Rh1BG045100

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000234
Physical Location & Seq
Forward (+)
5970576 .. 5971634
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG045100.1

Sequence Viewer

Length: 1059 bp
ATGAAGGACTCGCATACGAAAAATTTCATATGTGAAGATATCTTGATTAACATTTTTGCAAGACTGCCTGCCAAATCCCTCGTACGGTTTATGTGTGTATGCAAGTCATGGAGTAATTTGATTGGCAGCTCAAGCTTTATTTCCACACATCTCAACAGGAACATCAAAAATCATGATCATCTCTATCTAATTTCTCACCACTATTATAGAGGCGCCCGCGACCGCTCACTCATATCACTTTTTTCTAATGAAACATTTGAGCAGTGCTTGGAGTTACAACATCCCTCGTGGACCAAAGAACGCTTTAGAGTATATGGTTCAAGCAATGGTTTAGTTTGTATCTCTGATAAAAGATTGAGTTCAACGAGTTCTATATGCATATGGAACCCATCTATTAGAAAATCCATATCTCTTCCCAAGACCTACATCCCAGATCATAGCTGCTTAGTTTCAGAAATCTATCTGTCATTCTGTTTTCACCCAACTCATAATGATTACAAGGTGGTAAAGATGTTGCATGAATGGAATAAGCTTTCCATGGAAGTTGAGGTGTATAGTCTTAGCAACAACTCCTGGAAGGTGATTGAAATTACTCCTTGGTTAAATTCTAGTTGGTATCTCACAGGTTATGAGGTTTGCAATGGAATAGTATATTGGCTGATTTCTGGAGGTCATTATAGGATTGTGTCCTTTGATACAGGGAGCGAAAAATTTGGTGAGTTAGTGGTTCCAGAACACATATTGCCGGTTAAGGGTGCTGTCAAGATTGAAGTGTACAAGGAAACCATATGCCTGCTTCAAGGTCAAACAGATGTTGATTTATGGGTTCTGCAAGAAGGGTCTTTTCAAAGGCTGCGTACTATTTTACTGCCTCGAGCAAATATTTTCATACTAATTGGCTTATTTACAGATAATGGACTCTTGGTACAAGAACAATCAAGATTCACTGAGTTAGATTTGTTTGATCTTGAATCCAACCAGCTTAAAAGTACCGGAATCCTTATGTGCCAACGTAAGCTCCATACTTACATAGAAAGTCTAGTTCTACTCGATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

352

Amino Acids

40.77

Weight (kDa)

7.22

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 11 - 46 2.9e-10 F-box domain
F-box-like PF12937 13 - 43 2.3e-07 F-box-like
FBA_3 PF08268 80 - 280 2.2e-22 F-box associated beta propeller domain
Beta-prop_KIB1-4 PF03478 88 - 240 8.8e-09 KIB1-4 beta-propeller
FBA_1 PF07734 99 - 276 1.8e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AccBSI CCGCTC 1 cut(s) 225
AccII CGCG 1 cut(s) 219
AciI CCGC 2 cut(s) 217, 223
AcsI RAATTY 3 cut(s) 22, 604, 710
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 5 cut(s) 84, 776, 859, 927, 991
AfiI CCNNNNNNNGG 2 cut(s) 84, 752
AgsI TTSAA 7 cut(s) 321, 363, 587, 770, 800, 848, 971
AjnI CCWGG 1 cut(s) 572
AjuI GAANNNNNNNTTGG 2 cut(s) 637, 669
AluBI AGCT 6 cut(s) 129, 135, 441, 532, 982, 1018
AluI AGCT 6 cut(s) 129, 135, 441, 532, 982, 1018
Ama87I CYCGRG 1 cut(s) 873
ApeKI GCWGC 3 cut(s) 126, 441, 853
ApoI RAATTY 3 cut(s) 22, 604, 710
Asp700I GAANNNNTTC 1 cut(s) 23
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 291
AsuHPI GGTGA 4 cut(s) 188, 470, 592, 728
AvaI CYCGRG 1 cut(s) 873
AvaII GGWCC 1 cut(s) 291
BanI GGYRCC 1 cut(s) 212
BauI CACGAG 1 cut(s) 286
BbvI GCAGC 3 cut(s) 138, 428, 840
BccI CCATC 1 cut(s) 397
BciT130I CCWGG 1 cut(s) 574
BclI TGATCA 1 cut(s) 175
BfaI CTAG 2 cut(s) 609, 1040
BfoI RGCGCY 1 cut(s) 216
BisI GCNGC 3 cut(s) 127, 442, 854
BlsI GCNGC 3 cut(s) 128, 443, 855
Bme1390I CCNGG 1 cut(s) 574
Bme18I GGWCC 1 cut(s) 291
BmeT110I CYCGRG 1 cut(s) 873
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 3 cut(s) 214, 386, 729
BmrFI CCNGG 1 cut(s) 574
BpmI CTGGAG 1 cut(s) 687
BpuEI CTTGAG 1 cut(s) 115
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 537, 596
BsaWI WCCGGW 1 cut(s) 992
BsaXI ACNNNNNCTCC 2 cut(s) 1002, 1032
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 752
Bse118I RCCGGY 1 cut(s) 745
Bse3DI GCAATG 2 cut(s) 331, 646
BseBI CCWGG 1 cut(s) 574
BseDI CCNNGG 2 cut(s) 537, 596
BseGI GGATG 2 cut(s) 280, 426
BseLI CCNNNNNNNGG 2 cut(s) 84, 752
BseMI GCAATG 2 cut(s) 331, 646
BseMII CTCAG 1 cut(s) 939
BseXI GCAGC 3 cut(s) 138, 428, 840
Bsh1236I CGCG 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 223
BshNI GGYRCC 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 873
BsiSI CCGG 2 cut(s) 746, 993
BsiWI CGTACG 1 cut(s) 82
BslI CCNNNNNNNGG 2 cut(s) 84, 752
BsoBI CYCGRG 1 cut(s) 873
Bsp1407I TGTACA 1 cut(s) 774
Bsp143I GATC 4 cut(s) 175, 433, 964, 1051
Bsp19I CCATGG 1 cut(s) 537
BspACI CCGC 2 cut(s) 217, 223
BspCNI CTCAG 1 cut(s) 940
BspFNI CGCG 1 cut(s) 219
BspHI TCATGA 1 cut(s) 172
BspLI GGNNCC 3 cut(s) 214, 386, 729
BspT107I GGYRCC 1 cut(s) 212
BsrBI CCGCTC 1 cut(s) 225
BsrDI GCAATG 2 cut(s) 331, 646
BsrFI RCCGGY 1 cut(s) 745
BsrGI TGTACA 1 cut(s) 774
BssAI RCCGGY 1 cut(s) 745
BssECI CCNNGG 2 cut(s) 537, 596
BssMI GATC 4 cut(s) 175, 433, 964, 1051
BssNI GRCGYC 1 cut(s) 213
BssSI CACGAG 1 cut(s) 286
BssT1I CCWWGG 2 cut(s) 537, 596
Bst2BI CACGAG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 574
Bst4CI ACNGT 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 417
BstACI GRCGYC 1 cut(s) 213
BstAUI TGTACA 1 cut(s) 774
BstC8I GCNNGC 3 cut(s) 69, 217, 794
BstDEI CTNAG 3 cut(s) 445, 560, 948
BstDSI CCRYGG 1 cut(s) 537
BstF5I GGATG 2 cut(s) 280, 426
BstFNI CGCG 1 cut(s) 219
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 4 cut(s) 178, 436, 967, 1054
BstMBI GATC 4 cut(s) 175, 433, 964, 1051
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 1 cut(s) 574
BstSCI CCNGG 1 cut(s) 572
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 3 cut(s) 138, 428, 840
BtgI CCRYGG 1 cut(s) 537
BtsCI GGATG 2 cut(s) 280, 426
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 2 cut(s) 269, 945
Cac8I GCNNGC 3 cut(s) 69, 217, 794
CciI TCATGA 1 cut(s) 172
CfoI GCGC 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 745
Cfr13I GGNCC 1 cut(s) 291
Csp6I GTAC 5 cut(s) 83, 775, 858, 926, 990
CviAII CATG 4 cut(s) 108, 173, 518, 538
CviJI RGCY 9 cut(s) 129, 135, 441, 532, 658, 853, 900, 982, 1018
CviKI_1 RGCY 9 cut(s) 129, 135, 441, 532, 658, 853, 900, 982, 1018
CviQI GTAC 5 cut(s) 83, 775, 858, 926, 990
DdeI CTNAG 3 cut(s) 445, 560, 948
DinI GGCGCC 1 cut(s) 214
DpnI GATC 4 cut(s) 177, 435, 966, 1053
DpnII GATC 4 cut(s) 175, 433, 964, 1051
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Eco130I CCWWGG 2 cut(s) 537, 596
Eco32I GATATC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 873
EcoRII CCWGG 1 cut(s) 572
EcoRV GATATC 1 cut(s) 40
EcoT14I CCWWGG 2 cut(s) 537, 596
EcoT22I ATGCAT 1 cut(s) 380
EgeI GGCGCC 1 cut(s) 214
EheI GGCGCC 1 cut(s) 214
ErhI CCWWGG 2 cut(s) 537, 596
FaeI CATG 4 cut(s) 111, 176, 521, 541
FatI CATG 4 cut(s) 107, 172, 517, 537
FauI CCCGC 1 cut(s) 224
FauNDI CATATG 3 cut(s) 29, 380, 788
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 3 cut(s) 127, 442, 854
FokI GGATG 2 cut(s) 267, 413
Fsp4HI GCNGC 3 cut(s) 127, 442, 854
FspBI CTAG 2 cut(s) 609, 1040
GlaI GCGC 1 cut(s) 214
GluI GCNGC 3 cut(s) 127, 442, 854
GsuI CTGGAG 1 cut(s) 687
HaeII RGCGCY 1 cut(s) 216
HapII CCGG 2 cut(s) 746, 993
HhaI GCGC 1 cut(s) 215
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 4 cut(s) 111, 176, 521, 541
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HindIII AAGCTT 2 cut(s) 133, 530
HinfI GANTC 5 cut(s) 8, 918, 942, 971, 996
HpaII CCGG 2 cut(s) 746, 993
HphI GGTGA 4 cut(s) 188, 470, 592, 728
Hpy166II GTNNAC 2 cut(s) 291, 775
Hpy188I TCNGA 2 cut(s) 346, 454
Hpy188III TCNNGA 7 cut(s) 43, 173, 666, 731, 763, 939, 968
Hpy8I GTNNAC 2 cut(s) 291, 775
HpyAV CCTTC 2 cut(s) 571, 830
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4IV ACGT 1 cut(s) 1012
HpyCH4V TGCA 6 cut(s) 59, 102, 378, 517, 639, 832
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 3 cut(s) 445, 560, 948
HpySE526I ACGT 1 cut(s) 1012
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 4 cut(s) 111, 176, 521, 541
HspAI GCGC 1 cut(s) 213
KasI GGCGCC 1 cut(s) 212
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 4 cut(s) 175, 433, 964, 1051
LmnI GCTCC 2 cut(s) 702, 1023
Lsp1109I GCAGC 3 cut(s) 138, 428, 840
MaeI CTAG 2 cut(s) 609, 1040
MaeII ACGT 1 cut(s) 1012
MaeIII GTNAC 1 cut(s) 273
MalI GATC 4 cut(s) 177, 435, 966, 1053
MbiI CCGCTC 1 cut(s) 225
MboI GATC 4 cut(s) 175, 433, 964, 1051
MboII GAAGA 2 cut(s) 47, 404
MluCI AATT 7 cut(s) 22, 115, 189, 588, 604, 710, 894
Mly113I GGCGCC 1 cut(s) 213
MlyI GAGTC 2 cut(s) 2, 912
MmeI TCCRAC 1 cut(s) 999
MnlI CCTC 7 cut(s) 89, 203, 295, 541, 625, 662, 882
Mph1103I ATGCAT 1 cut(s) 380
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 4 cut(s) 48, 602, 750, 984
MspI CCGG 2 cut(s) 746, 993
MspR9I CCNGG 1 cut(s) 574
MvaI CCWGG 1 cut(s) 574
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 132
NarI GGCGCC 1 cut(s) 213
NcoI CCATGG 1 cut(s) 537
NdeI CATATG 3 cut(s) 29, 380, 788
NdeII GATC 4 cut(s) 175, 433, 964, 1051
NlaIII CATG 4 cut(s) 111, 176, 521, 541
NlaIV GGNNCC 3 cut(s) 214, 386, 729
NsiI ATGCAT 1 cut(s) 380
PaeR7I CTCGAG 1 cut(s) 873
PagI TCATGA 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 3 cut(s) 942, 971, 996
Pfl23II CGTACG 1 cut(s) 82
PfoI TCCNGGA 1 cut(s) 572
PkrI GCNGC 3 cut(s) 128, 443, 855
PleI GAGTC 2 cut(s) 2, 912
PluTI GGCGCC 1 cut(s) 216
PpsI GAGTC 2 cut(s) 2, 912
Psp6I CCWGG 1 cut(s) 572
PspGI CCWGG 1 cut(s) 572
PspLI CGTACG 1 cut(s) 82
PspN4I GGNNCC 3 cut(s) 214, 386, 729
PspPI GGNCC 1 cut(s) 291
PspXI VCTCGAGB 1 cut(s) 873
RsaI GTAC 5 cut(s) 84, 776, 859, 927, 991
RsaNI GTAC 5 cut(s) 83, 775, 858, 926, 990
SaqAI TTAA 4 cut(s) 48, 602, 750, 984
SatI GCNGC 3 cut(s) 127, 442, 854
Sau3AI GATC 4 cut(s) 175, 433, 964, 1051
Sau96I GGNCC 1 cut(s) 291
SchI GAGTC 2 cut(s) 2, 912
ScrFI CCNGG 1 cut(s) 574
SfoI GGCGCC 1 cut(s) 214
Sfr274I CTCGAG 1 cut(s) 873
SinI GGWCC 1 cut(s) 291
SlaI CTCGAG 1 cut(s) 873
SmlI CTYRAG 2 cut(s) 130, 873
SmoI CTYRAG 2 cut(s) 130, 873
Sse9I AATT 7 cut(s) 22, 115, 189, 588, 604, 710, 894
SsiI CCGC 2 cut(s) 217, 223
SspDI GGCGCC 1 cut(s) 212
SspI AATATT 1 cut(s) 883
SspMI CTAG 2 cut(s) 609, 1040
StyD4I CCNGG 1 cut(s) 572
StyI CCWWGG 2 cut(s) 537, 596
TaaI ACNGT 1 cut(s) 87
TaiI ACGT 1 cut(s) 1015
TaqI TCGA 2 cut(s) 874, 1050
TasI AATT 7 cut(s) 22, 115, 189, 588, 604, 710, 894
TatI WGTACW 1 cut(s) 774
TfiI GAWTC 3 cut(s) 942, 971, 996
Tru1I TTAA 4 cut(s) 48, 602, 750, 984
Tru9I TTAA 4 cut(s) 48, 602, 750, 984
TscAI CASTG 2 cut(s) 269, 952
TseI GCWGC 3 cut(s) 126, 441, 853
TspDTI ATGAA 5 cut(s) 16, 17, 264, 534, 877
TspRI CASTG 2 cut(s) 269, 952
VpaK11BI GGWCC 1 cut(s) 291
XapI RAATTY 3 cut(s) 22, 604, 710
XhoI CTCGAG 1 cut(s) 873
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 2 cut(s) 609, 1040
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.