FvH4_7g08973

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000234
Physical Location & Seq
Forward (+)
8785504 .. 8786595
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08973.t1

Sequence Viewer

Length: 1092 bp
ATGTCAACTATGGAGCAAGGCACACAAAGGGATGCACAATTGTTGGAATTCATACCCGACGAAATTATGTTTGAAATACTCACAAGATTACCAGTGAGATCTTTACTGAGATTCAAATGTGTGTGCAAGTCTTGGAACTCATTGATCAGCAGTCCAAATTTCAACACCCATCTTGATGCTTCTTCTGACTATATACTTGTCACGACTGGGCTGACTTGCAGTACAAAGTCACTGTTTTCACTGTACTGTGCAAAAACATTTACGAAGCATATGGACCTAGATCTTGGAAGTTGCGAGATGAATTTCGTTTCCAATGGTTTCTTTGTCTCGATCTGTTCTACGTGCAATGGGTTACTGCTCATCTGTGCTACTTATTCTGGGCTGTATATATGGAATCCATCAATCAGAAAAATCAAGAGACTTCCACAAGGTCGTTACAAACAAGGTCTTTATGTCTGTGTCGGGTTTGGATTTCACCATCAGAAAAACGACTATAAAGTTGTAAGAATTATTCGACTCCAGAAAGATATGTACACAACTGAGGTCTACTCCCTTAAGTTGAATTCATGGAGAGACGTTGCTGCAGTTCTCCCCATTTCTATCGACTCTAGATACCTAATAACCACATGTGCTTTACATGTGAATGGAGTTGTGTACTGGAAGGTAAGGGTGAAGGACTCTGCAAGATATTGCATACTCTCTTTTGATATGGACAATGAGGTTTTTAGCAGCAGAGAACTTCCTGAAAAGGTAGTCGGAGTGGATCGAGATTCTGCAATCCGTGTGTTTGAGAATTCCCTTTCTGTGATACAAATGAGACAAGATGGGAATCATCATCATGTTAGTTGCTGTGATATCTGGGTTATGGGACTGGATACCTGGAATATGATGCCCACGATTTTTCTACCGCTCAATGCATGGCCATCGAGCTTTACAAAAGATGGAGCTTGTATTGCAAGGCTGGATGAAAATAGAACTTTGGTCCTATATGATCCTATATCGCAAGAGGCTAAGGAAATTACCAGAGTTGAAGGGCGTGAATATTGCAATGTGGTCGGTACTTATAAAGAGAGTCTAGTTTTACTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

364

Amino Acids

41.55

Weight (kDa)

7.47

Isoelectric Point (pI)

30.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 17 - 53 1e-09 F-box-like
F-box PF00646 18 - 55 8.2e-12 F-box domain
FBA_3 PF08268 92 - 289 2.2e-20 F-box associated beta propeller domain
FBA_1 PF07734 110 - 290 1.4e-23 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1065
AccBSI CCGCTC 1 cut(s) 910
AccI GTMKAC 1 cut(s) 546
AciI CCGC 1 cut(s) 908
AclWI GGATC 2 cut(s) 771, 986
AcoI YGGCCR 1 cut(s) 920
AcsI RAATTY 5 cut(s) 47, 157, 301, 562, 793
AfaI GTAC 5 cut(s) 223, 245, 533, 656, 1060
AflII CTTAAG 1 cut(s) 554
AflIII ACRYGT 2 cut(s) 626, 637
AgsI TTSAA 5 cut(s) 74, 115, 163, 562, 1031
AjnI CCWGG 1 cut(s) 878
AluBI AGCT 2 cut(s) 930, 947
AluI AGCT 2 cut(s) 930, 947
Alw26I GTCTC 4 cut(s) 331, 412, 567, 811
AlwI GGATC 2 cut(s) 771, 986
AoxI GGCC 1 cut(s) 920
ApeKI GCWGC 2 cut(s) 581, 729
ApoI RAATTY 5 cut(s) 47, 157, 301, 562, 793
AspS9I GGNCC 2 cut(s) 274, 982
AsuHPI GGTGA 2 cut(s) 467, 682
AvaII GGWCC 2 cut(s) 274, 982
BalI TGGCCA 1 cut(s) 922
BbvI GCAGC 2 cut(s) 568, 741
BccI CCATC 6 cut(s) 177, 406, 486, 818, 931, 935
BcgI CGANNNNNNTGC 4 cut(s) 906, 940, 1036, 1070
BciT130I CCWGG 1 cut(s) 880
BciVI GTATCC 1 cut(s) 868
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 4 cut(s) 331, 412, 567, 811
BfaI CTAG 3 cut(s) 278, 609, 1076
BfmI CTRYAG 1 cut(s) 582
BfrI CTTAAG 1 cut(s) 554
BfuI GTATCC 1 cut(s) 868
BglII AGATCT 2 cut(s) 98, 280
BisI GCNGC 2 cut(s) 582, 730
BlsI GCNGC 2 cut(s) 583, 731
Bme1390I CCNGG 1 cut(s) 880
Bme18I GGWCC 2 cut(s) 274, 982
BmgT120I GGNCC 2 cut(s) 274, 982
BmrFI CCNGG 1 cut(s) 880
BmrI ACTGGG 1 cut(s) 216
BmsI GCATC 3 cut(s) 22, 166, 879
BmuI ACTGGG 1 cut(s) 216
BplI GAGNNNNNCTC 2 cut(s) 533, 565
BpmI CTGGAG 1 cut(s) 503
Bpu10I CCTNAGC 1 cut(s) 1011
BsaAI YACGTR 1 cut(s) 342
BsaBI GATNNNNATC 1 cut(s) 828
Bse1I ACTGG 4 cut(s) 92, 211, 662, 876
Bse3DI GCAATG 2 cut(s) 352, 1054
Bse8I GATNNNNATC 1 cut(s) 828
BseBI CCWGG 1 cut(s) 880
BseGI GGATG 2 cut(s) 37, 970
BseJI GATNNNNATC 1 cut(s) 828
BseMI GCAATG 2 cut(s) 352, 1054
BseMII CTCAG 2 cut(s) 98, 531
BseNI ACTGG 4 cut(s) 92, 211, 662, 876
BseXI GCAGC 2 cut(s) 568, 741
BshFI GGCC 1 cut(s) 922
BslFI GGGAC 1 cut(s) 882
BsmAI GTCTC 4 cut(s) 331, 412, 567, 811
BsmBI CGTCTC 1 cut(s) 567
BsmFI GGGAC 1 cut(s) 882
BsnI GGCC 1 cut(s) 922
Bsp1407I TGTACA 1 cut(s) 531
Bsp143I GATC 6 cut(s) 98, 144, 280, 330, 763, 991
BspACI CCGC 1 cut(s) 908
BspANI GGCC 1 cut(s) 922
BspCNI CTCAG 2 cut(s) 99, 532
BspMAI CTGCAG 1 cut(s) 586
BspPI GGATC 2 cut(s) 771, 986
BspTI CTTAAG 1 cut(s) 554
BsrBI CCGCTC 1 cut(s) 910
BsrDI GCAATG 2 cut(s) 352, 1054
BsrGI TGTACA 1 cut(s) 531
BsrI ACTGG 4 cut(s) 92, 211, 662, 876
BssMI GATC 6 cut(s) 98, 144, 280, 330, 763, 991
Bst2UI CCWGG 1 cut(s) 880
Bst4CI ACNGT 3 cut(s) 234, 243, 248
BstAFI CTTAAG 1 cut(s) 554
BstAUI TGTACA 1 cut(s) 531
BstBAI YACGTR 1 cut(s) 342
BstDEI CTNAG 3 cut(s) 107, 540, 1011
BstF5I GGATG 2 cut(s) 37, 970
BstKTI GATC 6 cut(s) 101, 147, 283, 333, 766, 994
BstMAI GTCTC 4 cut(s) 331, 412, 567, 811
BstMBI GATC 6 cut(s) 98, 144, 280, 330, 763, 991
BstMWI GCNNNNNNNGC 1 cut(s) 953
BstNI CCWGG 1 cut(s) 880
BstNSI RCATGY 2 cut(s) 630, 641
BstSCI CCNGG 1 cut(s) 878
BstSFI CTRYAG 1 cut(s) 582
BstV1I GCAGC 2 cut(s) 568, 741
BstX2I RGATCY 2 cut(s) 98, 280
BstYI RGATCY 2 cut(s) 98, 280
BsuI GTATCC 1 cut(s) 868
BsuRI GGCC 1 cut(s) 922
BtsCI GGATG 2 cut(s) 37, 970
BtsIMutI CAGTG 3 cut(s) 99, 230, 239
Cfr13I GGNCC 2 cut(s) 274, 982
Csp6I GTAC 5 cut(s) 222, 244, 532, 655, 1059
CviAII CATG 5 cut(s) 567, 627, 638, 839, 918
CviJI RGCY 7 cut(s) 211, 382, 922, 930, 947, 961, 1010
CviKI_1 RGCY 7 cut(s) 211, 382, 922, 930, 947, 961, 1010
CviQI GTAC 5 cut(s) 222, 244, 532, 655, 1059
DdeI CTNAG 3 cut(s) 107, 540, 1011
DpnI GATC 6 cut(s) 100, 146, 282, 332, 765, 993
DpnII GATC 6 cut(s) 98, 144, 280, 330, 763, 991
EaeI YGGCCR 1 cut(s) 920
Eco32I GATATC 1 cut(s) 856
Eco47I GGWCC 2 cut(s) 274, 982
EcoRI GAATTC 3 cut(s) 47, 562, 793
EcoRII CCWGG 1 cut(s) 878
EcoRV GATATC 1 cut(s) 856
EcoT22I ATGCAT 1 cut(s) 919
Esp3I CGTCTC 1 cut(s) 567
FaeI CATG 5 cut(s) 570, 630, 641, 842, 921
FaqI GGGAC 1 cut(s) 882
FatI CATG 5 cut(s) 566, 626, 637, 838, 917
FauNDI CATATG 1 cut(s) 270
FbaI TGATCA 1 cut(s) 144
FblI GTMKAC 1 cut(s) 546
Fnu4HI GCNGC 2 cut(s) 582, 730
FokI GGATG 2 cut(s) 44, 977
Fsp4HI GCNGC 2 cut(s) 582, 730
FspBI CTAG 3 cut(s) 278, 609, 1076
GluI GCNGC 2 cut(s) 582, 730
GsuI CTGGAG 1 cut(s) 503
HaeIII GGCC 1 cut(s) 922
Hin1II CATG 5 cut(s) 570, 630, 641, 842, 921
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 8 cut(s) 111, 394, 516, 605, 677, 770, 829, 1072
HphI GGTGA 2 cut(s) 467, 682
Hpy166II GTNNAC 4 cut(s) 6, 534, 547, 655
Hpy188I TCNGA 4 cut(s) 187, 407, 483, 758
Hpy188III TCNNGA 8 cut(s) 173, 202, 328, 415, 520, 609, 743, 767
Hpy8I GTNNAC 4 cut(s) 6, 534, 547, 655
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 3 cut(s) 655, 667, 1025
HpyCH4III ACNGT 3 cut(s) 234, 243, 248
HpyCH4IV ACGT 2 cut(s) 341, 576
HpyF10VI GCNNNNNNNGC 1 cut(s) 953
HpyF3I CTNAG 3 cut(s) 107, 540, 1011
HpySE526I ACGT 2 cut(s) 341, 576
Hsp92II CATG 5 cut(s) 570, 630, 641, 842, 921
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 6 cut(s) 98, 144, 280, 330, 763, 991
LmnI GCTCC 2 cut(s) 13, 944
Lsp1109I GCAGC 2 cut(s) 568, 741
LweI GCATC 3 cut(s) 22, 166, 879
MaeI CTAG 3 cut(s) 278, 609, 1076
MaeII ACGT 2 cut(s) 341, 576
MaeIII GTNAC 4 cut(s) 199, 228, 351, 434
MalI GATC 6 cut(s) 100, 146, 282, 332, 765, 993
MbiI CCGCTC 1 cut(s) 910
MboI GATC 6 cut(s) 98, 144, 280, 330, 763, 991
MboII GAAGA 1 cut(s) 174
MfeI CAATTG 1 cut(s) 38
MflI RGATCY 2 cut(s) 98, 280
MlsI TGGCCA 1 cut(s) 922
MluCI AATT 9 cut(s) 38, 47, 63, 157, 301, 507, 562, 793, 1017
MluNI TGGCCA 1 cut(s) 922
MlyI GAGTC 4 cut(s) 510, 599, 671, 1081
MmeI TCCRAC 2 cut(s) 24, 736
MnlI CCTC 3 cut(s) 535, 712, 1000
Mox20I TGGCCA 1 cut(s) 922
Mph1103I ATGCAT 1 cut(s) 919
MscI TGGCCA 1 cut(s) 922
MseI TTAA 1 cut(s) 555
MslI CAYNNNNRTG 3 cut(s) 174, 642, 837
Msp20I TGGCCA 1 cut(s) 922
MspCI CTTAAG 1 cut(s) 554
MspR9I CCNGG 1 cut(s) 880
MunI CAATTG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 880
MwoI GCNNNNNNNGC 1 cut(s) 953
NdeI CATATG 1 cut(s) 270
NdeII GATC 6 cut(s) 98, 144, 280, 330, 763, 991
NlaIII CATG 5 cut(s) 570, 630, 641, 842, 921
NmuCI GTSAC 2 cut(s) 199, 228
NsiI ATGCAT 1 cut(s) 919
NspI RCATGY 2 cut(s) 630, 641
PciI ACATGT 2 cut(s) 626, 637
PfeI GAWTC 4 cut(s) 111, 394, 770, 829
PkrI GCNGC 2 cut(s) 583, 731
PleI GAGTC 4 cut(s) 510, 599, 671, 1080
PpsI GAGTC 4 cut(s) 510, 599, 671, 1080
Ppu21I YACGTR 1 cut(s) 342
PscI ACATGT 2 cut(s) 626, 637
PsiI TTATAA 1 cut(s) 1065
Psp6I CCWGG 1 cut(s) 878
PspGI CCWGG 1 cut(s) 878
PspPI GGNCC 2 cut(s) 274, 982
PstI CTGCAG 1 cut(s) 586
PsuI RGATCY 2 cut(s) 98, 280
RsaI GTAC 5 cut(s) 223, 245, 533, 656, 1060
RsaNI GTAC 5 cut(s) 222, 244, 532, 655, 1059
RseI CAYNNNNRTG 3 cut(s) 174, 642, 837
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 2 cut(s) 582, 730
Sau3AI GATC 6 cut(s) 98, 144, 280, 330, 763, 991
Sau96I GGNCC 2 cut(s) 274, 982
SchI GAGTC 4 cut(s) 510, 599, 671, 1081
ScrFI CCNGG 1 cut(s) 880
SfaNI GCATC 3 cut(s) 22, 166, 879
SfcI CTRYAG 1 cut(s) 582
SinI GGWCC 2 cut(s) 274, 982
SmiMI CAYNNNNRTG 3 cut(s) 174, 642, 837
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse9I AATT 9 cut(s) 38, 47, 63, 157, 301, 507, 562, 793, 1017
SsiI CCGC 1 cut(s) 908
SspI AATATT 1 cut(s) 1043
SspMI CTAG 3 cut(s) 278, 609, 1076
StyD4I CCNGG 1 cut(s) 878
TaaI ACNGT 3 cut(s) 234, 243, 248
TaiI ACGT 2 cut(s) 344, 579
TaqI TCGA 5 cut(s) 329, 514, 603, 766, 926
TasI AATT 9 cut(s) 38, 47, 63, 157, 301, 507, 562, 793, 1017
TatI WGTACW 4 cut(s) 221, 243, 531, 654
TfiI GAWTC 4 cut(s) 111, 394, 770, 829
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TscAI CASTG 3 cut(s) 99, 237, 246
TseFI GTSAC 2 cut(s) 199, 228
TseI GCWGC 2 cut(s) 581, 729
Tsp45I GTSAC 2 cut(s) 199, 228
TspDTI ATGAA 4 cut(s) 40, 314, 555, 981
TspGWI ACGGA 1 cut(s) 770
TspRI CASTG 3 cut(s) 99, 237, 246
Vha464I CTTAAG 1 cut(s) 554
VpaK11BI GGWCC 2 cut(s) 274, 982
XapI RAATTY 5 cut(s) 47, 157, 301, 562, 793
XbaI TCTAGA 1 cut(s) 608
XceI RCATGY 2 cut(s) 630, 641
XmiI GTMKAC 1 cut(s) 546
XspI CTAG 3 cut(s) 278, 609, 1076
Zsp2I ATGCAT 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.