Rh1BG158200

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000234
Physical Location & Seq
Reverse (-)
25694097 .. 25696157
2061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG158200.1

Sequence Viewer

Length: 909 bp
ATGAGGGAGCGTAGGATGGATAGGAAGTGCTTGTCACTCTTCTGTGCTGATACATTTGCCAAGTTTTCGGAGATAGAGCTTCCTATGATCAAAATTGAATCACATTTCCGCGTTGTGGTGGGTTCCTACAATGGAGTGGTTTGCTTATATGATAGTGATTTTGAAACTTATCTATGGAATCCATCAATCAGAAAATTCAAGAGACTTCCCCAGGTCCTCAATGATAGAAGGGGGCAATTAGCTCACTTTGCTATCTCGTTCGGGTTCCATCCTGAAGGTGATGATTATAAAGTTGTGAGAATTTTGACATTTGAACGTCATATGATTGAGGTTGAGGTTTACAGCCATAGGTTGGAGTATTGGAGAAGAATTAATGCAGTTCCCCCTAATTCACATGAACTGTATATTCAGGGAGAAGGCACATGTGTGAATGGTGTTGTGTACTGGGTCATAAAAGAGTCTTTCCCATCTTGCAACTCCATCCTTTCTTTTGATCTGGGCAATGAGAATTTTCAAACAGTGAGGCTTTCTGATAGTCTGCTCAGGGCGATTGGTGATCCACGGCGTTTTCCAGTTAGTATTCGAGTGTTTGAGAAATCCCTTTCTTTGTTTCATGAAAGACGAGAGGGGACTGTTCGGTACTGTGACATATGGGTTCTGGAAATGGGTAGTTGGAAATTGTTTCACACGATTCTTCTCCCAGCTCGTGGATGTATAGCCTGGCCAGTGGGCTTTGCATCAAATGGTCAAGTTCATATTGTGATGTCAAGTAGAAAGGTTCGCAGCAAAACATTGGTTTTATATGATCTCAAATCACAACGAGTCAAGGATTCTGAAATCAAACTGCATGCGTATAGACCAAGCGGATACATCGATTATTTTAGGGAGAGTTTGGTGTTACTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

302

Amino Acids

35.38

Weight (kDa)

9.0

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 35 - 282 2.4e-21 F-box associated beta propeller domain
FBA_1 PF07734 42 - 236 4.2e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AccB7I CCANNNNNTGG 2 cut(s) 352, 707
AccII CGCG 1 cut(s) 111
AciI CCGC 2 cut(s) 109, 864
AclWI GGATC 1 cut(s) 551
AcoI YGGCCR 1 cut(s) 722
AcsI RAATTY 3 cut(s) 194, 300, 508
AcuI CTGAAG 1 cut(s) 294
AfaI GTAC 2 cut(s) 443, 641
AfiI CCNNNNNNNGG 3 cut(s) 115, 352, 707
AflIII ACRYGT 1 cut(s) 422
AgsI TTSAA 5 cut(s) 98, 164, 199, 314, 515
AjnI CCWGG 2 cut(s) 210, 719
AleI CACNNNNGTG 1 cut(s) 425
AluBI AGCT 3 cut(s) 79, 242, 704
AluI AGCT 3 cut(s) 79, 242, 704
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 1 cut(s) 551
AoxI GGCC 1 cut(s) 722
ApeKI GCWGC 1 cut(s) 783
ApoI RAATTY 3 cut(s) 194, 300, 508
AseI ATTAAT 1 cut(s) 372
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 2 cut(s) 290, 566
AvaII GGWCC 1 cut(s) 214
BalI TGGCCA 1 cut(s) 724
BauI CACGAG 1 cut(s) 705
BbvI GCAGC 1 cut(s) 795
BccI CCATC 5 cut(s) 10, 190, 276, 475, 488
BceAI ACGGC 1 cut(s) 578
BciT130I CCWGG 2 cut(s) 212, 721
BciVI GTATCC 1 cut(s) 860
BclI TGATCA 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 196
BfuI GTATCC 1 cut(s) 860
BisI GCNGC 1 cut(s) 784
BlsI GCNGC 1 cut(s) 785
Bme1390I CCNGG 2 cut(s) 212, 721
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 2 cut(s) 124, 266
BmrFI CCNGG 2 cut(s) 212, 721
BmrI ACTGGG 1 cut(s) 454
BmsI GCATC 1 cut(s) 746
BmuI ACTGGG 1 cut(s) 454
Bpu10I CCTNAGC 1 cut(s) 542
Bsa29I ATCGAT 1 cut(s) 873
BsaJI CCNNGG 2 cut(s) 210, 560
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 352, 707
Bse1I ACTGG 3 cut(s) 449, 572, 725
Bse3DI GCAATG 1 cut(s) 508
BseBI CCWGG 2 cut(s) 212, 721
BseCI ATCGAT 1 cut(s) 873
BseDI CCNNGG 2 cut(s) 210, 560
BseGI GGATG 4 cut(s) 21, 268, 480, 716
BseLI CCNNNNNNNGG 3 cut(s) 115, 352, 707
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 1 cut(s) 556
BseNI ACTGG 3 cut(s) 449, 572, 725
BseXI GCAGC 1 cut(s) 795
BseYI CCCAGC 1 cut(s) 700
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 724
BshVI ATCGAT 1 cut(s) 873
BslFI GGGAC 1 cut(s) 643
BslI CCNNNNNNNGG 3 cut(s) 115, 352, 707
BsmAI GTCTC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 643
BsnI GGCC 1 cut(s) 724
Bsp143I GATC 4 cut(s) 87, 493, 556, 805
BspACI CCGC 2 cut(s) 109, 864
BspANI GGCC 1 cut(s) 724
BspCNI CTCAG 1 cut(s) 555
BspDI ATCGAT 1 cut(s) 873
BspFNI CGCG 1 cut(s) 111
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 2 cut(s) 124, 266
BspPI GGATC 1 cut(s) 551
BsrDI GCAATG 1 cut(s) 508
BsrI ACTGG 3 cut(s) 449, 572, 725
BssECI CCNNGG 2 cut(s) 210, 560
BssMI GATC 4 cut(s) 87, 493, 556, 805
BssSI CACGAG 1 cut(s) 705
Bst2BI CACGAG 1 cut(s) 705
Bst2UI CCWGG 2 cut(s) 212, 721
Bst4CI ACNGT 4 cut(s) 402, 520, 634, 644
Bst6I CTCTTC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 849
BstDEI CTNAG 1 cut(s) 542
BstDSI CCRYGG 1 cut(s) 560
BstF5I GGATG 4 cut(s) 21, 268, 480, 716
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 4 cut(s) 90, 496, 559, 808
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 4 cut(s) 87, 493, 556, 805
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 2 cut(s) 212, 721
BstNSI RCATGY 2 cut(s) 426, 851
BstSCI CCNGG 2 cut(s) 210, 719
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 795
Bsu15I ATCGAT 1 cut(s) 873
BsuI GTATCC 1 cut(s) 860
BsuRI GGCC 1 cut(s) 724
BsuTUI ATCGAT 1 cut(s) 873
BtgI CCRYGG 1 cut(s) 560
BtsCI GGATG 4 cut(s) 21, 268, 480, 716
BtsIMutI CAGTG 2 cut(s) 525, 732
Cac8I GCNNGC 1 cut(s) 849
CciI TCATGA 1 cut(s) 613
Cfr13I GGNCC 1 cut(s) 214
ClaI ATCGAT 1 cut(s) 873
Csp6I GTAC 2 cut(s) 442, 640
CviAII CATG 4 cut(s) 395, 423, 614, 848
CviJI RGCY 8 cut(s) 79, 242, 345, 526, 704, 719, 724, 732
CviKI_1 RGCY 8 cut(s) 79, 242, 345, 526, 704, 719, 724, 732
CviQI GTAC 2 cut(s) 442, 640
DdeI CTNAG 1 cut(s) 542
DpnI GATC 4 cut(s) 89, 495, 558, 807
DpnII GATC 4 cut(s) 87, 493, 556, 805
EaeI YGGCCR 1 cut(s) 722
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 214
EcoRII CCWGG 2 cut(s) 210, 719
FaeI CATG 4 cut(s) 398, 426, 617, 851
FaqI GGGAC 1 cut(s) 643
FatI CATG 4 cut(s) 394, 422, 613, 847
FauNDI CATATG 2 cut(s) 321, 650
FbaI TGATCA 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 784
FokI GGATG 4 cut(s) 28, 255, 467, 723
Fsp4HI GCNGC 1 cut(s) 784
GluI GCNGC 1 cut(s) 784
GsaI CCCAGC 1 cut(s) 704
HaeIII GGCC 1 cut(s) 724
Hin1II CATG 4 cut(s) 398, 426, 617, 851
HinfI GANTC 6 cut(s) 98, 178, 458, 691, 822, 830
HphI GGTGA 2 cut(s) 290, 566
Hpy166II GTNNAC 2 cut(s) 340, 442
Hpy188I TCNGA 4 cut(s) 70, 191, 532, 835
Hpy188III TCNNGA 4 cut(s) 199, 272, 614, 659
Hpy8I GTNNAC 2 cut(s) 340, 442
HpyAV CCTTC 3 cut(s) 222, 269, 410
HpyCH4III ACNGT 4 cut(s) 402, 520, 634, 644
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 4 cut(s) 377, 474, 737, 847
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 542
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 4 cut(s) 398, 426, 617, 851
Ksp22I TGATCA 1 cut(s) 87
Kzo9I GATC 4 cut(s) 87, 493, 556, 805
LmnI GCTCC 1 cut(s) 7
Lsp1109I GCAGC 1 cut(s) 795
LweI GCATC 1 cut(s) 746
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 3 cut(s) 33, 644, 897
MalI GATC 4 cut(s) 89, 495, 558, 807
MboI GATC 4 cut(s) 87, 493, 556, 805
MboII GAAGA 3 cut(s) 31, 378, 686
MlsI TGGCCA 1 cut(s) 724
MluCI AATT 8 cut(s) 93, 194, 236, 300, 369, 388, 508, 677
MluNI TGGCCA 1 cut(s) 724
MlyI GAGTC 2 cut(s) 467, 831
MmeI TCCRAC 2 cut(s) 333, 653
MnlI CCTC 5 cut(s) 227, 322, 328, 516, 619
Mox20I TGGCCA 1 cut(s) 724
MscI TGGCCA 1 cut(s) 724
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 1 cut(s) 425
Msp20I TGGCCA 1 cut(s) 724
MspR9I CCNGG 2 cut(s) 212, 721
MvaI CCWGG 2 cut(s) 212, 721
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeI CATATG 2 cut(s) 321, 650
NdeII GATC 4 cut(s) 87, 493, 556, 805
NlaIII CATG 4 cut(s) 398, 426, 617, 851
NlaIV GGNNCC 2 cut(s) 124, 266
NmuCI GTSAC 2 cut(s) 33, 644
NspI RCATGY 2 cut(s) 426, 851
OliI CACNNNNGTG 1 cut(s) 425
PaeI GCATGC 1 cut(s) 851
PagI TCATGA 1 cut(s) 613
PciI ACATGT 1 cut(s) 422
PfeI GAWTC 4 cut(s) 98, 178, 691, 830
PflMI CCANNNNNTGG 2 cut(s) 352, 707
PkrI GCNGC 1 cut(s) 785
PleI GAGTC 2 cut(s) 466, 830
PpsI GAGTC 2 cut(s) 466, 830
PpuMI RGGWCCY 1 cut(s) 214
PscI ACATGT 1 cut(s) 422
PshBI ATTAAT 1 cut(s) 372
PsiI TTATAA 1 cut(s) 288
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 210, 719
PspFI CCCAGC 1 cut(s) 700
PspGI CCWGG 2 cut(s) 210, 719
PspN4I GGNNCC 2 cut(s) 124, 266
PspPI GGNCC 1 cut(s) 214
PspPPI RGGWCCY 1 cut(s) 214
RsaI GTAC 2 cut(s) 443, 641
RsaNI GTAC 2 cut(s) 442, 640
RseI CAYNNNNRTG 1 cut(s) 425
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 1 cut(s) 784
Sau3AI GATC 4 cut(s) 87, 493, 556, 805
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 2 cut(s) 467, 831
ScrFI CCNGG 2 cut(s) 212, 721
SfaNI GCATC 1 cut(s) 746
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 425
SphI GCATGC 1 cut(s) 851
Sse9I AATT 8 cut(s) 93, 194, 236, 300, 369, 388, 508, 677
SsiI CCGC 2 cut(s) 109, 864
StyD4I CCNGG 2 cut(s) 210, 719
TaaI ACNGT 4 cut(s) 402, 520, 634, 644
TaiI ACGT 1 cut(s) 319
TaqI TCGA 3 cut(s) 583, 873, 903
TasI AATT 8 cut(s) 93, 194, 236, 300, 369, 388, 508, 677
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 4 cut(s) 98, 178, 691, 830
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 2 cut(s) 525, 732
TseFI GTSAC 2 cut(s) 33, 644
TseI GCWGC 1 cut(s) 783
Tsp45I GTSAC 2 cut(s) 33, 644
TspDTI ATGAA 4 cut(s) 411, 602, 630, 743
TspRI CASTG 2 cut(s) 525, 732
Van91I CCANNNNNTGG 2 cut(s) 352, 707
VpaK11BI GGWCC 1 cut(s) 214
VspI ATTAAT 1 cut(s) 372
XapI RAATTY 3 cut(s) 194, 300, 508
XceI RCATGY 2 cut(s) 426, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.