FvH4_6g33750

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000234
Physical Location & Seq
Forward (+)
26736955 .. 26737497
543 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33750.t1

Sequence Viewer

Length: 543 bp
ATGAGAAGAAACAAATGCAAGAAGCGTAGTAGTAGTGGTGTCAGTTATATCCCTGAAGAAATCTTGATCAACATCCTAGCAAGATTGCCTGTAAAGTCCCTCCTTCGGTTTAGGTGTGTATCCCGGTCATGGTGTGGTTTAATTGGCAGCTCAAGTTTTGTTAGTACACATCTTAATAGGAATGTTGCAAAACTTTCGCATACCTATCTAATTGCCCTCCAGCGCTCGAGAGATAAACCAGCGCTTTGCCATTCTCTATTTTCTACTGATACATTTGAGGAGTGTTTGAAATTAAGACATCCATTGTGGACTGAAGAGCAATTTAGGATATATGGTTCAAGTAATGGGCTAATTTGTATTTCGGATCAAGTACTGCGTCCGGGTAGTCCTATATGCATATGGAATCCATGTATTAGGAAATTCAAGACTCTTCCACAATCAAGATTCAATCCACATTATTCCAGTTATGATTTATCTCTCTCATTTGGGTTCCACCCAGAGCTGAATGACTACAGAGTGGTAAAAATGGGGTGGTATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

181

Amino Acids

20.86

Weight (kDa)

9.75

Isoelectric Point (pI)

70.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 16 - 50 7.3e-09 F-box-like
F-box PF00646 17 - 53 9.3e-11 F-box domain
FBA_3 PF08268 83 - 176 3.2e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 372
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 2 cut(s) 75, 333
AfaI GTAC 2 cut(s) 166, 372
AfeI AGCGCT 2 cut(s) 224, 243
AfiI CCNNNNNNNGG 2 cut(s) 105, 129
AgsI TTSAA 4 cut(s) 289, 339, 424, 448
AloI GAACNNNNNNTCC 2 cut(s) 319, 351
AluBI AGCT 2 cut(s) 150, 502
AluI AGCT 2 cut(s) 150, 502
AlwI GGATC 1 cut(s) 372
Ama87I CYCGRG 1 cut(s) 226
Aor51HI AGCGCT 2 cut(s) 224, 243
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 1 cut(s) 419
AspLEI GCGC 2 cut(s) 225, 244
AsuC2I CCSGG 2 cut(s) 124, 381
AvaI CYCGRG 1 cut(s) 226
BbvI GCAGC 1 cut(s) 159
BcgI CGANNNNNNTGC 2 cut(s) 177, 211
BciVI GTATCC 1 cut(s) 130
BclI TGATCA 1 cut(s) 66
BcnI CCSGG 2 cut(s) 124, 381
BfaI CTAG 1 cut(s) 77
BfmI CTRYAG 1 cut(s) 511
BfoI RGCGCY 2 cut(s) 226, 245
BfuI GTATCC 1 cut(s) 130
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
BmcAI AGTACT 1 cut(s) 372
Bme1390I CCNGG 2 cut(s) 124, 381
BmeT110I CYCGRG 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 491
BmrFI CCNGG 2 cut(s) 124, 381
BpmI CTGGAG 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 136
BpuMI CCSGG 2 cut(s) 124, 381
BsaBI GATNNNNATC 1 cut(s) 71
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 129
Bse1I ACTGG 1 cut(s) 462
Bse8I GATNNNNATC 1 cut(s) 71
BseGI GGATG 2 cut(s) 72, 298
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 2 cut(s) 105, 129
BseNI ACTGG 1 cut(s) 462
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 2 cut(s) 124, 380
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 2 cut(s) 105, 129
BsmFI GGGAC 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 226
Bsp143I GATC 2 cut(s) 66, 364
BspLI GGNNCC 1 cut(s) 491
BspPI GGATC 1 cut(s) 372
BspQI GCTCTTC 1 cut(s) 309
BsrI ACTGG 1 cut(s) 462
BssMI GATC 2 cut(s) 66, 364
Bst6I CTCTTC 2 cut(s) 309, 435
BstF5I GGATG 2 cut(s) 72, 298
BstH2I RGCGCY 2 cut(s) 226, 245
BstHHI GCGC 2 cut(s) 225, 244
BstKTI GATC 2 cut(s) 69, 367
BstMBI GATC 2 cut(s) 66, 364
BstSCI CCNGG 2 cut(s) 122, 379
BstSFI CTRYAG 1 cut(s) 511
BstV1I GCAGC 1 cut(s) 159
BsuI GTATCC 1 cut(s) 130
BtsCI GGATG 2 cut(s) 72, 298
CfoI GCGC 2 cut(s) 225, 244
CseI GACGC 1 cut(s) 365
Csp6I GTAC 2 cut(s) 165, 371
CviAII CATG 2 cut(s) 129, 408
CviJI RGCY 3 cut(s) 150, 349, 502
CviKI_1 RGCY 3 cut(s) 150, 349, 502
CviQI GTAC 2 cut(s) 165, 371
DpnI GATC 2 cut(s) 68, 366
DpnII GATC 2 cut(s) 66, 364
Eam1104I CTCTTC 2 cut(s) 309, 435
EarI CTCTTC 2 cut(s) 309, 435
Eco47III AGCGCT 2 cut(s) 224, 243
Eco57I CTGAAG 2 cut(s) 75, 333
Eco88I CYCGRG 1 cut(s) 226
EcoT22I ATGCAT 1 cut(s) 398
FaeI CATG 2 cut(s) 132, 411
FaqI GGGAC 1 cut(s) 82
FatI CATG 2 cut(s) 128, 407
FauNDI CATATG 1 cut(s) 398
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 148
FokI GGATG 2 cut(s) 59, 285
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 1 cut(s) 77
GlaI GCGC 2 cut(s) 224, 243
GluI GCNGC 1 cut(s) 148
GsuI CTGGAG 1 cut(s) 203
HaeII RGCGCY 2 cut(s) 226, 245
HapII CCGG 2 cut(s) 124, 380
HgaI GACGC 1 cut(s) 365
HhaI GCGC 2 cut(s) 225, 244
Hin1II CATG 2 cut(s) 132, 411
Hin6I GCGC 2 cut(s) 223, 242
HinP1I GCGC 2 cut(s) 223, 242
HinfI GANTC 3 cut(s) 403, 427, 444
HpaII CCGG 2 cut(s) 124, 380
Hpy166II GTNNAC 2 cut(s) 167, 309
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 4 cut(s) 64, 228, 424, 441
Hpy8I GTNNAC 2 cut(s) 167, 309
HpyAV CCTTC 1 cut(s) 113
HpyCH4V TGCA 3 cut(s) 18, 188, 396
Hsp92II CATG 2 cut(s) 132, 411
HspAI GCGC 2 cut(s) 223, 242
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 2 cut(s) 66, 364
LguI GCTCTTC 1 cut(s) 309
LpnPI CCDG 8 cut(s) 66, 102, 137, 233, 252, 393, 475, 510
Lsp1109I GCAGC 1 cut(s) 159
MaeI CTAG 1 cut(s) 77
MalI GATC 2 cut(s) 68, 366
MboI GATC 2 cut(s) 66, 364
MboII GAAGA 4 cut(s) 18, 68, 326, 422
MluCI AATT 6 cut(s) 141, 210, 290, 320, 351, 419
MlyI GAGTC 1 cut(s) 421
MnlI CCTC 3 cut(s) 110, 227, 271
Mph1103I ATGCAT 1 cut(s) 398
MseI TTAA 3 cut(s) 140, 174, 293
MspI CCGG 2 cut(s) 124, 380
MspR9I CCNGG 2 cut(s) 124, 381
NciI CCSGG 2 cut(s) 124, 381
NdeI CATATG 1 cut(s) 398
NdeII GATC 2 cut(s) 66, 364
NlaIII CATG 2 cut(s) 132, 411
NlaIV GGNNCC 1 cut(s) 491
NsiI ATGCAT 1 cut(s) 398
PaeR7I CTCGAG 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 309
PfeI GAWTC 2 cut(s) 403, 444
PkrI GCNGC 1 cut(s) 149
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
PspN4I GGNNCC 1 cut(s) 491
RsaI GTAC 2 cut(s) 166, 372
RsaNI GTAC 2 cut(s) 165, 371
SapI GCTCTTC 1 cut(s) 309
SaqAI TTAA 3 cut(s) 140, 174, 293
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 2 cut(s) 66, 364
ScaI AGTACT 1 cut(s) 372
SchI GAGTC 1 cut(s) 421
ScrFI CCNGG 2 cut(s) 124, 381
SetI ASST 4 cut(s) 116, 152, 206, 504
SfcI CTRYAG 1 cut(s) 511
Sfr274I CTCGAG 1 cut(s) 226
SlaI CTCGAG 1 cut(s) 226
SmlI CTYRAG 2 cut(s) 151, 226
SmoI CTYRAG 2 cut(s) 151, 226
Sse9I AATT 6 cut(s) 141, 210, 290, 320, 351, 419
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 2 cut(s) 122, 379
TaqI TCGA 1 cut(s) 227
TasI AATT 6 cut(s) 141, 210, 290, 320, 351, 419
TatI WGTACW 2 cut(s) 164, 370
TfiI GAWTC 2 cut(s) 403, 444
Tru1I TTAA 3 cut(s) 140, 174, 293
Tru9I TTAA 3 cut(s) 140, 174, 293
TseI GCWGC 1 cut(s) 147
XapI RAATTY 1 cut(s) 419
XhoI CTCGAG 1 cut(s) 226
XspI CTAG 1 cut(s) 77
ZrmI AGTACT 1 cut(s) 372
Zsp2I ATGCAT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.