FvH4_6g34412

F-box protein CPR30-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000234
Physical Location & Seq
Reverse (-)
27166151 .. 27167296
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34412.t1

Sequence Viewer

Length: 1146 bp
ATGAGTAGTTTCAACATCCCTGAAGAAATCGTGATCGATATCTTATTGAGACTACCCTCAAAATCACTCGTTCGGTTTACGTGTGTTTGCAAGTCATGGCAAGATTTGATTAGAAGCTCAAGTTTTGCTCGATCACATCTTAATAGGAATACAGCAAGACGTTCCCATAGATATCTGTATGCTTACCATCGCTCCACCACAGATCATGAACCTGCAAAACATTATCAGCACTCTCTTTTCTCTGTTGAAACATTTGAGCCGTGCTTGAATCTAAGACATCCCTTGTGGACTGGAAAACAATTCAGAATATATGGTTCATGCAATGGCCTTCTGTGCATCTCCGACAAGAATCTTCGTTCGAATAGTCCTATATGCATATGGAACCCATCTATTCAGAAGTTTAGGGTTCTTCCAAATATTGGGACGCCTTTGCGCCTTAAAAGTACTTACCGTCTCATATGGAACCCTATTCGGAAGTCATGTATCCGTAAAAGTCATGCCCGTCTCTCGTTTGGATTTGATCCACAGCTTAACGATTACATGGTTGTGAGGATTGTCGAATCCGAATTGTCTAATCTTGTTGAGGTAGTTGAGGTTTATACCCTCAGCACAAACTCATGGAAGAGGATTCGGGTAACCCCTCCTTGGTCAAATTCCATTTACATTCACATGGGAAGTGCATTTTTGAATGGAATAGAATACTGGACTGCTAAGACATGTTCAGGATATAAGATTGCTGCATTTGATACGAGGAGTAAACAATTTCAAGAACTCATGGTGCCAAAAGAAGATTCCATTTGGTTGCTGCTAGTGCGAGTGTGCCAAGAATCACTTTGCTTCTTTCATTACTATGAGGGATCCATTGACTTGTGGATGATGAAAGAACAGTGTTTGAACAAGGTGGGTAAAGCACATTTACCCGAGAAAGGAGGGTATCCGGTTCCACTGATCAGCTCTAGCATGGATAATGAACTAGTCATCATGCATCAGTATAGAGATGAACATGGATTGGAATTTGACCAAATGGCTATATTTAACATTGAATCCAGGCAATCTATTAGAACTGGGATTAGGTTGGAGCGGAAAGATTTCGGCTACTTTGATGGCGGTTCGTACATTGAAAGTCTGGTTTTGCTCAGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

382

Amino Acids

44.44

Weight (kDa)

9.02

Isoelectric Point (pI)

56.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 42 1.3e-09 F-box domain
F-box-like PF12937 5 - 44 2e-08 F-box-like
FBA_1 PF07734 84 - 295 1.8e-16 F-box associated beta propeller domain
FBA_3 PF08268 99 - 267 5.8e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 220
AccB1I GGYRCC 1 cut(s) 778
AccB7I CCANNNNNTGG 1 cut(s) 419
AccBSI CCGCTC 1 cut(s) 1081
AciI CCGC 2 cut(s) 1081, 1107
AclWI GGATC 3 cut(s) 515, 852, 865
AcsI RAATTY 2 cut(s) 652, 1013
AcuI CTGAAG 1 cut(s) 42
AcyI GRCGYC 1 cut(s) 425
AfaI GTAC 2 cut(s) 445, 1115
AfiI CCNNNNNNNGG 3 cut(s) 419, 645, 926
AflIII ACRYGT 2 cut(s) 80, 716
AgsI TTSAA 8 cut(s) 13, 248, 268, 688, 767, 895, 1043, 1121
AhlI ACTAGT 1 cut(s) 973
AjnI CCWGG 1 cut(s) 1046
AjuI GAANNNNNNNTTGG 2 cut(s) 775, 807
AluBI AGCT 3 cut(s) 117, 529, 954
AluI AGCT 3 cut(s) 117, 529, 954
Alw26I GTCTC 3 cut(s) 43, 458, 509
AlwI GGATC 3 cut(s) 515, 852, 865
Ama87I CYCGRG 1 cut(s) 920
AoxI GGCC 1 cut(s) 325
ApeKI GCWGC 2 cut(s) 737, 805
ApoI RAATTY 2 cut(s) 652, 1013
Asp700I GAANNNNTTC 1 cut(s) 1088
AspLEI GCGC 1 cut(s) 435
AsuII TTCGAA 1 cut(s) 359
AvaI CYCGRG 1 cut(s) 920
BamHI GGATCC 1 cut(s) 857
BanI GGYRCC 1 cut(s) 778
BbvCI CCTCAGC 1 cut(s) 605
BbvI GCAGC 2 cut(s) 724, 792
BccI CCATC 3 cut(s) 195, 394, 1097
BceAI ACGGC 1 cut(s) 244
BciT130I CCWGG 1 cut(s) 1048
BciVI GTATCC 2 cut(s) 494, 945
BclI TGATCA 1 cut(s) 948
BcoDI GTCTC 3 cut(s) 43, 458, 509
BcuI ACTAGT 1 cut(s) 973
BfaI CTAG 3 cut(s) 809, 957, 974
BfuAI ACCTGC 1 cut(s) 220
BfuI GTATCC 2 cut(s) 494, 945
BisI GCNGC 2 cut(s) 738, 806
BlsI GCNGC 2 cut(s) 739, 807
BmcAI AGTACT 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 1048
BmeT110I CYCGRG 1 cut(s) 920
BmiI GGNNCC 5 cut(s) 383, 464, 780, 859, 942
BmrFI CCNGG 1 cut(s) 1048
BmrI ACTGGG 1 cut(s) 1074
BmsI GCATC 2 cut(s) 345, 994
BmuI ACTGGG 1 cut(s) 1074
Bpu10I CCTNAGC 1 cut(s) 605
Bpu14I TTCGAA 1 cut(s) 359
BpuEI CTTGAG 1 cut(s) 103
Bsa29I ATCGAT 1 cut(s) 36
BsaAI YACGTR 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 425
BsaJI CCNNGG 1 cut(s) 644
BsaWI WCCGGW 1 cut(s) 937
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 3 cut(s) 419, 645, 926
Bse1I ACTGG 3 cut(s) 295, 707, 1069
Bse3DI GCAATG 1 cut(s) 328
Bse8I GATNNNNATC 1 cut(s) 38
BseBI CCWGG 1 cut(s) 1048
BseCI ATCGAT 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 644
BseGI GGATG 3 cut(s) 15, 277, 879
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 3 cut(s) 419, 645, 926
BseMI GCAATG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 619
BseNI ACTGG 3 cut(s) 295, 707, 1069
BseRI GAGGAG 1 cut(s) 766
BseXI GCAGC 2 cut(s) 724, 792
BshFI GGCC 1 cut(s) 327
BshNI GGYRCC 1 cut(s) 778
BshVI ATCGAT 1 cut(s) 36
BsiHKCI CYCGRG 1 cut(s) 920
BsiSI CCGG 1 cut(s) 938
BslFI GGGAC 1 cut(s) 436
BslI CCNNNNNNNGG 3 cut(s) 419, 645, 926
BsmAI GTCTC 3 cut(s) 43, 458, 509
BsmBI CGTCTC 2 cut(s) 458, 509
BsmFI GGGAC 1 cut(s) 436
BsnI GGCC 1 cut(s) 327
BsoBI CYCGRG 1 cut(s) 920
Bsp119I TTCGAA 1 cut(s) 359
Bsp143I GATC 6 cut(s) 33, 131, 202, 520, 857, 948
BspACI CCGC 2 cut(s) 1081, 1107
BspANI GGCC 1 cut(s) 327
BspCNI CTCAG 1 cut(s) 618
BspDI ATCGAT 1 cut(s) 36
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 5 cut(s) 383, 464, 780, 859, 942
BspMI ACCTGC 1 cut(s) 220
BspPI GGATC 3 cut(s) 515, 852, 865
BspT104I TTCGAA 1 cut(s) 359
BspT107I GGYRCC 1 cut(s) 778
BsrBI CCGCTC 1 cut(s) 1081
BsrDI GCAATG 1 cut(s) 328
BsrI ACTGG 3 cut(s) 295, 707, 1069
BssECI CCNNGG 1 cut(s) 644
BssMI GATC 6 cut(s) 33, 131, 202, 520, 857, 948
BssNI GRCGYC 1 cut(s) 425
BssT1I CCWWGG 1 cut(s) 644
Bst2UI CCWGG 1 cut(s) 1048
Bst4CI ACNGT 2 cut(s) 452, 888
Bst6I CTCTTC 1 cut(s) 617
BstACI GRCGYC 1 cut(s) 425
BstBAI YACGTR 1 cut(s) 81
BstBI TTCGAA 1 cut(s) 359
BstDEI CTNAG 4 cut(s) 272, 605, 711, 1136
BstEII GGTNACC 1 cut(s) 634
BstF5I GGATG 3 cut(s) 15, 277, 879
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 6 cut(s) 36, 134, 205, 523, 860, 951
BstMAI GTCTC 3 cut(s) 43, 458, 509
BstMBI GATC 6 cut(s) 33, 131, 202, 520, 857, 948
BstMWI GCNNNNNNNGC 2 cut(s) 333, 811
BstNI CCWGG 1 cut(s) 1048
BstNSI RCATGY 1 cut(s) 720
BstPI GGTNACC 1 cut(s) 634
BstSCI CCNGG 1 cut(s) 1046
BstV1I GCAGC 2 cut(s) 724, 792
BstX2I RGATCY 1 cut(s) 857
BstYI RGATCY 1 cut(s) 857
Bsu15I ATCGAT 1 cut(s) 36
BsuI GTATCC 2 cut(s) 494, 945
BsuRI GGCC 1 cut(s) 327
BsuTUI ATCGAT 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 173
BtsCI GGATG 3 cut(s) 15, 277, 879
BtsIMutI CAGTG 3 cut(s) 893, 944, 1144
BveI ACCTGC 1 cut(s) 220
CciI TCATGA 1 cut(s) 205
CfoI GCGC 1 cut(s) 435
ClaI ATCGAT 1 cut(s) 36
CseI GACGC 1 cut(s) 433
Csp6I GTAC 2 cut(s) 444, 1114
CviJI RGCY 7 cut(s) 117, 259, 327, 529, 954, 1028, 1095
CviKI_1 RGCY 7 cut(s) 117, 259, 327, 529, 954, 1028, 1095
CviQI GTAC 2 cut(s) 444, 1114
DdeI CTNAG 4 cut(s) 272, 605, 711, 1136
DpnI GATC 6 cut(s) 35, 133, 204, 522, 859, 950
DpnII GATC 6 cut(s) 33, 131, 202, 520, 857, 948
Eam1104I CTCTTC 1 cut(s) 617
EarI CTCTTC 1 cut(s) 617
Eco130I CCWWGG 1 cut(s) 644
Eco32I GATATC 2 cut(s) 40, 173
Eco57I CTGAAG 1 cut(s) 42
Eco88I CYCGRG 1 cut(s) 920
Eco91I GGTNACC 1 cut(s) 634
EcoO65I GGTNACC 1 cut(s) 634
EcoRII CCWGG 1 cut(s) 1046
EcoRV GATATC 2 cut(s) 40, 173
EcoT14I CCWWGG 1 cut(s) 644
EcoT22I ATGCAT 2 cut(s) 377, 987
ErhI CCWWGG 1 cut(s) 644
Esp3I CGTCTC 2 cut(s) 458, 509
FalI AAGNNNNNCTT 2 cut(s) 816, 848
FaqI GGGAC 1 cut(s) 436
FauNDI CATATG 2 cut(s) 377, 458
FbaI TGATCA 1 cut(s) 948
Fnu4HI GCNGC 2 cut(s) 738, 806
FokI GGATG 3 cut(s) 2, 264, 886
Fsp4HI GCNGC 2 cut(s) 738, 806
FspBI CTAG 3 cut(s) 809, 957, 974
GlaI GCGC 1 cut(s) 434
GluI GCNGC 2 cut(s) 738, 806
HaeIII GGCC 1 cut(s) 327
HapII CCGG 1 cut(s) 938
HgaI GACGC 1 cut(s) 433
HhaI GCGC 1 cut(s) 435
Hin1I GRCGYC 1 cut(s) 425
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HinfI GANTC 7 cut(s) 268, 349, 560, 628, 791, 827, 1043
HpaII CCGG 1 cut(s) 938
Hpy166II GTNNAC 3 cut(s) 78, 288, 758
Hpy188I TCNGA 5 cut(s) 305, 343, 396, 474, 565
Hpy188III TCNNGA 4 cut(s) 31, 206, 723, 767
Hpy8I GTNNAC 3 cut(s) 78, 288, 758
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 2 cut(s) 452, 888
HpyCH4IV ACGT 2 cut(s) 80, 160
HpyCH4V TGCA 8 cut(s) 90, 215, 321, 336, 375, 680, 740, 985
HpyF10VI GCNNNNNNNGC 2 cut(s) 333, 811
HpyF3I CTNAG 4 cut(s) 272, 605, 711, 1136
HpySE526I ACGT 2 cut(s) 80, 160
Hsp92I GRCGYC 1 cut(s) 425
HspAI GCGC 1 cut(s) 433
Ksp22I TGATCA 1 cut(s) 948
Kzo9I GATC 6 cut(s) 33, 131, 202, 520, 857, 948
LmnI GCTCC 2 cut(s) 197, 1078
Lsp1109I GCAGC 2 cut(s) 724, 792
LweI GCATC 2 cut(s) 345, 994
MaeI CTAG 3 cut(s) 809, 957, 974
MaeII ACGT 2 cut(s) 80, 160
MaeIII GTNAC 1 cut(s) 634
MalI GATC 6 cut(s) 35, 133, 204, 522, 859, 950
MbiI CCGCTC 1 cut(s) 1081
MboI GATC 6 cut(s) 33, 131, 202, 520, 857, 948
MboII GAAGA 5 cut(s) 35, 344, 401, 634, 800
MflI RGATCY 1 cut(s) 857
MluCI AATT 5 cut(s) 299, 566, 652, 761, 1013
MmeI TCCRAC 2 cut(s) 366, 1056
Mph1103I ATGCAT 2 cut(s) 377, 987
MroXI GAANNNNTTC 1 cut(s) 1088
MseI TTAA 5 cut(s) 141, 438, 531, 1035, 1144
MslI CAYNNNNRTG 3 cut(s) 545, 668, 849
MspI CCGG 1 cut(s) 938
MspR9I CCNGG 1 cut(s) 1048
MvaI CCWGG 1 cut(s) 1048
MwoI GCNNNNNNNGC 2 cut(s) 333, 811
NdeI CATATG 2 cut(s) 377, 458
NdeII GATC 6 cut(s) 33, 131, 202, 520, 857, 948
NlaIV GGNNCC 5 cut(s) 383, 464, 780, 859, 942
NsiI ATGCAT 2 cut(s) 377, 987
NspI RCATGY 1 cut(s) 720
NspV TTCGAA 1 cut(s) 359
PagI TCATGA 1 cut(s) 205
PciI ACATGT 1 cut(s) 716
PdmI GAANNNNTTC 1 cut(s) 1088
PfeI GAWTC 7 cut(s) 268, 349, 560, 628, 791, 827, 1043
PflMI CCANNNNNTGG 1 cut(s) 419
PkrI GCNGC 2 cut(s) 739, 807
Ppu21I YACGTR 1 cut(s) 81
PscI ACATGT 1 cut(s) 716
Psp6I CCWGG 1 cut(s) 1046
PspEI GGTNACC 1 cut(s) 634
PspGI CCWGG 1 cut(s) 1046
PspN4I GGNNCC 5 cut(s) 383, 464, 780, 859, 942
PsuI RGATCY 1 cut(s) 857
RsaI GTAC 2 cut(s) 445, 1115
RsaNI GTAC 2 cut(s) 444, 1114
RseI CAYNNNNRTG 3 cut(s) 545, 668, 849
SaqAI TTAA 5 cut(s) 141, 438, 531, 1035, 1144
SatI GCNGC 2 cut(s) 738, 806
Sau3AI GATC 6 cut(s) 33, 131, 202, 520, 857, 948
ScaI AGTACT 1 cut(s) 445
ScrFI CCNGG 1 cut(s) 1048
SfaNI GCATC 2 cut(s) 345, 994
SfuI TTCGAA 1 cut(s) 359
SmiMI CAYNNNNRTG 3 cut(s) 545, 668, 849
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
SpeI ACTAGT 1 cut(s) 973
Sse9I AATT 5 cut(s) 299, 566, 652, 761, 1013
SsiI CCGC 2 cut(s) 1081, 1107
SspI AATATT 1 cut(s) 418
SspMI CTAG 3 cut(s) 809, 957, 974
StyD4I CCNGG 1 cut(s) 1046
StyI CCWWGG 1 cut(s) 644
TaaI ACNGT 2 cut(s) 452, 888
TaiI ACGT 2 cut(s) 83, 163
TaqI TCGA 4 cut(s) 36, 130, 359, 558
TasI AATT 5 cut(s) 299, 566, 652, 761, 1013
TatI WGTACW 1 cut(s) 443
TfiI GAWTC 7 cut(s) 268, 349, 560, 628, 791, 827, 1043
Tru1I TTAA 5 cut(s) 141, 438, 531, 1035, 1144
Tru9I TTAA 5 cut(s) 141, 438, 531, 1035, 1144
TscAI CASTG 3 cut(s) 893, 951, 1144
TseI GCWGC 2 cut(s) 737, 805
TspDTI ATGAA 6 cut(s) 222, 306, 833, 893, 984, 1014
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 3 cut(s) 893, 951, 1144
Van91I CCANNNNNTGG 1 cut(s) 419
XapI RAATTY 2 cut(s) 652, 1013
XceI RCATGY 1 cut(s) 720
XmnI GAANNNNTTC 1 cut(s) 1088
XspI CTAG 3 cut(s) 809, 957, 974
ZrmI AGTACT 1 cut(s) 445
Zsp2I ATGCAT 2 cut(s) 377, 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.