Rmu_sc0016560.1_g000002

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016560.1
OG0000234
Physical Location & Seq
Forward (+)
8344 .. 9450
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016560.1_g000002.1.cds

Sequence Viewer

Length: 1107 bp
atgagaaacaaacgcagggaggatgttgccagttccatcactgaagatctccacatggacatcttagcaagactcccggtaaaatctctcattcggtttcagtgtgtatgcaagcggtggaggggtttgattcgcagctcaagttttgttacggcacatatcagacaacattcccatacccatctaattacggatgaccgctcaagttttgaccaggttgagctttgttactctctttttcattgtgaaagatttgagcagtccctggagttaaaacctccctttcatccccaactagactataattcccgactagactacttcaagatatatggttcaaaaaacggtttagtgtgtcttgctgggaatgtaatggattcaaacagccctatatacatatggaacccctctgttaggaaattcaggactcttccacaaccaagattcgatcattattgtgtggactgttttcccaagcatgttgatatccctctcttatttggattccacccagaactaaatgactataaggtgataaggatgatgctgcctggttccatcaaaatggaggtttatactcttagcacaaactcttggaagattattcaagtcattccaccttggcttaataccatgaagttttctactcgatctgaattttggaatggaatggcatattggcttgccaccaaagattcaatggttagggttgtgtcgtttgatactaacagtgaagaatttgaagagctagcggtcccaattacgattttgagtgatgattgggatgcatatatcgaagtgtacaaagaatcgatttgcctacttcatgtcaaagttgaactggataacgacgttggctgtgactctatcgacttctgggttctgcaagaacggtgttttaagaaactgcatactgtttattttcctcaagtatatcacgtcatttggggctttagtgtggataatgagctcttactagaagattattcttctgatggcgaattggcgttttataatcttgaatccaaacaggttcagaaaattcgaatcagttcctatttaagcgtacatacttacattgaaagtttagttttatttgatatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

368

Amino Acids

43.37

Weight (kDa)

5.87

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1014
AccBSI CCGCTC 1 cut(s) 201
AciI CCGC 3 cut(s) 115, 199, 752
AcsI RAATTY 4 cut(s) 419, 656, 737, 1041
AcuI CTGAAG 1 cut(s) 63
AfaI GTAC 2 cut(s) 803, 1068
AfiI CCNNNNNNNGG 1 cut(s) 414
AgsI TTSAA 9 cut(s) 325, 339, 381, 608, 699, 743, 839, 1022, 1082
AjiI CACGTC 1 cut(s) 940
AjnI CCWGG 3 cut(s) 213, 264, 550
AjuI GAANNNNNNNTTGG 2 cut(s) 661, 693
AluBI AGCT 4 cut(s) 138, 223, 748, 970
AluI AGCT 4 cut(s) 138, 223, 748, 970
Alw21I GWGCWC 1 cut(s) 972
AlwNI CAGNNNCTG 1 cut(s) 265
ApeKI GCWGC 2 cut(s) 135, 547
ApoI RAATTY 4 cut(s) 419, 656, 737, 1041
Asp700I GAANNNNTTC 1 cut(s) 1051
AspS9I GGNCC 1 cut(s) 754
AsuC2I CCSGG 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 544
AsuII TTCGAA 1 cut(s) 1045
AsuNHI GCTAGC 1 cut(s) 748
AvaII GGWCC 1 cut(s) 754
BanII GRGCYC 1 cut(s) 972
Bbv12I GWGCWC 1 cut(s) 972
BbvI GCAGC 2 cut(s) 147, 534
BccI CCATC 4 cut(s) 44, 189, 566, 989
BceAI ACGGC 1 cut(s) 168
BciT130I CCWGG 3 cut(s) 215, 266, 552
BcnI CCSGG 1 cut(s) 77
BfaI CTAG 4 cut(s) 296, 314, 749, 977
BglII AGATCT 1 cut(s) 46
BisI GCNGC 2 cut(s) 136, 548
BlsI GCNGC 2 cut(s) 137, 549
Bme1390I CCNGG 4 cut(s) 77, 215, 266, 552
Bme18I GGWCC 1 cut(s) 754
BmgBI CACGTC 1 cut(s) 940
BmgT120I GGNCC 1 cut(s) 754
BmiI GGNNCC 3 cut(s) 404, 556, 756
BmrFI CCNGG 4 cut(s) 77, 215, 266, 552
BmsI GCATC 2 cut(s) 534, 775
BmtI GCTAGC 1 cut(s) 752
BpmI CTGGAG 1 cut(s) 287
Bpu14I TTCGAA 1 cut(s) 1045
BpuEI CTTGAG 3 cut(s) 124, 187, 912
BpuMI CCSGG 1 cut(s) 77
Bsa29I ATCGAT 1 cut(s) 812
BsaJI CCNNGG 2 cut(s) 264, 620
Bsc4I CCNNNNNNNGG 1 cut(s) 414
Bse1I ACTGG 2 cut(s) 30, 846
BseBI CCWGG 3 cut(s) 215, 266, 552
BseCI ATCGAT 1 cut(s) 812
BseDI CCNNGG 2 cut(s) 264, 620
BseGI GGATG 5 cut(s) 28, 199, 286, 546, 790
BseLI CCNNNNNNNGG 1 cut(s) 414
BseNI ACTGG 2 cut(s) 30, 846
BseXI GCAGC 2 cut(s) 147, 534
BseYI CCCAGC 1 cut(s) 362
BshVI ATCGAT 1 cut(s) 812
BsiHKAI GWGCWC 1 cut(s) 972
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 2 cut(s) 247, 740
BslI CCNNNNNNNGG 1 cut(s) 414
BsmFI GGGAC 2 cut(s) 247, 740
Bsp119I TTCGAA 1 cut(s) 1045
Bsp1286I GDGCHC 1 cut(s) 972
Bsp1407I TGTACA 1 cut(s) 801
Bsp143I GATC 3 cut(s) 46, 448, 650
BspACI CCGC 3 cut(s) 115, 199, 752
BspDI ATCGAT 1 cut(s) 812
BspLI GGNNCC 3 cut(s) 404, 556, 756
BspOI GCTAGC 1 cut(s) 752
BspQI GCTCTTC 1 cut(s) 738
BspT104I TTCGAA 1 cut(s) 1045
BsrBI CCGCTC 1 cut(s) 201
BsrGI TGTACA 1 cut(s) 801
BsrI ACTGG 2 cut(s) 30, 846
BssECI CCNNGG 2 cut(s) 264, 620
BssMI GATC 3 cut(s) 46, 448, 650
BssT1I CCWWGG 1 cut(s) 620
Bst2UI CCWGG 3 cut(s) 215, 266, 552
Bst4CI ACNGT 5 cut(s) 347, 467, 731, 894, 916
Bst6I CTCTTC 2 cut(s) 435, 738
BstAUI TGTACA 1 cut(s) 801
BstBI TTCGAA 1 cut(s) 1045
BstC8I GCNNGC 3 cut(s) 113, 684, 750
BstDEI CTNAG 2 cut(s) 64, 581
BstENI CCTNNNNNAGG 1 cut(s) 412
BstF5I GGATG 5 cut(s) 28, 199, 286, 546, 790
BstKTI GATC 3 cut(s) 49, 451, 653
BstMBI GATC 3 cut(s) 46, 448, 650
BstNI CCWGG 3 cut(s) 215, 266, 552
BstNSI RCATGY 1 cut(s) 482
BstSCI CCNGG 4 cut(s) 75, 213, 264, 550
BstV1I GCAGC 2 cut(s) 147, 534
BstX2I RGATCY 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 565
BstYI RGATCY 1 cut(s) 46
Bsu15I ATCGAT 1 cut(s) 812
BsuTUI ATCGAT 1 cut(s) 812
BtrI CACGTC 1 cut(s) 940
BtsCI GGATG 5 cut(s) 28, 199, 286, 546, 790
BtsIMutI CAGTG 3 cut(s) 39, 107, 736
Cac8I GCNNGC 3 cut(s) 113, 684, 750
CaiI CAGNNNCTG 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 754
ClaI ATCGAT 1 cut(s) 812
CsiI ACCWGGT 1 cut(s) 213
Csp6I GTAC 2 cut(s) 802, 1067
CviAII CATG 4 cut(s) 55, 479, 634, 827
CviJI RGCY 9 cut(s) 138, 223, 387, 625, 682, 748, 858, 951, 970
CviKI_1 RGCY 9 cut(s) 138, 223, 387, 625, 682, 748, 858, 951, 970
CviQI GTAC 2 cut(s) 802, 1067
DdeI CTNAG 2 cut(s) 64, 581
DpnI GATC 3 cut(s) 48, 450, 652
DpnII GATC 3 cut(s) 46, 448, 650
Eam1104I CTCTTC 2 cut(s) 435, 738
EarI CTCTTC 2 cut(s) 435, 738
Ecl136II GAGCTC 1 cut(s) 970
Eco130I CCWWGG 1 cut(s) 620
Eco24I GRGCYC 1 cut(s) 972
Eco32I GATATC 1 cut(s) 487
Eco47I GGWCC 1 cut(s) 754
Eco53kI GAGCTC 1 cut(s) 970
Eco57I CTGAAG 1 cut(s) 63
EcoICRI GAGCTC 1 cut(s) 970
EcoNI CCTNNNNNAGG 1 cut(s) 412
EcoRII CCWGG 3 cut(s) 213, 264, 550
EcoRV GATATC 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 620
EcoT22I ATGCAT 1 cut(s) 790
EcoT38I GRGCYC 1 cut(s) 972
ErhI CCWWGG 1 cut(s) 620
FaeI CATG 4 cut(s) 58, 482, 637, 830
FaqI GGGAC 2 cut(s) 247, 740
FatI CATG 4 cut(s) 54, 478, 633, 826
FauNDI CATATG 1 cut(s) 398
Fnu4HI GCNGC 2 cut(s) 136, 548
FokI GGATG 5 cut(s) 35, 206, 273, 553, 797
FriOI GRGCYC 1 cut(s) 972
Fsp4HI GCNGC 2 cut(s) 136, 548
FspBI CTAG 4 cut(s) 296, 314, 749, 977
GluI GCNGC 2 cut(s) 136, 548
GsaI CCCAGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 287
HapII CCGG 1 cut(s) 77
Hin1II CATG 4 cut(s) 58, 482, 637, 830
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 544
Hpy166II GTNNAC 2 cut(s) 463, 802
Hpy188I TCNGA 4 cut(s) 164, 655, 994, 1038
Hpy188III TCNNGA 4 cut(s) 309, 325, 424, 1019
Hpy8I GTNNAC 2 cut(s) 463, 802
Hpy99I CGWCG 1 cut(s) 854
HpyCH4III ACNGT 5 cut(s) 347, 467, 731, 894, 916
HpyCH4IV ACGT 2 cut(s) 852, 939
HpyCH4V TGCA 4 cut(s) 111, 788, 886, 910
HpyF3I CTNAG 2 cut(s) 64, 581
HpySE526I ACGT 2 cut(s) 852, 939
Hsp92II CATG 4 cut(s) 58, 482, 637, 830
Kzo9I GATC 3 cut(s) 46, 448, 650
LguI GCTCTTC 1 cut(s) 738
Lsp1109I GCAGC 2 cut(s) 147, 534
LweI GCATC 2 cut(s) 534, 775
MabI ACCWGGT 1 cut(s) 213
MaeI CTAG 4 cut(s) 296, 314, 749, 977
MaeII ACGT 2 cut(s) 852, 939
MaeIII GTNAC 3 cut(s) 148, 227, 860
MalI GATC 3 cut(s) 48, 450, 652
MbiI CCGCTC 1 cut(s) 201
MboI GATC 3 cut(s) 46, 448, 650
MboII GAAGA 7 cut(s) 56, 422, 610, 746, 755, 981, 992
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 972
MluCI AATT 8 cut(s) 186, 304, 419, 656, 737, 759, 1001, 1041
MlyI GAGTC 3 cut(s) 66, 421, 857
MnlI CCTC 7 cut(s) 13, 114, 288, 418, 501, 562, 936
Mph1103I ATGCAT 1 cut(s) 790
MroXI GAANNNNTTC 1 cut(s) 1051
MseI TTAA 4 cut(s) 272, 627, 900, 1061
MslI CAYNNNNRTG 2 cut(s) 456, 563
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 4 cut(s) 77, 215, 266, 552
MvaI CCWGG 3 cut(s) 215, 266, 552
NciI CCSGG 1 cut(s) 77
NdeI CATATG 1 cut(s) 398
NdeII GATC 3 cut(s) 46, 448, 650
NheI GCTAGC 1 cut(s) 748
NlaIII CATG 4 cut(s) 58, 482, 637, 830
NlaIV GGNNCC 3 cut(s) 404, 556, 756
NmuCI GTSAC 1 cut(s) 860
NsiI ATGCAT 1 cut(s) 790
NspI RCATGY 1 cut(s) 482
NspV TTCGAA 1 cut(s) 1045
PciSI GCTCTTC 1 cut(s) 738
PdmI GAANNNNTTC 1 cut(s) 1051
PfeI GAWTC 8 cut(s) 130, 377, 444, 504, 695, 809, 1022, 1047
PkrI GCNGC 2 cut(s) 137, 549
PleI GAGTC 3 cut(s) 66, 421, 857
PpsI GAGTC 3 cut(s) 66, 421, 857
PsiI TTATAA 1 cut(s) 1014
Psp124BI GAGCTC 1 cut(s) 972
Psp6I CCWGG 3 cut(s) 213, 264, 550
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 3 cut(s) 213, 264, 550
PspN4I GGNNCC 3 cut(s) 404, 556, 756
PspPI GGNCC 1 cut(s) 754
PstNI CAGNNNCTG 1 cut(s) 265
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 2 cut(s) 803, 1068
RsaNI GTAC 2 cut(s) 802, 1067
RseI CAYNNNNRTG 2 cut(s) 456, 563
SacI GAGCTC 1 cut(s) 972
SapI GCTCTTC 1 cut(s) 738
SaqAI TTAA 4 cut(s) 272, 627, 900, 1061
SatI GCNGC 2 cut(s) 136, 548
Sau3AI GATC 3 cut(s) 46, 448, 650
Sau96I GGNCC 1 cut(s) 754
SchI GAGTC 3 cut(s) 66, 421, 857
ScrFI CCNGG 4 cut(s) 77, 215, 266, 552
SduI GDGCHC 1 cut(s) 972
SexAI ACCWGGT 1 cut(s) 213
SfaNI GCATC 2 cut(s) 534, 775
SfuI TTCGAA 1 cut(s) 1045
SinI GGWCC 1 cut(s) 754
SmiMI CAYNNNNRTG 2 cut(s) 456, 563
SmlI CTYRAG 3 cut(s) 139, 202, 927
SmoI CTYRAG 3 cut(s) 139, 202, 927
Sse9I AATT 8 cut(s) 186, 304, 419, 656, 737, 759, 1001, 1041
SsiI CCGC 3 cut(s) 115, 199, 752
SspMI CTAG 4 cut(s) 296, 314, 749, 977
SstI GAGCTC 1 cut(s) 972
StyD4I CCNGG 4 cut(s) 75, 213, 264, 550
StyI CCWWGG 1 cut(s) 620
TaaI ACNGT 5 cut(s) 347, 467, 731, 894, 916
TaiI ACGT 2 cut(s) 855, 942
TaqI TCGA 6 cut(s) 447, 649, 795, 812, 870, 1045
TasI AATT 8 cut(s) 186, 304, 419, 656, 737, 759, 1001, 1041
TatI WGTACW 1 cut(s) 801
TfiI GAWTC 8 cut(s) 130, 377, 444, 504, 695, 809, 1022, 1047
Tru1I TTAA 4 cut(s) 272, 627, 900, 1061
Tru9I TTAA 4 cut(s) 272, 627, 900, 1061
TscAI CASTG 3 cut(s) 46, 107, 736
TseFI GTSAC 1 cut(s) 860
TseI GCWGC 2 cut(s) 135, 547
Tsp45I GTSAC 1 cut(s) 860
TspDTI ATGAA 4 cut(s) 230, 275, 650, 815
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 3 cut(s) 46, 107, 736
VpaK11BI GGWCC 1 cut(s) 754
XagI CCTNNNNNAGG 1 cut(s) 412
XapI RAATTY 4 cut(s) 419, 656, 737, 1041
XceI RCATGY 1 cut(s) 482
XcmI CCANNNNNNNNNTGG 1 cut(s) 697
XmnI GAANNNNTTC 1 cut(s) 1051
XspI CTAG 4 cut(s) 296, 314, 749, 977
Zsp2I ATGCAT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.