC 2 cut(s) 577, 679
Hpy99I CGWCG 2 cut(s) 549, 804
HpyAV CCTTC 3 cut(s) 450, 497, 647
HpyCH4III ACNGT 4 cut(s) 639, 757, 872, 881
HpyCH4IV ACGT 2 cut(s) 544, 802
HpyCH4V TGCA 5 cut(s) 89, 132, 711, 974, 1084
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 2 cut(s) 779, 812
HpySE526I ACGT 2 cut(s) 544, 802
Hsp92II CATG 7 cut(s) 61, 199, 212, 635, 663, 854, 1088
Ksp22I TGATCA 1 cut(s) 315
Kzo9I GATC 5 cut(s) 211, 315, 730, 793, 1042
LmnI GCTCC 1 cut(s) 235
Lsp1109I GCAGC 1 cut(s) 1032
LweI GCATC 3 cut(s) 28, 918, 983
MaeI CTAG 3 cut(s) 44, 182, 231
MaeII ACGT 2 cut(s) 544, 802
MaeIII GTNAC 3 cut(s) 261, 881, 1134
MalI GATC 5 cut(s) 213, 317, 732, 795, 1044
MboI GATC 5 cut(s) 211, 315, 730, 793, 1042
MboII GAAGA 3 cut(s) 154, 259, 615
MlsI TGGCCA 1 cut(s) 961
MluCI AATT 8 cut(s) 168, 321, 422, 464, 528, 606, 625, 914
MluNI TGGCCA 1 cut(s) 961
MlyI GAGTC 4 cut(s) 139, 602, 704, 1068
MmeI TCCRAC 2 cut(s) 570, 890
MnlI CCTC 7 cut(s) 180, 455, 553, 559, 565, 753, 856
Mox20I TGGCCA 1 cut(s) 961
MscI TGGCCA 1 cut(s) 961
MseI TTAA 5 cut(s) 113, 167, 171, 609, 1071
MslI CAYNNNNRTG 3 cut(s) 56, 336, 662
Msp20I TGGCCA 1 cut(s) 961
MspR9I CCNGG 2 cut(s) 440, 958
MvaI CCWGG 2 cut(s) 440, 958
MvnI CGCG 1 cut(s) 799
MwoI GCNNNNNNNGC 1 cut(s) 476
NdeI CATATG 1 cut(s) 887
NdeII GATC 5 cut(s) 211, 315, 730, 793, 1042
NlaIII CATG 7 cut(s) 61, 199, 212, 635, 663, 854, 1088
NlaIV GGNNCC 2 cut(s) 352, 494
NmuCI GTSAC 2 cut(s) 261, 881
NspI RCATGY 3 cut(s) 61, 663, 1088
OliI CACNNNNGTG 1 cut(s) 662
PacI TTAATTAA 1 cut(s) 171
PaeI GCATGC 2 cut(s) 61, 1088
PagI TCATGA 2 cut(s) 208, 850
PciI ACATGT 1 cut(s) 659
PfeI GAWTC 2 cut(s) 326, 406
PflMI CCANNNNNTGG 2 cut(s) 589, 944
PkrI GCNGC 2 cut(s) 11, 1022
PleI GAGTC 4 cut(s) 139, 601, 703, 1067
PpsI GAGTC 4 cut(s) 139, 601, 703, 1067
PpuMI RGGWCCY 1 cut(s) 442
PscI ACATGT 1 cut(s) 659
PshBI ATTAAT 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 442
Psp6I CCWGG 2 cut(s) 438, 956
PspFI CCCAGC 1 cut(s) 937
PspGI CCWGG 2 cut(s) 438, 956
PspN4I GGNNCC 2 cut(s) 352, 494
PspPI GGNCC 1 cut(s) 442
PspPPI RGGWCCY 1 cut(s) 442
PsrI GAACNNNNNNTAC 2 cut(s) 860, 892
RsaI GTAC 4 cut(s) 157, 205, 680, 878
RsaNI GTAC 4 cut(s) 156, 204, 679, 877
RseI CAYNNNNRTG 3 cut(s) 56, 336, 662
SaqAI TTAA 5 cut(s) 113, 167, 171, 609, 1071
SatI GCNGC 2 cut(s) 10, 1021
Sau3AI GATC 5 cut(s) 211, 315, 730, 793, 1042
Sau96I GGNCC 1 cut(s) 442
ScaI AGTACT 1 cut(s) 205
SchI GAGTC 4 cut(s) 139, 602, 704, 1068
ScrFI CCNGG 2 cut(s) 440, 958
SfaNI GCATC 3 cut(s) 28, 918, 983
SinI GGWCC 1 cut(s) 442
SmiMI CAYNNNNRTG 3 cut(s) 56, 336, 662
SphI GCATGC 2 cut(s) 61, 1088
Sse9I AATT 8 cut(s) 168, 321, 422, 464, 528, 606, 625, 914
SsiI CCGC 3 cut(s) 10, 797, 1101
SspI AATATT 1 cut(s) 137
SspMI CTAG 3 cut(s) 44, 182, 231
StyD4I CCNGG 2 cut(s) 438, 956
TaaI ACNGT 4 cut(s) 639, 757, 872, 881
TaiI ACGT 2 cut(s) 547, 805
TaqI TCGA 2 cut(s) 820, 1140
TasI AATT 8 cut(s) 168, 321, 422, 464, 528, 606, 625, 914
TatI WGTACW 2 cut(s) 203, 678
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 2 cut(s) 326, 406
Tru1I TTAA 5 cut(s) 113, 167, 171, 609, 1071
Tru9I TTAA 5 cut(s) 113, 167, 171, 609, 1071
TscAI CASTG 2 cut(s) 762, 969
TseFI GTSAC 2 cut(s) 261, 881
TseI GCWGC 1 cut(s) 1020
Tsp45I GTSAC 2 cut(s) 261, 881
TspDTI ATGAA 7 cut(s) 38, 40, 212, 648, 839, 867, 980
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 2 cut(s) 762, 969
Van91I CCANNNNNTGG 2 cut(s) 589, 944
VpaK11BI GGWCC 1 cut(s) 442
VspI ATTAAT 1 cut(s) 171
XapI RAATTY 2 cut(s) 422, 528
XbaI TCTAGA 1 cut(s) 181
XceI RCATGY 3 cut(s) 61, 663, 1088
XspI CTAG 3 cut(s) 44, 182, 231
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.