FvH4_6g33770

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000234
Physical Location & Seq
Reverse (-)
26756642 .. 26758241
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33770.t1

Sequence Viewer

Length: 1104 bp
ATGGCGTCCACAATTTGTAAGAAAGAAATCTTGATGGACATCCTCGTAAGACTACCAGCAAAAACCCTAATGCGGTTTCTATGTGCATGCAAAGCATGGAGTGATATGATCAGCAGCCCTGATTTTGTCTCTAAAAATCTTAACACGAATTTCACGAAACGCAAAAATATGCATCTAATTTGCCTCCACAAACTTTTGGTCGATACGGATGATCCAGATGACGACCAACCTATATGGTCTTTCTTTCACTATGAAACATTTGAGCAGGGCTTGAGGTTAAGCCATCCCTCAGGGAGCACAGAACATTATGGGATTTATGGTTCGAGCATTGGATTAGTTTGCATTTCGCATACTGAAGAAGGTTTGAGTTGCAGGAGTCCTATAATCATATGGAATCCATCTATCAATAAATTTAAGACGCTTCCATCAAGCACAAACAATAAGTTCCGATACATGTCCCTCCAGTTTGGGTACCATCCTGGCGATAATGACTACAAGGTAGTAAGAATGATCTGGTTTAACAAGGATGTTTTCGCAGTCGAAGTTTATTCTCTTAGCAGCAACTCTTGGAAGATATTTGAAGAAATTCCTCCATGGTTAAAATACAATTTTAAACATCATGAAGGTACATTCATAAATGGAGTAGCCTACCGAATTCTCGAGAAGCATTATATGTATACCCTCATGTCTTTCGATTCAGTCACGGAAGAATTTGAAGAATTCATATTACCAGAATCTATCATCAATTCACATAATTTACATCTACACTCTTTCGAGGAAAAGCCTTGCTTGATGTCTCACTGGTACTGTTCTGATGAGGAGGACTGGGATAGAGATGAGTTCTGGGTCCTTGAAGACAAACGTTGGAAACGTAATCGTCCTTTTTATTATCCTAAGAATGGTTATAGTACAATGGGGGTTATAGATGATAATGTGCTTATGAAAAAAAATGATTACAGAAATGGCGTAGTAGACTTGTTTTTTGTGAATTACGAAACCAGGGAAGATCGTACAACAGGAATTAAGTTGGCCATCACGAGAATAGGCTATGAAGAAGTGTTTTATGTATTTCCCTACACAGAGAGTTTGGTATTACTGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

368

Amino Acids

43.45

Weight (kDa)

5.79

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 101 - 292 2e-22 F-box associated beta propeller domain
FBA_1 PF07734 112 - 265 4.8e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 471
AccB1I GGYRCC 1 cut(s) 471
AccI GTMKAC 2 cut(s) 677, 972
AciI CCGC 1 cut(s) 73
AclI AACGTT 1 cut(s) 862
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 1029
AcsI RAATTY 6 cut(s) 148, 410, 585, 654, 710, 719
AcuI CTGAAG 1 cut(s) 375
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 5 cut(s) 473, 628, 806, 910, 1012
AfiI CCNNNNNNNGG 2 cut(s) 72, 899
AflIII ACRYGT 1 cut(s) 453
AgsI TTSAA 3 cut(s) 581, 716, 854
AjnI CCWGG 2 cut(s) 478, 998
AloI GAACNNNNNNTCC 2 cut(s) 304, 336
Alw21I GWGCWC 1 cut(s) 299
Alw26I GTCTC 2 cut(s) 133, 801
AlwI GGATC 1 cut(s) 206
Ama87I CYCGRG 1 cut(s) 659
AoxI GGCC 1 cut(s) 1029
ApeKI GCWGC 2 cut(s) 114, 558
ApoI RAATTY 6 cut(s) 148, 410, 585, 654, 710, 719
ArsI GACNNNNNNTTYG 4 cut(s) 183, 215, 965, 997
Asp700I GAANNNNTTC 1 cut(s) 585
Asp718I GGTACC 1 cut(s) 471
AspS9I GGNCC 1 cut(s) 847
AvaI CYCGRG 1 cut(s) 659
AvaII GGWCC 1 cut(s) 847
AxyI CCTNAGG 1 cut(s) 289
BalI TGGCCA 1 cut(s) 1031
BanI GGYRCC 1 cut(s) 471
BauI CACGAG 1 cut(s) 1036
BbsI GAAGAC 1 cut(s) 861
Bbv12I GWGCWC 1 cut(s) 299
BbvI GCAGC 2 cut(s) 126, 570
BccI CCATC 6 cut(s) 28, 291, 406, 433, 483, 1040
BciT130I CCWGG 2 cut(s) 480, 1000
BclI TGATCA 1 cut(s) 108
BcoDI GTCTC 2 cut(s) 133, 801
BisI GCNGC 2 cut(s) 115, 559
BlsI GCNGC 2 cut(s) 116, 560
Bme1390I CCNGG 2 cut(s) 480, 1000
Bme18I GGWCC 1 cut(s) 847
BmeT110I CYCGRG 1 cut(s) 659
BmgT120I GGNCC 1 cut(s) 847
BmiI GGNNCC 2 cut(s) 473, 848
BmrFI CCNGG 2 cut(s) 480, 1000
BmrI ACTGGG 1 cut(s) 835
BmsI GCATC 1 cut(s) 181
BmuI ACTGGG 1 cut(s) 835
BpiI GAAGAC 1 cut(s) 861
BpmI CTGGAG 1 cut(s) 446
BpuEI CTTGAG 1 cut(s) 292
BsaBI GATNNNNATC 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 593, 999
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 899
Bse1I ACTGG 3 cut(s) 463, 806, 830
Bse21I CCTNAGG 1 cut(s) 289
Bse8I GATNNNNATC 1 cut(s) 38
BseBI CCWGG 2 cut(s) 480, 1000
BseDI CCNNGG 2 cut(s) 593, 999
BseGI GGATG 5 cut(s) 39, 214, 283, 475, 532
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 2 cut(s) 72, 899
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 3 cut(s) 463, 806, 830
BseRI GAGGAG 1 cut(s) 833
BseXI GCAGC 2 cut(s) 126, 570
BshFI GGCC 1 cut(s) 1031
BshNI GGYRCC 1 cut(s) 471
BsiHKAI GWGCWC 1 cut(s) 299
BsiHKCI CYCGRG 1 cut(s) 659
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 2 cut(s) 72, 899
BsmAI GTCTC 2 cut(s) 133, 801
BsmFI GGGAC 1 cut(s) 442
BsnI GGCC 1 cut(s) 1031
BsoBI CYCGRG 1 cut(s) 659
Bsp1286I GDGCHC 1 cut(s) 299
Bsp143I GATC 4 cut(s) 108, 211, 510, 1006
Bsp19I CCATGG 1 cut(s) 593
BspACI CCGC 1 cut(s) 73
BspANI GGCC 1 cut(s) 1031
BspCNI CTCAG 1 cut(s) 302
BspHI TCATGA 1 cut(s) 619
BspLI GGNNCC 2 cut(s) 473, 848
BspPI GGATC 1 cut(s) 206
BspT107I GGYRCC 1 cut(s) 471
BsrI ACTGG 3 cut(s) 463, 806, 830
BssECI CCNNGG 2 cut(s) 593, 999
BssMI GATC 4 cut(s) 108, 211, 510, 1006
BssNAI GTATAC 1 cut(s) 678
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 1036
BssT1I CCWWGG 1 cut(s) 593
Bst1107I GTATAC 1 cut(s) 678
Bst2BI CACGAG 1 cut(s) 1036
Bst2UI CCWGG 2 cut(s) 480, 1000
Bst4CI ACNGT 1 cut(s) 809
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 3 cut(s) 289, 554, 894
BstDSI CCRYGG 1 cut(s) 593
BstF5I GGATG 5 cut(s) 39, 214, 283, 475, 532
BstKTI GATC 4 cut(s) 111, 214, 513, 1009
BstMAI GTCTC 2 cut(s) 133, 801
BstMBI GATC 4 cut(s) 108, 211, 510, 1006
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 2 cut(s) 480, 1000
BstNSI RCATGY 2 cut(s) 90, 457
BstSCI CCNGG 2 cut(s) 478, 998
BstV1I GCAGC 2 cut(s) 126, 570
BstV2I GAAGAC 1 cut(s) 861
BstZ17I GTATAC 1 cut(s) 678
Bsu36I CCTNAGG 1 cut(s) 289
BsuRI GGCC 1 cut(s) 1031
BtgI CCRYGG 1 cut(s) 593
BtsCI GGATG 5 cut(s) 39, 214, 283, 475, 532
BtsIMutI CAGTG 1 cut(s) 799
Cac8I GCNNGC 1 cut(s) 88
CciI TCATGA 1 cut(s) 619
Cfr13I GGNCC 1 cut(s) 847
CseI GACGC 1 cut(s) 427
Csp6I GTAC 5 cut(s) 472, 627, 805, 909, 1011
CviAII CATG 6 cut(s) 87, 96, 454, 594, 620, 685
CviJI RGCY 7 cut(s) 117, 270, 282, 647, 784, 1031, 1047
CviKI_1 RGCY 7 cut(s) 117, 270, 282, 647, 784, 1031, 1047
CviQI GTAC 5 cut(s) 472, 627, 805, 909, 1011
DdeI CTNAG 3 cut(s) 289, 554, 894
DpnI GATC 4 cut(s) 110, 213, 512, 1008
DpnII GATC 4 cut(s) 108, 211, 510, 1006
DraI TTTAAA 1 cut(s) 613
EaeI YGGCCR 1 cut(s) 1029
Eco130I CCWWGG 1 cut(s) 593
Eco47I GGWCC 1 cut(s) 847
Eco57I CTGAAG 1 cut(s) 375
Eco81I CCTNAGG 1 cut(s) 289
Eco88I CYCGRG 1 cut(s) 659
EcoO109I RGGNCCY 1 cut(s) 847
EcoRI GAATTC 2 cut(s) 654, 719
EcoRII CCWGG 2 cut(s) 478, 998
EcoT14I CCWWGG 1 cut(s) 593
EcoT22I ATGCAT 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 593
FaeI CATG 6 cut(s) 90, 99, 457, 597, 623, 688
FalI AAGNNNNNCTT 2 cut(s) 773, 805
FaqI GGGAC 1 cut(s) 442
FatI CATG 6 cut(s) 86, 95, 453, 593, 619, 684
FauNDI CATATG 1 cut(s) 389
FbaI TGATCA 1 cut(s) 108
FblI GTMKAC 2 cut(s) 677, 972
Fnu4HI GCNGC 2 cut(s) 115, 559
FokI GGATG 5 cut(s) 26, 221, 270, 462, 539
Fsp4HI GCNGC 2 cut(s) 115, 559
GluI GCNGC 2 cut(s) 115, 559
GsuI CTGGAG 1 cut(s) 446
HaeIII GGCC 1 cut(s) 1031
HgaI GACGC 1 cut(s) 427
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 90, 99, 457, 597, 623, 688
HinfI GANTC 4 cut(s) 376, 394, 695, 734
Hpy166II GTNNAC 3 cut(s) 9, 678, 973
Hpy188I TCNGA 2 cut(s) 449, 814
Hpy188III TCNNGA 7 cut(s) 31, 154, 215, 620, 659, 661, 1036
Hpy8I GTNNAC 3 cut(s) 9, 678, 973
HpyAV CCTTC 2 cut(s) 353, 617
HpyCH4III ACNGT 1 cut(s) 809
HpyCH4IV ACGT 2 cut(s) 862, 871
HpyCH4V TGCA 5 cut(s) 86, 90, 172, 342, 372
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 3 cut(s) 289, 554, 894
HpySE526I ACGT 2 cut(s) 862, 871
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 90, 99, 457, 597, 623, 688
KpnI GGTACC 1 cut(s) 475
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 4 cut(s) 108, 211, 510, 1006
LmnI GCTCC 1 cut(s) 294
Lsp1109I GCAGC 2 cut(s) 126, 570
LweI GCATC 1 cut(s) 181
MaeII ACGT 2 cut(s) 862, 871
MaeIII GTNAC 1 cut(s) 700
MalI GATC 4 cut(s) 110, 213, 512, 1008
MboI GATC 4 cut(s) 108, 211, 510, 1006
MboII GAAGA 8 cut(s) 368, 583, 593, 719, 728, 866, 1016, 1064
MhlI GDGCHC 1 cut(s) 299
MlsI TGGCCA 1 cut(s) 1031
MluNI TGGCCA 1 cut(s) 1031
MlyI GAGTC 1 cut(s) 385
MmeI TCCRAC 1 cut(s) 845
Mox20I TGGCCA 1 cut(s) 1031
Mph1103I ATGCAT 1 cut(s) 174
MroXI GAANNNNTTC 1 cut(s) 585
MscI TGGCCA 1 cut(s) 1031
MseI TTAA 7 cut(s) 141, 278, 414, 519, 599, 612, 1023
Msp20I TGGCCA 1 cut(s) 1031
MspR9I CCNGG 2 cut(s) 480, 1000
MvaI CCWGG 2 cut(s) 480, 1000
MwoI GCNNNNNNNGC 1 cut(s) 92
NcoI CCATGG 1 cut(s) 593
NdeI CATATG 1 cut(s) 389
NdeII GATC 4 cut(s) 108, 211, 510, 1006
NlaIII CATG 6 cut(s) 90, 99, 457, 597, 623, 688
NlaIV GGNNCC 2 cut(s) 473, 848
NmuCI GTSAC 1 cut(s) 700
NsiI ATGCAT 1 cut(s) 174
NspI RCATGY 2 cut(s) 90, 457
PaeI GCATGC 1 cut(s) 90
PaeR7I CTCGAG 1 cut(s) 659
PagI TCATGA 1 cut(s) 619
PciI ACATGT 1 cut(s) 453
PcsI WCGNNNNNNNCGW 2 cut(s) 152, 868
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 3 cut(s) 394, 695, 734
PkrI GCNGC 2 cut(s) 116, 560
PleI GAGTC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 384
PpuMI RGGWCCY 1 cut(s) 847
PscI ACATGT 1 cut(s) 453
Psp1406I AACGTT 1 cut(s) 862
Psp5II RGGWCCY 1 cut(s) 847
Psp6I CCWGG 2 cut(s) 478, 998
PspGI CCWGG 2 cut(s) 478, 998
PspN4I GGNNCC 2 cut(s) 473, 848
PspPI GGNCC 1 cut(s) 847
PspPPI RGGWCCY 1 cut(s) 847
RsaI GTAC 5 cut(s) 473, 628, 806, 910, 1012
RsaNI GTAC 5 cut(s) 472, 627, 805, 909, 1011
SaqAI TTAA 7 cut(s) 141, 278, 414, 519, 599, 612, 1023
SatI GCNGC 2 cut(s) 115, 559
Sau3AI GATC 4 cut(s) 108, 211, 510, 1006
Sau96I GGNCC 1 cut(s) 847
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 2 cut(s) 480, 1000
SduI GDGCHC 1 cut(s) 299
SetI ASST 7 cut(s) 232, 278, 364, 501, 628, 865, 874
SfaNI GCATC 1 cut(s) 181
Sfr274I CTCGAG 1 cut(s) 659
SinI GGWCC 1 cut(s) 847
SlaI CTCGAG 1 cut(s) 659
SmlI CTYRAG 2 cut(s) 271, 659
SmoI CTYRAG 2 cut(s) 271, 659
SphI GCATGC 1 cut(s) 90
SsiI CCGC 1 cut(s) 73
StyD4I CCNGG 2 cut(s) 478, 998
StyI CCWWGG 1 cut(s) 593
TaaI ACNGT 1 cut(s) 809
TaiI ACGT 2 cut(s) 865, 874
TaqI TCGA 6 cut(s) 201, 323, 540, 660, 693, 774
TatI WGTACW 1 cut(s) 908
TfiI GAWTC 3 cut(s) 394, 695, 734
Tru1I TTAA 7 cut(s) 141, 278, 414, 519, 599, 612, 1023
Tru9I TTAA 7 cut(s) 141, 278, 414, 519, 599, 612, 1023
TscAI CASTG 1 cut(s) 806
TseFI GTSAC 1 cut(s) 700
TseI GCWGC 2 cut(s) 114, 558
Tsp45I GTSAC 1 cut(s) 700
TspDTI ATGAA 6 cut(s) 267, 622, 636, 712, 956, 1065
TspGWI ACGGA 2 cut(s) 221, 719
TspRI CASTG 1 cut(s) 806
VpaK11BI GGWCC 1 cut(s) 847
XapI RAATTY 6 cut(s) 148, 410, 585, 654, 710, 719
XceI RCATGY 2 cut(s) 90, 457
XhoI CTCGAG 1 cut(s) 659
XmiI GTMKAC 2 cut(s) 677, 972
XmnI GAANNNNTTC 1 cut(s) 585
Zsp2I ATGCAT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.