Rh1AG045800

F-box protein CPR30-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000234
Physical Location & Seq
Forward (+)
7796308 .. 7821380
25073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG045800.1

Sequence Viewer

Length: 528 bp
ATGGAAGTTGAGGTGTATAGTCTTAGCAACAACTCCTGGAAGGTGATTGAAATTACTCCTTGGTTAAATTCTAGATGGTGGTTTCTCACAGGTTATGAGGTTTGCAATGGAATAGTATATTGGCTGATTTCTGGAGGTCATTATAGGATTGTGTCCTTTGATACAGGGAGGGAAAAATTTGGTGAGTTAGTGGTTCCAGAACCCATATTGCCGGTTAAGGGGGCTGTCAAGATTGAAGTGTACAAGGAAACCATATGCCTGCTTCAAGGTGAAACAGATGTTGATTTATGGGTTCTGCAAGAAGGGTCTTTTCAAAGGCTGCGTACTATTTTACTGCCTCGAGCAAATATTTTCATACTAATTGGCTTATTTACAGATAATGGACTCTTGGTACAAGAACAATCAAGATCCACTGATGAGCTAGATTTGTTTGATCTTGAATCCAACCAGCTTAAAAGTACCGGAATCCTTTTGTGCCAACGATCTCACGATCTTGATGGTCATGGCTACTACTCATCTGATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

175

Amino Acids

20.05

Weight (kDa)

4.68

Isoelectric Point (pI)

45.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 2 - 98 6e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 402
AcsI RAATTY 2 cut(s) 67, 176
AfaI GTAC 4 cut(s) 242, 325, 393, 460
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 5 cut(s) 50, 236, 266, 314, 440
AjnI CCWGG 1 cut(s) 35
AjuI GAANNNNNNNTTGG 2 cut(s) 103, 135
AluBI AGCT 3 cut(s) 421, 451, 525
AluI AGCT 3 cut(s) 421, 451, 525
AlwI GGATC 1 cut(s) 402
Ama87I CYCGRG 1 cut(s) 339
ApeKI GCWGC 1 cut(s) 319
ApoI RAATTY 2 cut(s) 67, 176
AsuHPI GGTGA 3 cut(s) 55, 194, 281
AvaI CYCGRG 1 cut(s) 339
BbvI GCAGC 1 cut(s) 306
BccI CCATC 2 cut(s) 69, 491
BciT130I CCWGG 1 cut(s) 37
BfaI CTAG 2 cut(s) 72, 422
BisI GCNGC 1 cut(s) 320
BlsI GCNGC 1 cut(s) 321
Bme1390I CCNGG 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 339
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 59
BsaWI WCCGGW 1 cut(s) 461
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse118I RCCGGY 1 cut(s) 211
Bse3DI GCAATG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMI GCAATG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 339
BsiSI CCGG 2 cut(s) 212, 462
BslI CCNNNNNNNGG 1 cut(s) 218
BsoBI CYCGRG 1 cut(s) 339
Bsp1407I TGTACA 1 cut(s) 240
Bsp143I GATC 4 cut(s) 407, 433, 482, 490
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 1 cut(s) 402
BsrDI GCAATG 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 211
BsrGI TGTACA 1 cut(s) 240
BssAI RCCGGY 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 4 cut(s) 407, 433, 482, 490
BssT1I CCWWGG 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 37
BstAUI TGTACA 1 cut(s) 240
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 23
BstKTI GATC 4 cut(s) 410, 436, 485, 493
BstMBI GATC 4 cut(s) 407, 433, 482, 490
BstNI CCWGG 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 407
BstYI RGATCY 1 cut(s) 407
BtsIMutI CAGTG 1 cut(s) 411
Cac8I GCNNGC 1 cut(s) 260
Cfr10I RCCGGY 1 cut(s) 211
Csp6I GTAC 4 cut(s) 241, 324, 392, 459
CviAII CATG 1 cut(s) 503
CviJI RGCY 8 cut(s) 124, 224, 319, 366, 421, 451, 507, 525
CviKI_1 RGCY 8 cut(s) 124, 224, 319, 366, 421, 451, 507, 525
CviQI GTAC 4 cut(s) 241, 324, 392, 459
DdeI CTNAG 1 cut(s) 23
DpnI GATC 4 cut(s) 409, 435, 484, 492
DpnII GATC 4 cut(s) 407, 433, 482, 490
Eco130I CCWWGG 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 59
FaeI CATG 1 cut(s) 506
FatI CATG 1 cut(s) 502
FauNDI CATATG 1 cut(s) 254
Fnu4HI GCNGC 1 cut(s) 320
Fsp4HI GCNGC 1 cut(s) 320
FspBI CTAG 2 cut(s) 72, 422
GluI GCNGC 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 153
HapII CCGG 2 cut(s) 212, 462
Hin1II CATG 1 cut(s) 506
HinfI GANTC 3 cut(s) 384, 440, 465
HpaII CCGG 2 cut(s) 212, 462
HphI GGTGA 3 cut(s) 55, 194, 281
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 520
Hpy188III TCNNGA 8 cut(s) 72, 132, 197, 229, 405, 437, 488, 494
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 2 cut(s) 34, 296
HpyCH4V TGCA 2 cut(s) 105, 298
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 1 cut(s) 506
Kzo9I GATC 4 cut(s) 407, 433, 482, 490
Lsp1109I GCAGC 1 cut(s) 306
MaeI CTAG 2 cut(s) 72, 422
MalI GATC 4 cut(s) 409, 435, 484, 492
MboI GATC 4 cut(s) 407, 433, 482, 490
MflI RGATCY 1 cut(s) 407
MluCI AATT 4 cut(s) 51, 67, 176, 360
MlyI GAGTC 1 cut(s) 378
MmeI TCCRAC 1 cut(s) 468
MnlI CCTC 5 cut(s) 4, 91, 128, 162, 348
MseI TTAA 3 cut(s) 65, 216, 453
MspI CCGG 2 cut(s) 212, 462
MspR9I CCNGG 1 cut(s) 37
MvaI CCWGG 1 cut(s) 37
NdeI CATATG 1 cut(s) 254
NdeII GATC 4 cut(s) 407, 433, 482, 490
NlaIII CATG 1 cut(s) 506
NlaIV GGNNCC 1 cut(s) 195
PaeR7I CTCGAG 1 cut(s) 339
PfeI GAWTC 2 cut(s) 440, 465
PfoI TCCNGGA 1 cut(s) 35
PkrI GCNGC 1 cut(s) 321
PleI GAGTC 1 cut(s) 378
PpsI GAGTC 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 35
PspGI CCWGG 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 195
PspXI VCTCGAGB 1 cut(s) 339
PsuI RGATCY 1 cut(s) 407
RsaI GTAC 4 cut(s) 242, 325, 393, 460
RsaNI GTAC 4 cut(s) 241, 324, 392, 459
SaqAI TTAA 3 cut(s) 65, 216, 453
SatI GCNGC 1 cut(s) 320
Sau3AI GATC 4 cut(s) 407, 433, 482, 490
SchI GAGTC 1 cut(s) 378
ScrFI CCNGG 1 cut(s) 37
SetI ASST 9 cut(s) 15, 45, 94, 102, 139, 271, 423, 453, 527
Sfr274I CTCGAG 1 cut(s) 339
SlaI CTCGAG 1 cut(s) 339
SmlI CTYRAG 1 cut(s) 339
SmoI CTYRAG 1 cut(s) 339
Sse9I AATT 4 cut(s) 51, 67, 176, 360
SspI AATATT 1 cut(s) 349
SspMI CTAG 2 cut(s) 72, 422
StyD4I CCNGG 1 cut(s) 35
StyI CCWWGG 1 cut(s) 59
TaqI TCGA 1 cut(s) 340
TasI AATT 4 cut(s) 51, 67, 176, 360
TatI WGTACW 1 cut(s) 240
TfiI GAWTC 2 cut(s) 440, 465
Tru1I TTAA 3 cut(s) 65, 216, 453
Tru9I TTAA 3 cut(s) 65, 216, 453
TscAI CASTG 1 cut(s) 418
TseI GCWGC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 343
TspRI CASTG 1 cut(s) 418
XapI RAATTY 2 cut(s) 67, 176
XbaI TCTAGA 1 cut(s) 71
XhoI CTCGAG 1 cut(s) 339
XspI CTAG 2 cut(s) 72, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.