Rh2DG454300

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000234
Physical Location & Seq
Reverse (-)
65757621 .. 65759965
2345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG454300.1

Sequence Viewer

Length: 1152 bp
ATGAGAAGAAACAAATGCAAGAAGAGTAGTAGTAGTACTATTAGTAGTGTTAGTTATATCCCTGAAGAAATCTTGATCAACATCCTAGCAAGATTACCTGCAAAGTCGCTCCTTCGGTTTAGGTGTGTATCCCAGTCATGGCGTGGTTTGATTGGCAGCCCAAGTTTTGTTAGTAAACATCTTAATAGGAATGTTACAAAACTTTCGCATACCTATCTAATTGCCCTCCAGCGCTTGAGAGATAAGCCAGCACTTTGCCACTCGCTATTTTCTACTGAAACATTTGAGGAGTGTTTGAAGTTGAGACATCCCTTGTGGACTGAGGAACAGTTTAGGATATATGGTTCAAGTAATGGGCTGGTTTGTATTTCGGATCAAGTACTGCGGCCGAGTAGTCCTATATGCATATGGAATCCATGTATTAGGAAATTTAGGACTCTTCCACAATCAATATTCAAACCACATTATTCCAGTTATGATATCTCTCTCTCATTTGGGTTCCACCCGGAGCTTAATGACTACAGAGTGGTAACAATGGGTTGGTATGTTCGATCTATCATAAAGGTGCAGGTCTATAGTCTTAGTACTGGCTCTTGGAAGATGATTGAAGTAATTCCTCCTTGGTTAAAGTTCAATCCAGACTGGTGTCGAGGATGCGCATTTTTCAATGGAGTGGCATACTGGCTTTTTACAAAGTCAAAAAAGTTTAGGTTTGTGTCATTTGATACGGATAGTGAAGAATTTGAAGAATTAATGGTTCCAGATACTATTTCCACCAAGGGCTTCACATATGTTGGAGTCTACAATGGCTTGGTTTGCCTTTTTTATTCCTATCTTGAAGGTCCTGATTGCCAGAAACCACAAAAATATATGGACATATGGGTTCTGAAAGAACAGTCTTTTACCAAGTTGCACACTGCAGTTTTACTGCCCGGAAGAGACTATTTTCCATTGGGGTTTAGTATCCAGAACGAACTCATTGCGAAGGACAAAAAGCATACTAAAGGTGATGAAGGAGATACGGGCCAGATGGTTTTATATGATCTCGAAATGAAGCTGATAAAGAAAACAGGGATTAGCTTGGCGCAGGATAGTCATTACAAAACTTCAGCAGGTACTTACATTGAAAGTTTGGTTCTACTCGATCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

383

Amino Acids

44.24

Weight (kDa)

9.13

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 19 - 55 2.3e-08 F-box-like
F-box PF00646 20 - 57 7.9e-11 F-box domain
FBA_3 PF08268 106 - 300 2.3e-20 F-box associated beta propeller domain
FBA_1 PF07734 116 - 379 1.5e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 658
Acc36I ACCTGC 3 cut(s) 106, 559, 1103
AccI GTMKAC 1 cut(s) 801
AciI CCGC 1 cut(s) 385
AclWI GGATC 1 cut(s) 381
AcoI YGGCCR 1 cut(s) 386
AcsI RAATTY 2 cut(s) 428, 740
AcuI CTGAAG 2 cut(s) 84, 1092
AfaI GTAC 4 cut(s) 37, 381, 586, 1117
AfeI AGCGCT 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 9 cut(s) 298, 348, 457, 608, 634, 667, 746, 839, 1127
AloI GAACNNNNNNTCC 2 cut(s) 328, 360
AluBI AGCT 3 cut(s) 511, 1057, 1080
AluI AGCT 3 cut(s) 511, 1057, 1080
Alw26I GTCTC 2 cut(s) 298, 933
AlwI GGATC 1 cut(s) 381
Aor51HI AGCGCT 1 cut(s) 233
AoxI GGCC 2 cut(s) 386, 1024
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 2 cut(s) 428, 740
AseI ATTAAT 1 cut(s) 752
Asp700I GAANNNNTTC 1 cut(s) 612
AspLEI GCGC 3 cut(s) 234, 659, 1087
AspS9I GGNCC 2 cut(s) 842, 1024
AsuC2I CCSGG 2 cut(s) 506, 933
AsuHPI GGTGA 1 cut(s) 1019
AvaII GGWCC 1 cut(s) 842
BbvI GCAGC 1 cut(s) 168
BccI CCATC 1 cut(s) 1024
BcgI CGANNNNNNTGC 2 cut(s) 962, 996
BciVI GTATCC 2 cut(s) 139, 974
BclI TGATCA 1 cut(s) 75
BcnI CCSGG 2 cut(s) 506, 933
BcoDI GTCTC 2 cut(s) 298, 933
BfaI CTAG 1 cut(s) 86
BfmI CTRYAG 3 cut(s) 520, 574, 918
BfoI RGCGCY 1 cut(s) 235
BfuAI ACCTGC 3 cut(s) 106, 559, 1103
BfuI GTATCC 2 cut(s) 139, 974
BisI GCNGC 2 cut(s) 157, 386
BlsI GCNGC 2 cut(s) 158, 387
BmcAI AGTACT 3 cut(s) 37, 381, 586
Bme1390I CCNGG 2 cut(s) 506, 933
Bme18I GGWCC 1 cut(s) 842
BmgT120I GGNCC 2 cut(s) 842, 1024
BmiI GGNNCC 2 cut(s) 500, 759
BmrFI CCNGG 2 cut(s) 506, 933
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 644
BmuI ACTGGG 1 cut(s) 127
BoxI GACNNNNGTC 1 cut(s) 645
BpmI CTGGAG 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 256
BpuMI CCSGG 2 cut(s) 506, 933
BsaBI GATNNNNATC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 620, 777
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse1I ACTGG 5 cut(s) 133, 471, 592, 647, 686
Bse3DI GCAATG 1 cut(s) 978
Bse8I GATNNNNATC 1 cut(s) 80
BseDI CCNNGG 2 cut(s) 620, 777
BseGI GGATG 3 cut(s) 81, 307, 659
BseJI GATNNNNATC 1 cut(s) 80
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 1 cut(s) 978
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 5 cut(s) 133, 471, 592, 647, 686
BseRI GAGGAG 1 cut(s) 302
BseX3I CGGCCG 1 cut(s) 386
BseXI GCAGC 1 cut(s) 168
BsgI GTGCAG 1 cut(s) 587
Bsh1285I CGRYCG 2 cut(s) 389, 1147
BshFI GGCC 2 cut(s) 388, 1026
BsiEI CGRYCG 2 cut(s) 389, 1147
BsiSI CCGG 2 cut(s) 506, 933
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 2 cut(s) 298, 933
BsnI GGCC 2 cut(s) 388, 1026
Bsp143I GATC 5 cut(s) 75, 373, 551, 1042, 1144
BspACI CCGC 1 cut(s) 385
BspANI GGCC 2 cut(s) 388, 1026
BspCNI CTCAG 1 cut(s) 313
BspLI GGNNCC 2 cut(s) 500, 759
BspMAI CTGCAG 1 cut(s) 922
BspMI ACCTGC 3 cut(s) 106, 559, 1103
BspPI GGATC 1 cut(s) 381
BsrDI GCAATG 1 cut(s) 978
BsrI ACTGG 5 cut(s) 133, 471, 592, 647, 686
BssECI CCNNGG 2 cut(s) 620, 777
BssMI GATC 5 cut(s) 75, 373, 551, 1042, 1144
BssT1I CCWWGG 2 cut(s) 620, 777
Bst4CI ACNGT 2 cut(s) 330, 897
Bst6I CTCTTC 3 cut(s) 17, 444, 931
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 2 cut(s) 321, 581
BstF5I GGATG 3 cut(s) 81, 307, 659
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 3 cut(s) 234, 659, 1087
BstKTI GATC 5 cut(s) 78, 376, 554, 1045, 1147
BstMAI GTCTC 2 cut(s) 298, 933
BstMBI GATC 5 cut(s) 75, 373, 551, 1042, 1144
BstMCI CGRYCG 2 cut(s) 389, 1147
BstMWI GCNNNNNNNGC 1 cut(s) 816
BstPAI GACNNNNGTC 1 cut(s) 645
BstSCI CCNGG 2 cut(s) 504, 931
BstSFI CTRYAG 3 cut(s) 520, 574, 918
BstV1I GCAGC 1 cut(s) 168
BstZI CGGCCG 1 cut(s) 386
BsuI GTATCC 2 cut(s) 139, 974
BsuRI GGCC 2 cut(s) 388, 1026
BtsCI GGATG 3 cut(s) 81, 307, 659
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 1 cut(s) 915
BveI ACCTGC 3 cut(s) 106, 559, 1103
Cac8I GCNNGC 1 cut(s) 249
CfoI GCGC 3 cut(s) 234, 659, 1087
Cfr13I GGNCC 2 cut(s) 842, 1024
Csp6I GTAC 4 cut(s) 36, 380, 585, 1116
CviAII CATG 2 cut(s) 138, 417
CviQI GTAC 4 cut(s) 36, 380, 585, 1116
DdeI CTNAG 2 cut(s) 321, 581
DpnI GATC 5 cut(s) 77, 375, 553, 1044, 1146
DpnII GATC 5 cut(s) 75, 373, 551, 1042, 1144
EaeI YGGCCR 1 cut(s) 386
EagI CGGCCG 1 cut(s) 386
Eam1104I CTCTTC 3 cut(s) 17, 444, 931
EarI CTCTTC 3 cut(s) 17, 444, 931
EclXI CGGCCG 1 cut(s) 386
Eco130I CCWWGG 2 cut(s) 620, 777
Eco32I GATATC 1 cut(s) 481
Eco47I GGWCC 1 cut(s) 842
Eco47III AGCGCT 1 cut(s) 233
Eco52I CGGCCG 1 cut(s) 386
Eco57I CTGAAG 2 cut(s) 84, 1092
EcoO109I RGGNCCY 1 cut(s) 842
EcoRV GATATC 1 cut(s) 481
EcoT14I CCWWGG 2 cut(s) 620, 777
EcoT22I ATGCAT 1 cut(s) 407
ErhI CCWWGG 2 cut(s) 620, 777
FaeI CATG 2 cut(s) 141, 420
FatI CATG 2 cut(s) 137, 416
FauNDI CATATG 3 cut(s) 407, 790, 878
FbaI TGATCA 1 cut(s) 75
FblI GTMKAC 1 cut(s) 801
Fnu4HI GCNGC 2 cut(s) 157, 386
FokI GGATG 3 cut(s) 68, 294, 666
Fsp4HI GCNGC 2 cut(s) 157, 386
FspAI RTGCGCAY 1 cut(s) 658
FspBI CTAG 1 cut(s) 86
FspI TGCGCA 1 cut(s) 658
GlaI GCGC 3 cut(s) 233, 658, 1086
GluI GCNGC 2 cut(s) 157, 386
GsuI CTGGAG 1 cut(s) 212
HaeII RGCGCY 1 cut(s) 235
HaeIII GGCC 2 cut(s) 388, 1026
HapII CCGG 2 cut(s) 506, 933
HhaI GCGC 3 cut(s) 234, 659, 1087
Hin1II CATG 2 cut(s) 141, 420
Hin6I GCGC 3 cut(s) 232, 657, 1085
HinP1I GCGC 3 cut(s) 232, 657, 1085
HinfI GANTC 3 cut(s) 412, 436, 798
HpaII CCGG 2 cut(s) 506, 933
HphI GGTGA 1 cut(s) 1019
Hpy166II GTNNAC 3 cut(s) 176, 318, 802
Hpy188I TCNGA 2 cut(s) 373, 888
Hpy188III TCNNGA 7 cut(s) 73, 638, 761, 836, 845, 967, 1046
Hpy8I GTNNAC 3 cut(s) 176, 318, 802
HpyAV CCTTC 4 cut(s) 122, 833, 979, 1007
HpyCH4III ACNGT 2 cut(s) 330, 897
HpyCH4V TGCA 6 cut(s) 18, 101, 405, 568, 913, 920
HpyF10VI GCNNNNNNNGC 1 cut(s) 816
HpyF3I CTNAG 2 cut(s) 321, 581
Hsp92II CATG 2 cut(s) 141, 420
HspAI GCGC 3 cut(s) 232, 657, 1085
Ksp22I TGATCA 1 cut(s) 75
Kzo9I GATC 5 cut(s) 75, 373, 551, 1042, 1144
LmnI GCTCC 2 cut(s) 114, 508
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 1 cut(s) 644
MaeI CTAG 1 cut(s) 86
MaeIII GTNAC 2 cut(s) 193, 529
MalI GATC 5 cut(s) 77, 375, 553, 1044, 1146
MboI GATC 5 cut(s) 75, 373, 551, 1042, 1144
MboII GAAGA 8 cut(s) 18, 34, 77, 431, 610, 749, 758, 948
MluCI AATT 5 cut(s) 219, 428, 612, 740, 749
MlyI GAGTC 2 cut(s) 430, 807
MmeI TCCRAC 1 cut(s) 775
MnlI CCTC 5 cut(s) 236, 280, 316, 627, 644
Mph1103I ATGCAT 1 cut(s) 407
MroXI GAANNNNTTC 1 cut(s) 612
MseI TTAA 4 cut(s) 183, 513, 626, 752
MslI CAYNNNNRTG 1 cut(s) 563
MspI CCGG 2 cut(s) 506, 933
MspR9I CCNGG 2 cut(s) 506, 933
MwoI GCNNNNNNNGC 1 cut(s) 816
NciI CCSGG 2 cut(s) 506, 933
NdeI CATATG 3 cut(s) 407, 790, 878
NdeII GATC 5 cut(s) 75, 373, 551, 1042, 1144
NlaIII CATG 2 cut(s) 141, 420
NlaIV GGNNCC 2 cut(s) 500, 759
NmeAIII GCCGAG 1 cut(s) 414
NsbI TGCGCA 1 cut(s) 658
NsiI ATGCAT 1 cut(s) 407
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 1 cut(s) 412
PkrI GCNGC 2 cut(s) 158, 387
Ple19I CGATCG 1 cut(s) 1147
PleI GAGTC 2 cut(s) 430, 806
PpsI GAGTC 2 cut(s) 430, 806
PpuMI RGGWCCY 1 cut(s) 842
PshAI GACNNNNGTC 1 cut(s) 645
PshBI ATTAAT 1 cut(s) 752
Psp5II RGGWCCY 1 cut(s) 842
PspN4I GGNNCC 2 cut(s) 500, 759
PspPI GGNCC 2 cut(s) 842, 1024
PspPPI RGGWCCY 1 cut(s) 842
PstI CTGCAG 1 cut(s) 922
PvuI CGATCG 1 cut(s) 1147
RsaI GTAC 4 cut(s) 37, 381, 586, 1117
RsaNI GTAC 4 cut(s) 36, 380, 585, 1116
RseI CAYNNNNRTG 1 cut(s) 563
SaqAI TTAA 4 cut(s) 183, 513, 626, 752
SatI GCNGC 2 cut(s) 157, 386
Sau3AI GATC 5 cut(s) 75, 373, 551, 1042, 1144
Sau96I GGNCC 2 cut(s) 842, 1024
ScaI AGTACT 3 cut(s) 37, 381, 586
SchI GAGTC 2 cut(s) 430, 807
ScrFI CCNGG 2 cut(s) 506, 933
SfaNI GCATC 1 cut(s) 644
SfcI CTRYAG 3 cut(s) 520, 574, 918
SinI GGWCC 1 cut(s) 842
SmiMI CAYNNNNRTG 1 cut(s) 563
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 5 cut(s) 219, 428, 612, 740, 749
SsiI CCGC 1 cut(s) 385
SspI AATATT 1 cut(s) 453
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 2 cut(s) 504, 931
StyI CCWWGG 2 cut(s) 620, 777
TaaI ACNGT 2 cut(s) 330, 897
TaqI TCGA 4 cut(s) 550, 649, 1047, 1143
TasI AATT 5 cut(s) 219, 428, 612, 740, 749
TatI WGTACW 3 cut(s) 35, 379, 584
TauI GCSGC 1 cut(s) 388
TfiI GAWTC 1 cut(s) 412
Tru1I TTAA 4 cut(s) 183, 513, 626, 752
Tru9I TTAA 4 cut(s) 183, 513, 626, 752
TscAI CASTG 1 cut(s) 922
TseI GCWGC 1 cut(s) 156
TspDTI ATGAA 2 cut(s) 1026, 1067
TspGWI ACGGA 1 cut(s) 743
TspRI CASTG 1 cut(s) 922
VpaK11BI GGWCC 1 cut(s) 842
VspI ATTAAT 1 cut(s) 752
XapI RAATTY 2 cut(s) 428, 740
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 801
XmnI GAANNNNTTC 1 cut(s) 612
XspI CTAG 1 cut(s) 86
ZrmI AGTACT 3 cut(s) 37, 381, 586
Zsp2I ATGCAT 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.