Rh4DG230700

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000234
Physical Location & Seq
Reverse (-)
43668628 .. 43670805
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG230700.1

Sequence Viewer

Length: 723 bp
ATGTCGTGGGCATATTACGAATATCTCAAGGACCAGATGATAGTGTTGACCCTCAAAATGGCTGGGGTGGCCCTTGAGGTCACCTGCATCGGAGTGATTATTGTTCTTGGTCCCCCAAATCTTAGGGTGGTAAAGATGTTGCATGAATATAAAAAGCGTTCCATGGAAGTTGAGGTTTATAGTCTTAGCACCAACTCCGTGATTGAATTTACTCCTCGGTTAAATTCCCTGTGGTATCTCGCAGGTTATGAGGTTTGCAATGGATTAGTATATTGGCTGATTTATGAAGATTATTATAGGATCGTGTCCCTTGATACGGGAAGCGAAAAATTTGTTGTATTGGTGGTTCCAGATCCCATAGTGCCTGTTAAGGGTGCTGTCAAGATTCAAGTGTACAAGGAAACCATATGCCTGTTTCAAGGTCATACAGAGGTTGAAAACAGGCATACGGAGGTTGACTTATGGGTTCTAAAGGTTGATTTATGGGTTCTGCAAGAAGGCTCTTTTCAAAGGTTGCGTACTATTGTTCTGCCTCGAGCAAATTATTTCCTTCTAAGGGGCTTATTTATAGATAATATTACATTCTTGGTAGAAGGACAATCAAGATTCTGTGAGCTAGATTTGCTTGATCTTGAATCCAACCAACTTAAAAGTATCGGAATCCTTATCTGCGATAGTGAACTCCATGCTTACATAGGAAGTCTAGTTCTACTTGATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

240

Amino Acids

27.66

Weight (kDa)

5.17

Isoelectric Point (pI)

30.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 92
Acc36I ACCTGC 2 cut(s) 92, 233
AclWI GGATC 2 cut(s) 308, 347
AcsI RAATTY 3 cut(s) 206, 223, 329
AfaI GTAC 2 cut(s) 395, 520
AfiI CCNNNNNNNGG 4 cut(s) 58, 316, 371, 556
AgsI TTSAA 6 cut(s) 206, 389, 419, 437, 509, 635
AloI GAACNNNNNNTCC 2 cut(s) 690, 722
AluBI AGCT 1 cut(s) 616
AluI AGCT 1 cut(s) 616
AlwI GGATC 2 cut(s) 308, 347
Ama87I CYCGRG 1 cut(s) 534
AoxI GGCC 1 cut(s) 69
ApoI RAATTY 3 cut(s) 206, 223, 329
AspS9I GGNCC 3 cut(s) 31, 70, 110
AsuHPI GGTGA 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 534
AvaII GGWCC 2 cut(s) 31, 110
BclI TGATCA 1 cut(s) 715
BfaI CTAG 2 cut(s) 617, 704
BfuAI ACCTGC 2 cut(s) 92, 233
Bme18I GGWCC 2 cut(s) 31, 110
BmeT110I CYCGRG 1 cut(s) 534
BmgT120I GGNCC 3 cut(s) 31, 70, 110
BmiI GGNNCC 2 cut(s) 112, 348
BmsI GCATC 1 cut(s) 96
BpuEI CTTGAG 2 cut(s) 11, 95
BsaJI CCNNGG 2 cut(s) 162, 215
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 316, 371, 556
Bse3DI GCAATG 1 cut(s) 265
BseDI CCNNGG 2 cut(s) 162, 215
BseLI CCNNNNNNNGG 4 cut(s) 58, 316, 371, 556
BseMI GCAATG 1 cut(s) 265
BseRI GAGGAG 1 cut(s) 204
BseYI CCCAGC 1 cut(s) 62
BshFI GGCC 1 cut(s) 71
BsiHKCI CYCGRG 1 cut(s) 534
BslFI GGGAC 2 cut(s) 96, 292
BslI CCNNNNNNNGG 4 cut(s) 58, 316, 371, 556
BsmFI GGGAC 2 cut(s) 96, 292
BsnI GGCC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 534
Bsp1407I TGTACA 1 cut(s) 393
Bsp143I GATC 4 cut(s) 300, 352, 628, 715
Bsp19I CCATGG 1 cut(s) 162
BspANI GGCC 1 cut(s) 71
BspLI GGNNCC 2 cut(s) 112, 348
BspMI ACCTGC 2 cut(s) 92, 233
BspPI GGATC 2 cut(s) 308, 347
BsrDI GCAATG 1 cut(s) 265
BsrGI TGTACA 1 cut(s) 393
BssECI CCNNGG 2 cut(s) 162, 215
BssMI GATC 4 cut(s) 300, 352, 628, 715
BssT1I CCWWGG 1 cut(s) 162
BstAUI TGTACA 1 cut(s) 393
BstDEI CTNAG 3 cut(s) 122, 185, 554
BstDSI CCRYGG 1 cut(s) 162
BstEII GGTNACC 1 cut(s) 79
BstKTI GATC 4 cut(s) 303, 355, 631, 718
BstMBI GATC 4 cut(s) 300, 352, 628, 715
BstMWI GCNNNNNNNGC 2 cut(s) 68, 622
BstPI GGTNACC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 1 cut(s) 162
BveI ACCTGC 2 cut(s) 92, 233
Cfr13I GGNCC 3 cut(s) 31, 70, 110
Csp6I GTAC 2 cut(s) 394, 519
CviAII CATG 3 cut(s) 143, 163, 686
CviJI RGCY 6 cut(s) 62, 71, 277, 501, 561, 616
CviKI_1 RGCY 6 cut(s) 62, 71, 277, 501, 561, 616
CviQI GTAC 2 cut(s) 394, 519
DdeI CTNAG 3 cut(s) 122, 185, 554
DpnI GATC 4 cut(s) 302, 354, 630, 717
DpnII GATC 4 cut(s) 300, 352, 628, 715
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 2 cut(s) 31, 110
Eco88I CYCGRG 1 cut(s) 534
Eco91I GGTNACC 1 cut(s) 79
EcoO65I GGTNACC 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 3 cut(s) 146, 166, 689
FaqI GGGAC 2 cut(s) 96, 292
FatI CATG 3 cut(s) 142, 162, 685
FauNDI CATATG 1 cut(s) 407
FbaI TGATCA 1 cut(s) 715
FspBI CTAG 2 cut(s) 617, 704
GsaI CCCAGC 1 cut(s) 66
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 3 cut(s) 146, 166, 689
HincII GTYRAC 2 cut(s) 48, 457
HindII GTYRAC 2 cut(s) 48, 457
HinfI GANTC 4 cut(s) 385, 606, 635, 660
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 4 cut(s) 48, 394, 457, 680
Hpy188I TCNGA 2 cut(s) 92, 659
Hpy188III TCNNGA 4 cut(s) 350, 382, 603, 632
Hpy8I GTNNAC 4 cut(s) 48, 394, 457, 680
HpyAV CCTTC 3 cut(s) 491, 560, 587
HpyCH4V TGCA 4 cut(s) 87, 142, 258, 493
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 622
HpyF3I CTNAG 3 cut(s) 122, 185, 554
Hsp92II CATG 3 cut(s) 146, 166, 689
Ksp22I TGATCA 1 cut(s) 715
Kzo9I GATC 4 cut(s) 300, 352, 628, 715
LpnPI CCDG 9 cut(s) 47, 48, 97, 228, 242, 363, 378, 425, 427
LweI GCATC 1 cut(s) 96
MaeI CTAG 2 cut(s) 617, 704
MaeIII GTNAC 1 cut(s) 79
MalI GATC 4 cut(s) 302, 354, 630, 717
MboI GATC 4 cut(s) 300, 352, 628, 715
MboII GAAGA 1 cut(s) 299
MflI RGATCY 1 cut(s) 352
MluCI AATT 4 cut(s) 206, 223, 329, 541
MmeI TCCRAC 1 cut(s) 663
MnlI CCTC 8 cut(s) 62, 70, 166, 225, 244, 424, 445, 543
MseI TTAA 4 cut(s) 221, 369, 648, 721
MslI CAYNNNNRTG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 68, 622
NcoI CCATGG 1 cut(s) 162
NdeI CATATG 1 cut(s) 407
NdeII GATC 4 cut(s) 300, 352, 628, 715
NlaIII CATG 3 cut(s) 146, 166, 689
NlaIV GGNNCC 2 cut(s) 112, 348
NmuCI GTSAC 1 cut(s) 79
PaeR7I CTCGAG 1 cut(s) 534
PaqCI CACCTGC 1 cut(s) 92
PfeI GAWTC 4 cut(s) 385, 606, 635, 660
PspEI GGTNACC 1 cut(s) 79
PspFI CCCAGC 1 cut(s) 62
PspN4I GGNNCC 2 cut(s) 112, 348
PspPI GGNCC 3 cut(s) 31, 70, 110
PspXI VCTCGAGB 1 cut(s) 534
PsrI GAACNNNNNNTAC 2 cut(s) 330, 362
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 2 cut(s) 395, 520
RsaNI GTAC 2 cut(s) 394, 519
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 4 cut(s) 221, 369, 648, 721
Sau3AI GATC 4 cut(s) 300, 352, 628, 715
Sau96I GGNCC 3 cut(s) 31, 70, 110
SfaNI GCATC 1 cut(s) 96
Sfr274I CTCGAG 1 cut(s) 534
SinI GGWCC 2 cut(s) 31, 110
SlaI CTCGAG 1 cut(s) 534
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 3 cut(s) 26, 74, 534
SmoI CTYRAG 3 cut(s) 26, 74, 534
Sse9I AATT 4 cut(s) 206, 223, 329, 541
SspI AATATT 1 cut(s) 577
SspMI CTAG 2 cut(s) 617, 704
StyI CCWWGG 1 cut(s) 162
TaqI TCGA 1 cut(s) 535
TasI AATT 4 cut(s) 206, 223, 329, 541
TatI WGTACW 1 cut(s) 393
TfiI GAWTC 4 cut(s) 385, 606, 635, 660
Tru1I TTAA 4 cut(s) 221, 369, 648, 721
Tru9I TTAA 4 cut(s) 221, 369, 648, 721
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 159, 300
TspGWI ACGGA 2 cut(s) 187, 464
VpaK11BI GGWCC 2 cut(s) 31, 110
XapI RAATTY 3 cut(s) 206, 223, 329
XhoI CTCGAG 1 cut(s) 534
XspI CTAG 2 cut(s) 617, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.