RLG00000028872

Metacaspase-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000234
Physical Location & Seq
Forward (+)
29560167 .. 29573391
13225 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028872

Sequence Viewer

Length: 2076 bp
ATGAGCATTAATGGAGGTGACCAACGACAACTGGTGGTCGACTGTTGCAATTGCCAGACCCAAATCCCGCTGCCTTCTGTGATTCCGATATTCGTCCGCTGCAGCAGCTGCTATGCCAGTACCCGCGTCGCCTCTCCGGGCTCCACCCGCTCCCTCTATGGTGCTGTAGCCTACTATGTCGACGTCTTAATTTCAGGTTGCACTATTGTTTCTGGTAATCAAGTTAGTGGAAACACCGGGGACCATAATGGAAGTATTTCTGTTGGCAACACTCTCCGTCCCTTGCCCTACAACCACGCGCCGCCGGGACCTCAGCCGAACGTGCACGGCCGGAAGAAGGCGGTGATCTGCGGGATATCGTATAAAAACTCCAGGCATGAGCTCAAGGGTTGCATCAATTACGCCAAACGCATGCGGCATCTCCTCATCAAGAAGTTCAAGTTTCCAGAAGATTCCATTCTCATGCTCACTGAAGAAGAAACTCCCCCATCTAAGATTCCAAATAACTACAACATTAGAATGGCATTACGTTGGCTTGTACAAGGATGTCAACCGGGTGACTCCCTTCTGTTTCACTACTCTGGTCATGGTTCAAGGAAGAGGGATTATCATGGTGATGAAGTTGATGGATATGATGAAACCCTTTGTCCCCTTGATTTCGAAACCCAGGGTATGATTAGTGATGATTGGATAAATGCAACAATTGTTAGGCCCATTCCATATCAGGTCAAGCTTCATGCAATTATAGATTCTTGTAGGAGTGGCACCATACTGGATTTGCCATGGATTTGCAGAATGGACTGGGGTGGAAACCATAAATGGGACAAGGCATCAGGCGTGTGGAAAGGAACAAGTGGTGGAGAAGTTATATGTATCAGTGGTTGTGATGACCATCAAACCTCTGCGGAAACACCATCAATCCCAACAACAGGTGTCATGACTTCCTGCTTCATCCAAGCAATCGAGAGTGGACAGGCAGCCACATATGGGAGCTTACTCTATTTTATGCGTAATACCATTCGAAGTGGTGGTGGTGGTGGGCTAAGACAGAGGTGCACCTCTCTTACTGTCTCCGATCTGGTCATAGACGGCGGAGGCGAGCAAGGTTGGAGCGGCGGAGGGTTCCAAGTGTTTGGGGGGGGGGAACGATCTCAGGTACCAAGACAGGCTACTGTTGCGTTTTCCCTTGTGTTGGGGTGTTGGCGATCTGATGGAGGTCGAGGTGATCGATCTGGTCTAGGATCTGATATCAGTTTGAGACCAGGATCTAGGACGATCCAGCCGGCGAAGTCAGTTGATTGCCATGGTTCTGTGATGCGACGTGACTTGGTGGTAGCTGTGATGCAGTTCCGGCAACACTGGTGGTGTGCCTTCGTGCGCGGCATAGTTGCTGGGTCTAAGGACTTTTGGGCCTCCCTTAGGCTGCTAGGCCTTCTCTTGTGGGCTGTTTCTTTTTCGGAGATAGAGCTTCCAATGATCAAAATTAAATCATATTTCCGCATTGTGGGTACCTACAATGGAGTGGTTTGCTTGTATGATAGTGATTATGAAACATATCTATGGAATCCGTCAATCAGAAAATTCAAGAGACTTCCCCAGGCCCTCATTGATAGAAGGGGGCTATTAGCTCGCTCTGCTATCGGGTTCGGGTTCCATCTTGAAGGTGATGACTATAAAGTTGTGAGAATTTTGACATTTTTACGTCGTAATATAATTGAAGTTGAGGTCTACAGCCATAGGTTGGAGGCTTGGAGAAGAATTAGTGCAGTTCCCCCTACTTCACATGAACTGTATATTCTAGGAGAAGGCACATGTGTGAATGGGGTTCTGCACTGGGTTATAAAAGAGTCTTTCCCATGTTCCAACTCCATCCTTGATCTGGGCAATGAGATTTTTCAAACAGTGAGGCTTTCTGATAGTCTTCTCAGGGTGATTGGTGATCCATGGCATTTTCCACTATCAAGACCGCCAACTGCTGCCAAGCTGCCAAGTCAAAATGTTCAACGGGATGAATATGATGGATCCAGAATTGATGAAACTTGCTCAGGAACAGATGAGTCGGATGTCACCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C14 zf-LSD1

Protein Analysis

692

Amino Acids

76.46

Weight (kDa)

8.24

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C14 PF00656 111 - 341 9.6e-29 Caspase domain
FBA_3 PF08268 493 - 637 3.4e-09 F-box associated beta propeller domain
FBA_1 PF07734 502 - 617 3.6e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1841
AatII GACGTC 1 cut(s) 186
Acc65I GGTACC 2 cut(s) 1156, 1508
AccB1I GGYRCC 3 cut(s) 764, 1156, 1508
AccB7I CCANNNNNTGG 1 cut(s) 1741
AccBSI CCGCTC 2 cut(s) 150, 1113
AccI GTMKAC 3 cut(s) 39, 180, 1728
AccII CGCG 3 cut(s) 126, 299, 1380
AclWI GGATC 6 cut(s) 1249, 1270, 1273, 1934, 2016, 2029
AcoI YGGCCR 1 cut(s) 328
AcsI RAATTY 2 cut(s) 1580, 1686
AcuI CTGAAG 1 cut(s) 492
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 4 cut(s) 121, 540, 1158, 1510
AfiI CCNNNNNNNGG 9 cut(s) 337, 820, 929, 987, 1192, 1419, 1504, 1741, 1879
AflIII ACRYGT 1 cut(s) 1811
AgsI TTSAA 7 cut(s) 439, 594, 1585, 1661, 1718, 1898, 2003
AjiI CACGTC 1 cut(s) 1322
AjnI CCWGG 4 cut(s) 371, 666, 1261, 1596
AleI CACNNNNGTG 1 cut(s) 1814
AluBI AGCT 8 cut(s) 108, 382, 733, 993, 1337, 1468, 1628, 1984
AluI AGCT 8 cut(s) 108, 382, 733, 993, 1337, 1468, 1628, 1984
Alw21I GWGCWC 3 cut(s) 327, 384, 1058
Alw26I GTCTC 3 cut(s) 1075, 1252, 1582
Alw44I GTGCAC 2 cut(s) 323, 1054
AlwI GGATC 6 cut(s) 1249, 1270, 1273, 1934, 2016, 2029
AlwNI CAGNNNCTG 1 cut(s) 108
AoxI GGCC 5 cut(s) 328, 710, 1410, 1429, 1599
ApaLI GTGCAC 2 cut(s) 323, 1054
ApeKI GCWGC 9 cut(s) 70, 99, 102, 105, 108, 977, 1423, 1976, 1984
ApoI RAATTY 2 cut(s) 1580, 1686
AseI ATTAAT 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 256
Asp718I GGTACC 2 cut(s) 1156, 1508
AspLEI GCGC 2 cut(s) 301, 1380
AspS9I GGNCC 5 cut(s) 241, 308, 711, 1410, 1600
AsuC2I CCSGG 4 cut(s) 138, 238, 306, 555
AsuHPI GGTGA 9 cut(s) 29, 355, 569, 626, 1235, 1676, 1942, 1949, 2059
AsuII TTCGAA 2 cut(s) 660, 1021
AvaII GGWCC 2 cut(s) 241, 308
AxyI CCTNAGG 1 cut(s) 1418
BaeGI GKGCMC 2 cut(s) 327, 1058
BamHI GGATCC 1 cut(s) 2021
BanI GGYRCC 3 cut(s) 764, 1156, 1508
BanII GRGCYC 2 cut(s) 143, 384
BbsI GAAGAC 1 cut(s) 1913
Bbv12I GWGCWC 3 cut(s) 327, 384, 1058
BbvCI CCTCAGC 1 cut(s) 312
BbvI GCAGC 9 cut(s) 57, 86, 95, 114, 117, 989, 1410, 1963, 1971
BccI CCATC 8 cut(s) 496, 620, 900, 922, 1205, 1662, 1877, 2012
BceAI ACGGC 2 cut(s) 343, 1105
BciT130I CCWGG 4 cut(s) 373, 668, 1263, 1598
BclI TGATCA 1 cut(s) 1476
BcnI CCSGG 4 cut(s) 138, 238, 306, 555
BcoDI GTCTC 3 cut(s) 1075, 1252, 1582
BfaI CTAG 4 cut(s) 1238, 1269, 1427, 1799
BfmI CTRYAG 3 cut(s) 100, 165, 1729
Bme1390I CCNGG 8 cut(s) 138, 238, 306, 373, 555, 668, 1263, 1598
Bme18I GGWCC 2 cut(s) 241, 308
BmgBI CACGTC 1 cut(s) 1322
BmgT120I GGNCC 5 cut(s) 241, 308, 711, 1410, 1600
BmiI GGNNCC 9 cut(s) 142, 242, 309, 766, 1124, 1158, 1510, 1652, 2023
BmrFI CCNGG 8 cut(s) 138, 238, 306, 373, 555, 668, 1263, 1598
BmrI ACTGGG 2 cut(s) 811, 1843
BmsI GCATC 5 cut(s) 402, 427, 839, 1305, 1332
BmuI ACTGGG 2 cut(s) 811, 1843
BpiI GAAGAC 1 cut(s) 1913
BpmI CTGGAG 1 cut(s) 355
Bpu10I CCTNAGC 2 cut(s) 312, 2044
Bpu14I TTCGAA 2 cut(s) 660, 1021
BpuEI CTTGAG 1 cut(s) 368
BpuMI CCSGG 4 cut(s) 138, 238, 306, 555
Bsa29I ATCGAT 1 cut(s) 1228
BsaBI GATNNNNATC 1 cut(s) 891
BsaHI GRCGYC 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 1252
BsaJI CCNNGG 7 cut(s) 237, 666, 667, 782, 1303, 1596, 1943
Bsc4I CCNNNNNNNGG 9 cut(s) 337, 820, 929, 987, 1192, 1419, 1504, 1741, 1879
Bse118I RCCGGY 1 cut(s) 1282
Bse1I ACTGG 6 cut(s) 36, 117, 777, 806, 1364, 1838
Bse21I CCTNAGG 1 cut(s) 1418
Bse3DI GCAATG 1 cut(s) 1891
Bse8I GATNNNNATC 1 cut(s) 891
BseBI CCWGG 4 cut(s) 373, 668, 1263, 1598
BseCI ATCGAT 1 cut(s) 1228
BseDI CCNNGG 7 cut(s) 237, 666, 667, 782, 1303, 1596, 1943
BseGI GGATG 5 cut(s) 551, 951, 1869, 2014, 2068
BseJI GATNNNNATC 1 cut(s) 891
BseLI CCNNNNNNNGG 9 cut(s) 337, 820, 929, 987, 1192, 1419, 1504, 1741, 1879
BseMI GCAATG 1 cut(s) 1891
BseMII CTCAG 4 cut(s) 326, 1166, 1939, 2058
BseNI ACTGG 6 cut(s) 36, 117, 777, 806, 1364, 1838
BseRI GAGGAG 1 cut(s) 413
BseSI GKGCMC 2 cut(s) 327, 1058
BseX3I CGGCCG 1 cut(s) 328
BseXI GCAGC 9 cut(s) 57, 86, 95, 114, 117, 989, 1410, 1963, 1971
BseYI CCCAGC 1 cut(s) 1391
BsgI GTGCAG 2 cut(s) 1785, 1814
Bsh1236I CGCG 3 cut(s) 126, 299, 1380
Bsh1285I CGRYCG 1 cut(s) 331
BshFI GGCC 5 cut(s) 330, 712, 1412, 1431, 1601
BshNI GGYRCC 3 cut(s) 764, 1156, 1508
BshVI ATCGAT 1 cut(s) 1228
BsiEI CGRYCG 1 cut(s) 331
BsiHKAI GWGCWC 3 cut(s) 327, 384, 1058
BsiSI CCGG 7 cut(s) 137, 237, 305, 331, 554, 1283, 1351
BslFI GGGAC 5 cut(s) 254, 264, 321, 633, 836
BslI CCNNNNNNNGG 9 cut(s) 337, 820, 929, 987, 1192, 1419, 1504, 1741, 1879
BsmAI GTCTC 3 cut(s) 1075, 1252, 1582
BsmFI GGGAC 5 cut(s) 254, 264, 321, 633, 836
BsnI GGCC 5 cut(s) 330, 712, 1412, 1431, 1601
Bso31I GGTCTC 1 cut(s) 1252
Bsp119I TTCGAA 2 cut(s) 660, 1021
Bsp1286I GDGCHC 4 cut(s) 143, 327, 384, 1058
Bsp1407I TGTACA 1 cut(s) 538
Bsp19I CCATGG 3 cut(s) 782, 1303, 1943
BspANI GGCC 5 cut(s) 330, 712, 1412, 1431, 1601
BspCNI CTCAG 4 cut(s) 325, 1165, 1938, 2057
BspDI ATCGAT 1 cut(s) 1228
BspFNI CGCG 3 cut(s) 126, 299, 1380
BspHI TCATGA 1 cut(s) 936
BspLI GGNNCC 9 cut(s) 142, 242, 309, 766, 1124, 1158, 1510, 1652, 2023
BspMAI CTGCAG 1 cut(s) 104
BspPI GGATC 6 cut(s) 1249, 1270, 1273, 1934, 2016, 2029
BspT104I TTCGAA 2 cut(s) 660, 1021
BspT107I GGYRCC 3 cut(s) 764, 1156, 1508
BspTNI GGTCTC 1 cut(s) 1252
BsrBI CCGCTC 2 cut(s) 150, 1113
BsrDI GCAATG 1 cut(s) 1891
BsrFI RCCGGY 1 cut(s) 1282
BsrGI TGTACA 1 cut(s) 538
BsrI ACTGG 6 cut(s) 36, 117, 777, 806, 1364, 1838
BssAI RCCGGY 1 cut(s) 1282
BssECI CCNNGG 7 cut(s) 237, 666, 667, 782, 1303, 1596, 1943
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 3 cut(s) 782, 1303, 1943
Bst2UI CCWGG 4 cut(s) 373, 668, 1263, 1598
Bst4CI ACNGT 5 cut(s) 44, 1069, 1174, 1791, 1903
Bst6I CTCTTC 1 cut(s) 593
BstACI GRCGYC 1 cut(s) 183
BstAPI GCANNNNNTGC 1 cut(s) 108
BstAUI TGTACA 1 cut(s) 538
BstBI TTCGAA 2 cut(s) 660, 1021
BstC8I GCNNGC 4 cut(s) 413, 1100, 1284, 1630
BstDEI CTNAG 8 cut(s) 312, 492, 1043, 1152, 1398, 1418, 1925, 2044
BstDSI CCRYGG 3 cut(s) 782, 1303, 1943
BstEII GGTNACC 1 cut(s) 17
BstENI CCTNNNNNAGG 1 cut(s) 1417
BstF5I GGATG 5 cut(s) 551, 951, 1869, 2014, 2068
BstFNI CGCG 3 cut(s) 126, 299, 1380
BstHHI GCGC 2 cut(s) 301, 1380
BstMAI GTCTC 3 cut(s) 1075, 1252, 1582
BstMCI CGRYCG 1 cut(s) 331
BstMWI GCNNNNNNNGC 7 cut(s) 105, 108, 147, 322, 1175, 1351, 1634
BstNI CCWGG 4 cut(s) 373, 668, 1263, 1598
BstNSI RCATGY 2 cut(s) 415, 1815
BstPI GGTNACC 1 cut(s) 17
BstSCI CCNGG 8 cut(s) 136, 236, 304, 371, 553, 666, 1261, 1596
BstSFI CTRYAG 3 cut(s) 100, 165, 1729
BstSLI GKGCMC 2 cut(s) 327, 1058
BstUI CGCG 3 cut(s) 126, 299, 1380
BstV1I GCAGC 9 cut(s) 57, 86, 95, 114, 117, 989, 1410, 1963, 1971
BstV2I GAAGAC 1 cut(s) 1913
BstX2I RGATCY 3 cut(s) 1241, 1265, 2021
BstXI CCANNNNNNTGG 1 cut(s) 1133
BstYI RGATCY 3 cut(s) 1241, 1265, 2021
BstZI CGGCCG 1 cut(s) 328
Bsu15I ATCGAT 1 cut(s) 1228
Bsu36I CCTNAGG 1 cut(s) 1418
BsuRI GGCC 5 cut(s) 330, 712, 1412, 1431, 1601
BsuTUI ATCGAT 1 cut(s) 1228
BtgI CCRYGG 3 cut(s) 782, 1303, 1943
BtrI CACGTC 1 cut(s) 1322
BtsCI GGATG 5 cut(s) 551, 951, 1869, 2014, 2068
BtsIMutI CAGTG 6 cut(s) 468, 883, 1357, 1831, 1908, 2071
Cac8I GCNNGC 4 cut(s) 413, 1100, 1284, 1630
CaiI CAGNNNCTG 1 cut(s) 108
CciI TCATGA 1 cut(s) 936
CfoI GCGC 2 cut(s) 301, 1380
Cfr10I RCCGGY 1 cut(s) 1282
Cfr13I GGNCC 5 cut(s) 241, 308, 711, 1410, 1600
ClaI ATCGAT 1 cut(s) 1228
CseI GACGC 1 cut(s) 115
Csp6I GTAC 4 cut(s) 120, 539, 1157, 1509
CspCI CAANNNNNGTGG 2 cut(s) 1343, 1378
CviQI GTAC 4 cut(s) 120, 539, 1157, 1509
DdeI CTNAG 8 cut(s) 312, 492, 1043, 1152, 1398, 1418, 1925, 2044
EaeI YGGCCR 1 cut(s) 328
EagI CGGCCG 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 593
EarI CTCTTC 1 cut(s) 593
EciI GGCGGA 2 cut(s) 1107, 1131
Ecl136II GAGCTC 1 cut(s) 382
EclXI CGGCCG 1 cut(s) 328
Eco130I CCWWGG 3 cut(s) 782, 1303, 1943
Eco147I AGGCCT 1 cut(s) 1431
Eco24I GRGCYC 2 cut(s) 143, 384
Eco31I GGTCTC 1 cut(s) 1252
Eco32I GATATC 2 cut(s) 357, 1249
Eco47I GGWCC 2 cut(s) 241, 308
Eco52I CGGCCG 1 cut(s) 328
Eco53kI GAGCTC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 492
Eco81I CCTNAGG 1 cut(s) 1418
Eco91I GGTNACC 1 cut(s) 17
EcoICRI GAGCTC 1 cut(s) 382
EcoNI CCTNNNNNAGG 1 cut(s) 1417
EcoO109I RGGNCCY 2 cut(s) 308, 1600
EcoO65I GGTNACC 1 cut(s) 17
EcoRII CCWGG 4 cut(s) 371, 666, 1261, 1596
EcoRV GATATC 2 cut(s) 357, 1249
EcoT14I CCWWGG 3 cut(s) 782, 1303, 1943
EcoT38I GRGCYC 2 cut(s) 143, 384
ErhI CCWWGG 3 cut(s) 782, 1303, 1943
FaqI GGGAC 5 cut(s) 254, 264, 321, 633, 836
FauI CCCGC 4 cut(s) 75, 131, 155, 344
FauNDI CATATG 1 cut(s) 985
FbaI TGATCA 1 cut(s) 1476
FblI GTMKAC 3 cut(s) 39, 180, 1728
FokI GGATG 4 cut(s) 558, 938, 1856, 2021
FriOI GRGCYC 2 cut(s) 143, 384
FspBI CTAG 4 cut(s) 1238, 1269, 1427, 1799
GlaI GCGC 2 cut(s) 300, 1379
GsaI CCCAGC 1 cut(s) 1395
GsuI CTGGAG 1 cut(s) 355
HaeIII GGCC 5 cut(s) 330, 712, 1412, 1431, 1601
HapII CCGG 7 cut(s) 137, 237, 305, 331, 554, 1283, 1351
HgaI GACGC 1 cut(s) 115
HhaI GCGC 2 cut(s) 301, 1380
Hin1I GRCGYC 1 cut(s) 183
Hin6I GCGC 2 cut(s) 299, 1378
HinP1I GCGC 2 cut(s) 299, 1378
HincII GTYRAC 3 cut(s) 40, 181, 551
HindII GTYRAC 3 cut(s) 40, 181, 551
HindIII AAGCTT 1 cut(s) 731
HinfI GANTC 8 cut(s) 82, 452, 496, 560, 749, 1564, 1847, 2057
HpaII CCGG 7 cut(s) 137, 237, 305, 331, 554, 1283, 1351
HphI GGTGA 9 cut(s) 29, 355, 569, 626, 1235, 1676, 1942, 1949, 2059
Hpy166II GTNNAC 7 cut(s) 40, 181, 325, 551, 971, 1056, 1729
Hpy188I TCNGA 8 cut(s) 87, 1075, 1210, 1246, 1459, 1577, 1915, 2062
Hpy188III TCNNGA 9 cut(s) 430, 446, 937, 964, 1585, 1658, 1962, 2025, 2046
Hpy8I GTNNAC 7 cut(s) 40, 181, 325, 551, 971, 1056, 1729
Hpy99I CGWCG 4 cut(s) 131, 185, 1323, 1707
HpyAV CCTTC 8 cut(s) 84, 331, 575, 1381, 1442, 1608, 1655, 1799
HpyCH4III ACNGT 5 cut(s) 44, 1069, 1174, 1791, 1903
HpyCH4IV ACGT 5 cut(s) 183, 321, 529, 1321, 1702
HpyF10VI GCNNNNNNNGC 7 cut(s) 105, 108, 147, 322, 1175, 1351, 1634
HpyF3I CTNAG 8 cut(s) 312, 492, 1043, 1152, 1398, 1418, 1925, 2044
HpySE526I ACGT 5 cut(s) 183, 321, 529, 1321, 1702
Hsp92I GRCGYC 1 cut(s) 183
HspAI GCGC 2 cut(s) 299, 1378
KpnI GGTACC 2 cut(s) 1160, 1512
KroI GCCGGC 1 cut(s) 1282
KroNI GCCGGC 1 cut(s) 1284
Ksp22I TGATCA 1 cut(s) 1476
LmnI GCTCC 4 cut(s) 146, 155, 990, 1110
Lsp1109I GCAGC 9 cut(s) 57, 86, 95, 114, 117, 989, 1410, 1963, 1971
LweI GCATC 5 cut(s) 402, 427, 839, 1305, 1332
MaeI CTAG 4 cut(s) 1238, 1269, 1427, 1799
MaeII ACGT 5 cut(s) 183, 321, 529, 1321, 1702
MaeIII GTNAC 4 cut(s) 17, 557, 1322, 2065
MbiI CCGCTC 2 cut(s) 150, 1113
MboII GAAGA 7 cut(s) 346, 461, 485, 488, 610, 1767, 1913
MfeI CAATTG 2 cut(s) 49, 702
MflI RGATCY 3 cut(s) 1241, 1265, 2021
MhlI GDGCHC 4 cut(s) 143, 327, 384, 1058
MlyI GAGTC 3 cut(s) 554, 1856, 2066
MmeI TCCRAC 4 cut(s) 1088, 1722, 1887, 2040
MroNI GCCGGC 1 cut(s) 1282
MroXI GAANNNNTTC 1 cut(s) 256
MseI TTAA 3 cut(s) 9, 188, 1485
MslI CAYNNNNRTG 5 cut(s) 461, 518, 615, 1558, 1814
MspA1I CMGCKG 3 cut(s) 70, 99, 108
MspI CCGG 7 cut(s) 137, 237, 305, 331, 554, 1283, 1351
MspR9I CCNGG 8 cut(s) 138, 238, 306, 373, 555, 668, 1263, 1598
MunI CAATTG 2 cut(s) 49, 702
MvaI CCWGG 4 cut(s) 373, 668, 1263, 1598
MvnI CGCG 3 cut(s) 126, 299, 1380
MwoI GCNNNNNNNGC 7 cut(s) 105, 108, 147, 322, 1175, 1351, 1634
NaeI GCCGGC 1 cut(s) 1284
NciI CCSGG 4 cut(s) 138, 238, 306, 555
NcoI CCATGG 3 cut(s) 782, 1303, 1943
NdeI CATATG 1 cut(s) 985
NgoMIV GCCGGC 1 cut(s) 1282
NlaIV GGNNCC 9 cut(s) 142, 242, 309, 766, 1124, 1158, 1510, 1652, 2023
NmuCI GTSAC 4 cut(s) 17, 557, 1322, 2065
NspI RCATGY 2 cut(s) 415, 1815
NspV TTCGAA 2 cut(s) 660, 1021
OliI CACNNNNGTG 1 cut(s) 1814
PaeI GCATGC 1 cut(s) 415
PagI TCATGA 1 cut(s) 936
PasI CCCWGGG 1 cut(s) 667
PceI AGGCCT 1 cut(s) 1431
PciI ACATGT 1 cut(s) 1811
PcsI WCGNNNNNNNCGW 2 cut(s) 1095, 1225
PdiI GCCGGC 1 cut(s) 1284
PdmI GAANNNNTTC 1 cut(s) 256
PfeI GAWTC 5 cut(s) 82, 452, 496, 749, 1564
PflMI CCANNNNNTGG 1 cut(s) 1741
PleI GAGTC 3 cut(s) 554, 1855, 2065
PpsI GAGTC 3 cut(s) 554, 1855, 2065
PpuMI RGGWCCY 1 cut(s) 308
PscI ACATGT 1 cut(s) 1811
PshBI ATTAAT 1 cut(s) 9
PsiI TTATAA 1 cut(s) 1841
Psp124BI GAGCTC 1 cut(s) 384
Psp5II RGGWCCY 1 cut(s) 308
Psp6I CCWGG 4 cut(s) 371, 666, 1261, 1596
PspEI GGTNACC 1 cut(s) 17
PspFI CCCAGC 1 cut(s) 1391
PspGI CCWGG 4 cut(s) 371, 666, 1261, 1596
PspN4I GGNNCC 9 cut(s) 142, 242, 309, 766, 1124, 1158, 1510, 1652, 2023
PspPI GGNCC 5 cut(s) 241, 308, 711, 1410, 1600
PspPPI RGGWCCY 1 cut(s) 308
PstI CTGCAG 1 cut(s) 104
PstNI CAGNNNCTG 1 cut(s) 108
PsuI RGATCY 3 cut(s) 1241, 1265, 2021
PvuII CAGCTG 1 cut(s) 108
RsaI GTAC 4 cut(s) 121, 540, 1158, 1510
RsaNI GTAC 4 cut(s) 120, 539, 1157, 1509
RseI CAYNNNNRTG 5 cut(s) 461, 518, 615, 1558, 1814
SacI GAGCTC 1 cut(s) 384
SalI GTCGAC 2 cut(s) 38, 179
SaqAI TTAA 3 cut(s) 9, 188, 1485
Sau96I GGNCC 5 cut(s) 241, 308, 711, 1410, 1600
SchI GAGTC 3 cut(s) 554, 1856, 2066
ScrFI CCNGG 8 cut(s) 138, 238, 306, 373, 555, 668, 1263, 1598
SduI GDGCHC 4 cut(s) 143, 327, 384, 1058
SfaNI GCATC 5 cut(s) 402, 427, 839, 1305, 1332
SfcI CTRYAG 3 cut(s) 100, 165, 1729
SfuI TTCGAA 2 cut(s) 660, 1021
SinI GGWCC 2 cut(s) 241, 308
SmiMI CAYNNNNRTG 5 cut(s) 461, 518, 615, 1558, 1814
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SphI GCATGC 1 cut(s) 415
SseBI AGGCCT 1 cut(s) 1431
SspMI CTAG 4 cut(s) 1238, 1269, 1427, 1799
SstI GAGCTC 1 cut(s) 384
StuI AGGCCT 1 cut(s) 1431
StyD4I CCNGG 8 cut(s) 136, 236, 304, 371, 553, 666, 1261, 1596
StyI CCWWGG 3 cut(s) 782, 1303, 1943
TaaI ACNGT 5 cut(s) 44, 1069, 1174, 1791, 1903
TaiI ACGT 5 cut(s) 186, 324, 532, 1324, 1705
TaqI TCGA 7 cut(s) 39, 180, 660, 963, 1021, 1219, 1228
TatI WGTACW 1 cut(s) 538
TauI GCSGC 4 cut(s) 304, 418, 1116, 1383
TfiI GAWTC 5 cut(s) 82, 452, 496, 749, 1564
Tru1I TTAA 3 cut(s) 9, 188, 1485
Tru9I TTAA 3 cut(s) 9, 188, 1485
TscAI CASTG 5 cut(s) 475, 883, 1364, 1838, 1908
TseFI GTSAC 4 cut(s) 17, 557, 1322, 2065
TseI GCWGC 9 cut(s) 70, 99, 102, 105, 108, 977, 1423, 1976, 1984
Tsp45I GTSAC 4 cut(s) 17, 557, 1322, 2065
TspDTI ATGAA 8 cut(s) 633, 651, 725, 940, 1563, 1800, 2025, 2049
TspGWI ACGGA 2 cut(s) 266, 1557
TspRI CASTG 5 cut(s) 475, 883, 1364, 1838, 1908
Van91I CCANNNNNTGG 1 cut(s) 1741
VneI GTGCAC 2 cut(s) 323, 1054
VpaK11BI GGWCC 2 cut(s) 241, 308
VspI ATTAAT 1 cut(s) 9
XagI CCTNNNNNAGG 1 cut(s) 1417
XapI RAATTY 2 cut(s) 1580, 1686
XceI RCATGY 2 cut(s) 415, 1815
XcmI CCANNNNNNNNNTGG 1 cut(s) 1876
XmiI GTMKAC 3 cut(s) 39, 180, 1728
XmnI GAANNNNTTC 1 cut(s) 256
XspI CTAG 4 cut(s) 1238, 1269, 1427, 1799
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.