Prupe.2G120700_v2.0.a1

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000234
Physical Location & Seq
Reverse (-)
17816946 .. 17818467
1522 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G120700.1

Sequence Viewer

Length: 948 bp
CCCAAAGACATACCCCATGAAATCTTGTTAGACATCATTGCAAAATTGCCTGTGAAATCTCTGTTGAAGTTCAGATGTGTTTGCAAGTCTTGGCATGCTTTAATTAGCAGCCCAAGTTTCATAAGCGCCCATCTCGAAAGGACTGCCATGAAAAGTGGTTGTGATTATTTACTTGTGCACTCTGGTAATCGAGATTGCTTGTCACGTACATATTTATGGAATCCATCAATCAGGAAGTTCAAGAGACTTCCCAAAAGTCTCAATCGTGACAAGTATCGTTACAGCATCGCTACCATTGCTCTTGGGTTTGGACTCGATGTTGGTGGAAATGACTACAAAGTTGTGAGAATTGCGAGGTTTTCGCACGGCATATGTGTCGAGGTTTACAGCCTTGGGTTGGATTCTTGGAGAATAATCAATGCGCTTCCCCCTGTGACAAGCGACGTTTGGAATGAGAAATGGGCTTACTTGAATGGAGTTGTGTATTGGATTGTACAGGAGTTTTCTCCAGATTGGAGAGACATCATTTCTTTTGATATGGAGAATGAGGTTTTCCAAAGGATTATGCTTCCTGATAGACTGCTCACAGTGACAGATTCAATTTCCATTAGGGTGTTGGAGAAATCACTTTCTTTGTTCCATCATAGAAAAGAATGGGATCGTGGGTACCGTTACTACTATGACATATGGGTTCTGGCAATGGATTCCTGGAAAATGATTCCCACGATTTCTCTTCCGGCAAAGGGAAAAATTGCATGGCCATTGGCATTTACAGCAAATGGCGGTGTTCATTTTACAACGAGATACGAAAATTGGCAACACAGAAAGTTAGAGTTGTGCGATCCTAAATCGGAGCAAGTTACGGATACTGGAATAAAACTTGGTACCTATAGCAGAACCAGAAGGAGGATCTATGGTTACAGTGAGAGTCTAATTTTACTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

36.73

Weight (kDa)

9.37

Isoelectric Point (pI)

24.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 666, 884
AccB1I GGYRCC 2 cut(s) 666, 884
AciI CCGC 1 cut(s) 783
AclWI GGATC 3 cut(s) 666, 836, 917
AcoI YGGCCR 1 cut(s) 758
AfaI GTAC 4 cut(s) 208, 495, 668, 886
AfiI CCNNNNNNNGG 3 cut(s) 397, 743, 906
AgsI TTSAA 4 cut(s) 67, 241, 472, 600
AjnI CCWGG 1 cut(s) 707
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 3 cut(s) 238, 263, 513
Alw44I GTGCAC 1 cut(s) 176
AlwI GGATC 3 cut(s) 666, 836, 917
AoxI GGCC 1 cut(s) 758
ApaLI GTGCAC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 108
Asp718I GGTACC 2 cut(s) 666, 884
AspLEI GCGC 2 cut(s) 128, 424
BaeGI GKGCMC 1 cut(s) 180
BalI TGGCCA 1 cut(s) 760
BanI GGYRCC 2 cut(s) 666, 884
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 120
BccI CCATC 3 cut(s) 138, 232, 648
BceAI ACGGC 1 cut(s) 382
BcgI CGANNNNNNTGC 4 cut(s) 125, 159, 358, 392
BciT130I CCWGG 1 cut(s) 709
BciVI GTATCC 1 cut(s) 859
BcoDI GTCTC 3 cut(s) 238, 263, 513
BfmI CTRYAG 1 cut(s) 889
BfoI RGCGCY 1 cut(s) 129
BfuI GTATCC 1 cut(s) 859
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 709
BmiI GGNNCC 2 cut(s) 668, 886
BmrFI CCNGG 1 cut(s) 709
BmsI GCATC 1 cut(s) 294
BpmI CTGGAG 1 cut(s) 492
BsaAI YACGTR 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 391
Bsc4I CCNNNNNNNGG 3 cut(s) 397, 743, 906
Bse1I ACTGG 1 cut(s) 874
Bse3DI GCAATG 3 cut(s) 36, 294, 705
BseBI CCWGG 1 cut(s) 709
BseDI CCNNGG 1 cut(s) 391
BseLI CCNNNNNNNGG 3 cut(s) 397, 743, 906
BseMI GCAATG 3 cut(s) 36, 294, 705
BseNI ACTGG 1 cut(s) 874
BseSI GKGCMC 1 cut(s) 180
BseXI GCAGC 1 cut(s) 120
BshFI GGCC 1 cut(s) 760
BshNI GGYRCC 2 cut(s) 666, 884
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 1 cut(s) 737
BslI CCNNNNNNNGG 3 cut(s) 397, 743, 906
BsmAI GTCTC 3 cut(s) 238, 263, 513
BsnI GGCC 1 cut(s) 760
Bsp1286I GDGCHC 1 cut(s) 180
Bsp1407I TGTACA 1 cut(s) 493
Bsp143I GATC 3 cut(s) 658, 841, 909
BspACI CCGC 1 cut(s) 783
BspANI GGCC 1 cut(s) 760
BspLI GGNNCC 2 cut(s) 668, 886
BspPI GGATC 3 cut(s) 666, 836, 917
BspT107I GGYRCC 2 cut(s) 666, 884
BsrDI GCAATG 3 cut(s) 36, 294, 705
BsrGI TGTACA 1 cut(s) 493
BsrI ACTGG 1 cut(s) 874
BssECI CCNNGG 1 cut(s) 391
BssMI GATC 3 cut(s) 658, 841, 909
BssT1I CCWWGG 1 cut(s) 391
Bst2UI CCWGG 1 cut(s) 709
Bst4CI ACNGT 3 cut(s) 589, 671, 923
Bst6I CTCTTC 1 cut(s) 738
BstAUI TGTACA 1 cut(s) 493
BstBAI YACGTR 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 96
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 2 cut(s) 128, 424
BstKTI GATC 3 cut(s) 661, 844, 912
BstMAI GTCTC 3 cut(s) 238, 263, 513
BstMBI GATC 3 cut(s) 658, 841, 909
BstMWI GCNNNNNNNGC 2 cut(s) 296, 773
BstNI CCWGG 1 cut(s) 709
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 707
BstSFI CTRYAG 1 cut(s) 889
BstSLI GKGCMC 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 909
BstYI RGATCY 1 cut(s) 909
BsuI GTATCC 1 cut(s) 859
BsuRI GGCC 1 cut(s) 760
BtgZI GCGATG 1 cut(s) 271
BtsIMutI CAGTG 2 cut(s) 594, 928
Cac8I GCNNGC 1 cut(s) 96
CfoI GCGC 2 cut(s) 128, 424
Csp6I GTAC 4 cut(s) 207, 494, 667, 885
CviAII CATG 4 cut(s) 17, 95, 148, 756
CviJI RGCY 4 cut(s) 111, 390, 464, 760
CviKI_1 RGCY 4 cut(s) 111, 390, 464, 760
CviQI GTAC 4 cut(s) 207, 494, 667, 885
DpnI GATC 3 cut(s) 660, 843, 911
DpnII GATC 3 cut(s) 658, 841, 909
EaeI YGGCCR 1 cut(s) 758
Eam1104I CTCTTC 1 cut(s) 738
EarI CTCTTC 1 cut(s) 738
Eco130I CCWWGG 1 cut(s) 391
EcoRII CCWGG 1 cut(s) 707
EcoT14I CCWWGG 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 391
FaeI CATG 4 cut(s) 20, 98, 151, 759
FatI CATG 4 cut(s) 16, 94, 147, 755
FauNDI CATATG 2 cut(s) 371, 686
Fnu4HI GCNGC 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 109
GlaI GCGC 2 cut(s) 127, 423
GluI GCNGC 1 cut(s) 109
GsuI CTGGAG 1 cut(s) 492
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 1 cut(s) 760
HapII CCGG 1 cut(s) 737
HhaI GCGC 2 cut(s) 128, 424
Hin1II CATG 4 cut(s) 20, 98, 151, 759
Hin6I GCGC 2 cut(s) 126, 422
HinP1I GCGC 2 cut(s) 126, 422
HinfI GANTC 7 cut(s) 220, 312, 401, 596, 704, 718, 928
HpaII CCGG 1 cut(s) 737
Hpy166II GTNNAC 2 cut(s) 178, 385
Hpy188I TCNGA 2 cut(s) 74, 853
Hpy188III TCNNGA 7 cut(s) 134, 191, 232, 241, 266, 509, 572
Hpy8I GTNNAC 2 cut(s) 178, 385
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 1 cut(s) 897
HpyCH4III ACNGT 3 cut(s) 589, 671, 923
HpyCH4IV ACGT 2 cut(s) 205, 444
HpyCH4V TGCA 4 cut(s) 41, 84, 178, 755
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 773
HpySE526I ACGT 2 cut(s) 205, 444
Hsp92II CATG 4 cut(s) 20, 98, 151, 759
HspAI GCGC 2 cut(s) 126, 422
KpnI GGTACC 2 cut(s) 670, 888
Kzo9I GATC 3 cut(s) 658, 841, 909
LmnI GCTCC 1 cut(s) 853
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 1 cut(s) 294
MaeII ACGT 2 cut(s) 205, 444
MaeIII GTNAC 8 cut(s) 201, 266, 278, 433, 589, 671, 859, 917
MalI GATC 3 cut(s) 660, 843, 911
MboI GATC 3 cut(s) 658, 841, 909
MboII GAAGA 1 cut(s) 725
MflI RGATCY 1 cut(s) 909
MhlI GDGCHC 1 cut(s) 180
MlsI TGGCCA 1 cut(s) 760
MluCI AATT 7 cut(s) 44, 102, 348, 600, 750, 811, 933
MluNI TGGCCA 1 cut(s) 760
MlyI GAGTC 2 cut(s) 306, 937
MmeI TCCRAC 2 cut(s) 378, 597
MnlI CCTC 4 cut(s) 348, 373, 541, 900
Mox20I TGGCCA 1 cut(s) 760
MscI TGGCCA 1 cut(s) 760
MseI TTAA 1 cut(s) 101
MslI CAYNNNNRTG 2 cut(s) 214, 611
Msp20I TGGCCA 1 cut(s) 760
MspI CCGG 1 cut(s) 737
MspR9I CCNGG 1 cut(s) 709
MvaI CCWGG 1 cut(s) 709
MwoI GCNNNNNNNGC 2 cut(s) 296, 773
NdeI CATATG 2 cut(s) 371, 686
NdeII GATC 3 cut(s) 658, 841, 909
NlaIII CATG 4 cut(s) 20, 98, 151, 759
NlaIV GGNNCC 2 cut(s) 668, 886
NmuCI GTSAC 4 cut(s) 201, 266, 433, 589
NspI RCATGY 1 cut(s) 98
PaeI GCATGC 1 cut(s) 98
PcsI WCGNNNNNNNCGW 1 cut(s) 667
PfeI GAWTC 5 cut(s) 220, 401, 596, 704, 718
PfoI TCCNGGA 1 cut(s) 707
PkrI GCNGC 1 cut(s) 110
PleI GAGTC 2 cut(s) 306, 936
PpsI GAGTC 2 cut(s) 306, 936
Ppu21I YACGTR 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 707
PspGI CCWGG 1 cut(s) 707
PspN4I GGNNCC 2 cut(s) 668, 886
PsuI RGATCY 1 cut(s) 909
RsaI GTAC 4 cut(s) 208, 495, 668, 886
RsaNI GTAC 4 cut(s) 207, 494, 667, 885
RseI CAYNNNNRTG 2 cut(s) 214, 611
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 3 cut(s) 658, 841, 909
SchI GAGTC 2 cut(s) 306, 937
ScrFI CCNGG 1 cut(s) 709
SduI GDGCHC 1 cut(s) 180
SetI ASST 6 cut(s) 208, 359, 384, 447, 552, 890
SfaNI GCATC 1 cut(s) 294
SfcI CTRYAG 1 cut(s) 889
SmiMI CAYNNNNRTG 2 cut(s) 214, 611
SphI GCATGC 1 cut(s) 98
Sse9I AATT 7 cut(s) 44, 102, 348, 600, 750, 811, 933
SsiI CCGC 1 cut(s) 783
StyD4I CCNGG 1 cut(s) 707
StyI CCWWGG 1 cut(s) 391
TaaI ACNGT 3 cut(s) 589, 671, 923
TaiI ACGT 2 cut(s) 208, 447
TaqI TCGA 4 cut(s) 135, 190, 315, 378
TasI AATT 7 cut(s) 44, 102, 348, 600, 750, 811, 933
TatI WGTACW 1 cut(s) 493
TfiI GAWTC 5 cut(s) 220, 401, 596, 704, 718
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TscAI CASTG 2 cut(s) 594, 928
TseFI GTSAC 4 cut(s) 201, 266, 433, 589
TseI GCWGC 1 cut(s) 108
Tsp45I GTSAC 4 cut(s) 201, 266, 433, 589
TspDTI ATGAA 4 cut(s) 33, 109, 164, 779
TspGWI ACGGA 1 cut(s) 878
TspRI CASTG 2 cut(s) 594, 928
VneI GTGCAC 1 cut(s) 176
XceI RCATGY 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.