Rh6CG458400

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000234
Physical Location & Seq
Forward (+)
63354444 .. 63354932
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG458400.1

Sequence Viewer

Length: 489 bp
ATGCTTATTTTCGCCCCAAATGTGAACGGAGTTGTGTATTGGATTCTATCTGAGGACCTCTTGTCCATCATTTCTTTTGATGTGCACAACGAGTCATTTCGAACCAGGAGCTATAGTAGGGACTTGTTCCCACTTATGCATCCAAACTGTATGCAAGTGTGGAACAATTCACTTTGTTTGTTTCGGCCCAAAGTCACTGAATATGATGGGAAGAATACAAGCTGCTGTGAGATATACATTCTGAACATGGTAACAAGTAAATTGGAACTATCCAGGACTCTTTGTATGGAAAGTTTTGTATCTATAGCATGGCCATTGGGGTTCAACACAAGTGGCAGTGGGCAAGACATTGATATGGTTATCAGGACTGATAGTCGAACACCAATACTTGTTTCAGGTACTCCTCAAGGGCACGAAATTGAACTAGGTATGTTCGAAGACTGCTGGTACGTTGATGTTTATAGAGAGAGTCTGCTTCTACTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

162

Amino Acids

18.61

Weight (kDa)

4.67

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 311
AfaI GTAC 2 cut(s) 400, 449
AgsI TTSAA 2 cut(s) 325, 422
AhdI GACNNNNNGTC 2 cut(s) 61, 372
AjnI CCWGG 2 cut(s) 104, 272
AjuI GAANNNNNNNTTGG 2 cut(s) 376, 408
AluBI AGCT 2 cut(s) 111, 222
AluI AGCT 2 cut(s) 111, 222
Alw21I GWGCWC 1 cut(s) 87
Alw44I GTGCAC 1 cut(s) 83
AoxI GGCC 2 cut(s) 185, 311
ApaLI GTGCAC 1 cut(s) 83
ApeKI GCWGC 1 cut(s) 222
AspS9I GGNCC 2 cut(s) 55, 186
AsuII TTCGAA 2 cut(s) 100, 435
AvaII GGWCC 1 cut(s) 55
BaeGI GKGCMC 2 cut(s) 87, 414
BalI TGGCCA 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 209
BccI CCATC 2 cut(s) 74, 200
BciT130I CCWGG 2 cut(s) 106, 274
BfaI CTAG 1 cut(s) 425
BfmI CTRYAG 2 cut(s) 112, 303
BisI GCNGC 1 cut(s) 223
BlsI GCNGC 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 106, 274
Bme18I GGWCC 1 cut(s) 55
BmeRI GACNNNNNGTC 2 cut(s) 61, 372
BmgT120I GGNCC 2 cut(s) 55, 186
BmrFI CCNGG 2 cut(s) 106, 274
BmsI GCATC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 444
Bpu14I TTCGAA 2 cut(s) 100, 435
BpuEI CTTGAG 1 cut(s) 390
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
BseBI CCWGG 2 cut(s) 106, 274
BseGI GGATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 393
BseSI GKGCMC 2 cut(s) 87, 414
BseXI GCAGC 1 cut(s) 209
BshFI GGCC 2 cut(s) 187, 313
BsiHKAI GWGCWC 1 cut(s) 87
BslFI GGGAC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 2 cut(s) 187, 313
Bsp119I TTCGAA 2 cut(s) 100, 435
Bsp1286I GDGCHC 2 cut(s) 87, 414
BspANI GGCC 2 cut(s) 187, 313
BspCNI CTCAG 1 cut(s) 43
BspT104I TTCGAA 2 cut(s) 100, 435
Bst2UI CCWGG 2 cut(s) 106, 274
Bst4CI ACNGT 1 cut(s) 149
BstBI TTCGAA 2 cut(s) 100, 435
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 139
BstNI CCWGG 2 cut(s) 106, 274
BstSCI CCNGG 2 cut(s) 104, 272
BstSFI CTRYAG 2 cut(s) 112, 303
BstSLI GKGCMC 2 cut(s) 87, 414
BstV1I GCAGC 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 444
BsuRI GGCC 2 cut(s) 187, 313
BtsCI GGATG 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 2 cut(s) 195, 343
Cfr13I GGNCC 2 cut(s) 55, 186
Csp6I GTAC 2 cut(s) 399, 448
CspCI CAANNNNNGTGG 2 cut(s) 313, 348
CviAII CATG 2 cut(s) 247, 309
CviJI RGCY 4 cut(s) 111, 187, 222, 313
CviKI_1 RGCY 4 cut(s) 111, 187, 222, 313
CviQI GTAC 2 cut(s) 399, 448
DdeI CTNAG 1 cut(s) 51
DriI GACNNNNNGTC 2 cut(s) 61, 372
EaeI YGGCCR 1 cut(s) 311
Eam1105I GACNNNNNGTC 2 cut(s) 61, 372
Eco47I GGWCC 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 104, 272
EcoT22I ATGCAT 1 cut(s) 141
FaeI CATG 2 cut(s) 250, 312
FaqI GGGAC 1 cut(s) 134
FatI CATG 2 cut(s) 246, 308
Fnu4HI GCNGC 1 cut(s) 223
FokI GGATG 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 223
FspBI CTAG 1 cut(s) 425
GluI GCNGC 1 cut(s) 223
HaeIII GGCC 2 cut(s) 187, 313
Hin1II CATG 2 cut(s) 250, 312
HinfI GANTC 4 cut(s) 43, 92, 277, 469
Hpy166II GTNNAC 2 cut(s) 25, 85
Hpy188I TCNGA 2 cut(s) 52, 243
Hpy188III TCNNGA 1 cut(s) 364
Hpy8I GTNNAC 2 cut(s) 25, 85
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 3 cut(s) 85, 139, 154
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 1 cut(s) 450
Hsp92II CATG 2 cut(s) 250, 312
LmnI GCTCC 1 cut(s) 108
LpnPI CCDG 7 cut(s) 91, 118, 259, 286, 349, 381, 430
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 425
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 2 cut(s) 193, 250
MboII GAAGA 2 cut(s) 223, 449
MhlI GDGCHC 2 cut(s) 87, 414
MlsI TGGCCA 1 cut(s) 313
MluCI AATT 3 cut(s) 166, 260, 417
MluNI TGGCCA 1 cut(s) 313
MlyI GAGTC 3 cut(s) 101, 271, 478
MnlI CCTC 3 cut(s) 46, 68, 414
Mox20I TGGCCA 1 cut(s) 313
Mph1103I ATGCAT 1 cut(s) 141
MscI TGGCCA 1 cut(s) 313
MslI CAYNNNNRTG 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 313
MspR9I CCNGG 2 cut(s) 106, 274
MvaI CCWGG 2 cut(s) 106, 274
NlaIII CATG 2 cut(s) 250, 312
NmuCI GTSAC 1 cut(s) 193
NsiI ATGCAT 1 cut(s) 141
NspV TTCGAA 2 cut(s) 100, 435
PfeI GAWTC 1 cut(s) 43
PfoI TCCNGGA 1 cut(s) 272
PkrI GCNGC 1 cut(s) 224
PleI GAGTC 3 cut(s) 100, 271, 477
PpsI GAGTC 3 cut(s) 100, 271, 477
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 2 cut(s) 104, 272
PspGI CCWGG 2 cut(s) 104, 272
PspPI GGNCC 2 cut(s) 55, 186
PspPPI RGGWCCY 1 cut(s) 55
RsaI GTAC 2 cut(s) 400, 449
RsaNI GTAC 2 cut(s) 399, 448
RseI CAYNNNNRTG 1 cut(s) 353
SatI GCNGC 1 cut(s) 223
Sau96I GGNCC 2 cut(s) 55, 186
SchI GAGTC 3 cut(s) 101, 271, 478
ScrFI CCNGG 2 cut(s) 106, 274
SduI GDGCHC 2 cut(s) 87, 414
SetI ASST 6 cut(s) 60, 113, 224, 400, 430, 453
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 2 cut(s) 112, 303
SfuI TTCGAA 2 cut(s) 100, 435
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
Sse9I AATT 3 cut(s) 166, 260, 417
SspMI CTAG 1 cut(s) 425
StyD4I CCNGG 2 cut(s) 104, 272
TaaI ACNGT 1 cut(s) 149
TaiI ACGT 1 cut(s) 453
TaqI TCGA 4 cut(s) 100, 376, 435, 483
TasI AATT 3 cut(s) 166, 260, 417
TfiI GAWTC 1 cut(s) 43
TscAI CASTG 2 cut(s) 202, 343
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 222
Tsp45I GTSAC 1 cut(s) 193
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 2 cut(s) 202, 343
VneI GTGCAC 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 55
XspI CTAG 1 cut(s) 425
Zsp2I ATGCAT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.