RLG00000013320

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000234
Physical Location & Seq
Forward (+)
29879645 .. 29880410
766 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013320

Sequence Viewer

Length: 336 bp
ATGTCTATTTGCATGCTATACCCACTGGCAGTACGAGGACCACCACCACCGTCAACATGGCCTTACTTGAATAAGTATCAAAGTATATTCTTCGGGATAAGAAACAAAAGCAGTGAGGATGTTGCTAGTTCCATCACTGAAGATCTTCACCTAGAAATCTTAGTAAGGCTCCCAGTAAAATCTCTCATTCAGTTTCAATGTGTATGCAAGTGGTGGACGGCTTATCCACGAGTTGTTCCTACATCAACACGTACACCAACTTATACAGAGGTTATTGACAATTTGACATTATGGCCAATAAGGATTATGGTCACATTAAGACAATTTAACATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

112

Amino Acids

12.9

Weight (kDa)

9.18

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 2 cut(s) 33, 253
AflIII ACRYGT 1 cut(s) 248
AgsI TTSAA 2 cut(s) 70, 197
AoxI GGCC 2 cut(s) 59, 293
Asp700I GAANNNNTTC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 38
BalI TGGCCA 1 cut(s) 295
BauI CACGAG 1 cut(s) 228
BccI CCATC 1 cut(s) 140
BceAI ACGGC 1 cut(s) 234
BfaI CTAG 2 cut(s) 126, 152
BglII AGATCT 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 170
BmrI ACTGGG 1 cut(s) 167
BmuI ACTGGG 1 cut(s) 167
BsaAI YACGTR 1 cut(s) 251
Bse1I ACTGG 2 cut(s) 30, 173
BseGI GGATG 1 cut(s) 124
BseNI ACTGG 2 cut(s) 30, 173
BshFI GGCC 2 cut(s) 61, 295
BsnI GGCC 2 cut(s) 61, 295
Bsp143I GATC 1 cut(s) 142
BspANI GGCC 2 cut(s) 61, 295
BspLI GGNNCC 1 cut(s) 170
BsrI ACTGG 2 cut(s) 30, 173
BssMI GATC 1 cut(s) 142
BssSI CACGAG 1 cut(s) 228
Bst2BI CACGAG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 160
BstF5I GGATG 1 cut(s) 124
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstNSI RCATGY 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 2 cut(s) 61, 295
BtsCI GGATG 1 cut(s) 124
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 3 cut(s) 23, 118, 135
Cac8I GCNNGC 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 38
Csp6I GTAC 2 cut(s) 32, 252
CviAII CATG 2 cut(s) 13, 57
CviJI RGCY 4 cut(s) 61, 169, 221, 295
CviKI_1 RGCY 4 cut(s) 61, 169, 221, 295
CviQI GTAC 2 cut(s) 32, 252
DdeI CTNAG 1 cut(s) 160
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
EaeI YGGCCR 1 cut(s) 293
Eco47I GGWCC 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 159
FaeI CATG 2 cut(s) 16, 60
FatI CATG 2 cut(s) 12, 56
FokI GGATG 1 cut(s) 131
FspBI CTAG 2 cut(s) 126, 152
HaeIII GGCC 2 cut(s) 61, 295
Hin1II CATG 2 cut(s) 16, 60
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 3 cut(s) 54, 216, 254
Hpy188III TCNNGA 1 cut(s) 94
Hpy8I GTNNAC 3 cut(s) 54, 216, 254
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 2 cut(s) 12, 207
HpyF3I CTNAG 1 cut(s) 160
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 2 cut(s) 16, 60
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 2 cut(s) 11, 186
MaeI CTAG 2 cut(s) 126, 152
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 310
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 3 cut(s) 82, 137, 152
MflI RGATCY 1 cut(s) 142
MlsI TGGCCA 1 cut(s) 295
MluCI AATT 2 cut(s) 280, 323
MluNI TGGCCA 1 cut(s) 295
MnlI CCTC 3 cut(s) 29, 109, 262
Mox20I TGGCCA 1 cut(s) 295
MroXI GAANNNNTTC 1 cut(s) 144
MscI TGGCCA 1 cut(s) 295
MseI TTAA 2 cut(s) 317, 327
Msp20I TGGCCA 1 cut(s) 295
NdeII GATC 1 cut(s) 142
NlaIII CATG 2 cut(s) 16, 60
NlaIV GGNNCC 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 310
NspI RCATGY 1 cut(s) 16
PaeI GCATGC 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 144
Ppu21I YACGTR 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 2 cut(s) 33, 253
RsaNI GTAC 2 cut(s) 32, 252
SaqAI TTAA 2 cut(s) 317, 327
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 1 cut(s) 38
SetI ASST 3 cut(s) 153, 253, 273
SinI GGWCC 1 cut(s) 38
SphI GCATGC 1 cut(s) 16
Sse9I AATT 2 cut(s) 280, 323
SspMI CTAG 2 cut(s) 126, 152
TaaI ACNGT 1 cut(s) 51
TaiI ACGT 1 cut(s) 253
TasI AATT 2 cut(s) 280, 323
Tru1I TTAA 2 cut(s) 317, 327
Tru9I TTAA 2 cut(s) 317, 327
TscAI CASTG 3 cut(s) 30, 118, 142
TseFI GTSAC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 310
TspRI CASTG 3 cut(s) 30, 118, 142
VpaK11BI GGWCC 1 cut(s) 38
XceI RCATGY 1 cut(s) 16
XcmI CCANNNNNNNNNTGG 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 2 cut(s) 126, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.